CF832971

Overview
NameCF832971
Unique NameCF832971
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9466 contig Csv1_Contig9466:120..934. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832971 vs. ExPASy Swiss-Prot
Match: ARD1_RAT (GTP-binding protein ARD-1 (Fragment) OS=Rattus norvegicus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.346e-52
Identity = 98/159 (61.64%), Postives = 122/159 (76.73%), Query Frame = -3
Query:  340 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRQWYIQSTCATSGEGLYEGLDWLSNNI 813
            ++ +GLD AGKTTIL+KLK  E +  IPTIGFNVETVEYKN+ FT+WDVG + K+RPLW+HY+ NTQ ++FVVDS+ RDR+ EA  EL ++L E ELRDA+LL+FANKQD+  A++  EIT+ L LH L   R WYIQ   A SG GLYEGLDWLS  +
Sbjct:  387 VVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGEKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 545          
BLAST of CF832971 vs. ExPASy Swiss-Prot
Match: ARF11_CAEEL (ADP-ribosylation factor 1-like 1 OS=Caenorhabditis elegans GN=arf-1.1 PE=3 SV=3)

HSP 1 Score: 202.216 bits (513), Expect = 2.832e-51
Identity = 99/157 (63.06%), Postives = 122/157 (77.71%), Query Frame = -3
Query:  340 LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRQWYIQSTCATSGEGLYEGLDWLSNNI 810
            LM+GLD AGKTTILYKLKL E V TIPTIGFNVETV ++ I+ TVWDVGGQ KIR LW++YF NT  L+FVVDS+D +R+ EA++EL  +L E EL D+ LLVFANKQD+PNA + AE+T  L L SL+ R+W+I  T A SG+GLYEGL W+   +
Sbjct:   21 LMLGLDGAGKTTILYKLKLNETVNTIPTIGFNVETVTFQKITLTVWDVGGQKKIRALWKYYFPNTTTLVFVVDSSDIERIPEAKEELFSLLAEPELADSHLLVFANKQDMPNARSPAELTQLLDLGSLKNREWFICGTNAHSGQGLYEGLMWVKKQM 177          
BLAST of CF832971 vs. ExPASy Swiss-Prot
Match: ARL1_YEAST (ADP-ribosylation factor-like protein 1 OS=Saccharomyces cerevisiae GN=ARL1 PE=1 SV=4)

HSP 1 Score: 197.978 bits (502), Expect = 5.342e-50
Identity = 93/154 (60.39%), Postives = 119/154 (77.27%), Query Frame = -3
Query:  352 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRQWYIQSTCATSGEGLYEGLDWL 813
            IL++GLD AGKTTILY+L++GE+VTT PTIGFNVET+ YKN+   VWD+GGQ  IRP WR Y+ +T  +IFVVDS D+DR+  A  ELH ML E+EL+DA LLVFANKQD P A++A+E++ +L L  L+ R W I ++ A  GEG+ EGLDWL
Sbjct:   21 ILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWL 174          
BLAST of CF832971 vs. ExPASy Swiss-Prot
Match: ARL1_HUMAN (ADP-ribosylation factor-like protein 1 OS=Homo sapiens GN=ARL1 PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.342e-50
Identity = 93/161 (57.76%), Postives = 123/161 (76.40%), Query Frame = -3
Query:  331 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRQWYIQSTCATSGEGLYEGLDWLSNNIANK 813
            IL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDR+  ++ EL  ML E+ELR A+L+VFANKQD+  AM ++E+ + LGL +L+ R+W I  T AT G GL E ++WL   + ++
Sbjct:   20 ILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180          
BLAST of CF832971 vs. ExPASy Swiss-Prot
Match: ARL1_BOVIN (ADP-ribosylation factor-like protein 1 OS=Bos taurus GN=ARL1 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 9.111e-50
Identity = 93/161 (57.76%), Postives = 122/161 (75.78%), Query Frame = -3
Query:  331 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRQWYIQSTCATSGEGLYEGLDWLSNNIANK 813
            IL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDR+  ++ EL  ML E+ELR A+L+VFANKQD+  AM  +E+ + LGL +L+ R+W I  T AT G GL E ++WL   + ++
Sbjct:   20 ILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180          
BLAST of CF832971 vs. ExPASy Swiss-Prot
Match: ARL1_RAT (ADP-ribosylation factor-like protein 1 OS=Rattus norvegicus GN=Arl1 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.190e-49
Identity = 93/161 (57.76%), Postives = 122/161 (75.78%), Query Frame = -3
Query:  331 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRQWYIQSTCATSGEGLYEGLDWLSNNIANK 813
            IL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDR+  ++ EL  ML E+ELR A+L+VFANKQD+  AM  +E+ + LGL +L+ R+W I  T AT G GL E ++WL   + ++
Sbjct:   20 ILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180          
BLAST of CF832971 vs. ExPASy Swiss-Prot
Match: ARL1_MOUSE (ADP-ribosylation factor-like protein 1 OS=Mus musculus GN=Arl1 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.190e-49
Identity = 93/161 (57.76%), Postives = 122/161 (75.78%), Query Frame = -3
Query:  331 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRQWYIQSTCATSGEGLYEGLDWLSNNIANK 813
            IL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDR+  ++ EL  ML E+ELR A+L+VFANKQD+  AM  +E+ + LGL +L+ R+W I  T AT G GL E ++WL   + ++
Sbjct:   20 ILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180          
BLAST of CF832971 vs. ExPASy Swiss-Prot
Match: ARL1_DROME (ADP-ribosylation factor-like protein 1 OS=Drosophila melanogaster GN=Arf72A PE=1 SV=5)

HSP 1 Score: 195.282 bits (495), Expect = 3.462e-49
Identity = 93/161 (57.76%), Postives = 120/161 (74.53%), Query Frame = -3
Query:  331 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRQWYIQSTCATSGEGLYEGLDWLSNNIANK 813
            IL++GLD AGKTTILY+L++GE+VTTIPTIGFNVE V YKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDR+  ++DEL  ML E+EL  A+L+V ANKQD+   M  AE+   LGL +L+ R + I  T AT GEGL + +DWLSN + ++
Sbjct:   19 ILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSADRDRIGISKDELLYMLREEELAGAILVVLANKQDMDGCMTVAEVHHALGLENLKNRTFQIFKTSATKGEGLDQAMDWLSNTLQSR 179          
BLAST of CF832971 vs. ExPASy Swiss-Prot
Match: ARF3_YEAST (ADP-ribosylation factor 3 OS=Saccharomyces cerevisiae GN=ARF3 PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.718e-48
Identity = 92/158 (58.23%), Postives = 122/158 (77.22%), Query Frame = -3
Query:  343 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH-SLRQRQWYIQSTCATSGEGLYEGLDWLSNN 813
            ILM+GLD AGKTTILYKLKL +I T+ PT+GFNVETV YKN+ F +WDVGGQ ++RPLWRHYF  T  LIFV+DS+ R+R+ EA++EL+ ++ E E+ + VLLV+ANKQDL +AM   E++D L L  +L+ + W +  + A SG+GL EGL W+SNN
Sbjct:   20 ILMLGLDKAGKTTILYKLKLNKIKTSTPTVGFNVETVTYKNVKFNMWDVGGQQRLRPLWRHYFPATTALIFVIDSSARNRMEEAKEELYSIIGEKEMENVVLLVWANKQDLKDAMKPQEVSDFLELEKNLKNQPWCVIGSNALSGQGLVEGLSWISNN 177          
BLAST of CF832971 vs. ExPASy Swiss-Prot
Match: ARL1_CAEEL (ADP-ribosylation factor-like protein 1 OS=Caenorhabditis elegans GN=arl-1 PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.931e-48
Identity = 95/161 (59.01%), Postives = 116/161 (72.05%), Query Frame = -3
Query:  331 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRQWYIQSTCATSGEGLYEGLDWLSNNIANK 813
            IL++GLD AGKTTILY+L++GE+VTTIPTIGFNVE VEYKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDRV  +R EL  ML EDEL+ AVL V ANKQD+   +   E+   LGL +LR R   I  T A+ GEGL   +DWL+N +  K
Sbjct:   19 ILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVEQVEYKNLKFQVWDLGGQTSIRPYWRCYYANTDAIIYVVDSADRDRVGISRQELATMLQEDELQGAVLAVLANKQDIAGCLTETEVYKALGLDALRNRTIQIFKTSASKGEGLDPAMDWLANQLQQK 179          
The following BLAST results are available for this feature:
BLAST of CF832971 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARD1_RAT3.346e-5261.64GTP-binding protein ARD-1 (Fragment) OS=Rattus nor... [more]
ARF11_CAEEL2.832e-5163.06ADP-ribosylation factor 1-like 1 OS=Caenorhabditis... [more]
ARL1_YEAST5.342e-5060.39ADP-ribosylation factor-like protein 1 OS=Saccharo... [more]
ARL1_HUMAN5.342e-5057.76ADP-ribosylation factor-like protein 1 OS=Homo sap... [more]
ARL1_BOVIN9.111e-5057.76ADP-ribosylation factor-like protein 1 OS=Bos taur... [more]
ARL1_RAT1.190e-4957.76ADP-ribosylation factor-like protein 1 OS=Rattus n... [more]
ARL1_MOUSE1.190e-4957.76ADP-ribosylation factor-like protein 1 OS=Mus musc... [more]
ARL1_DROME3.462e-4957.76ADP-ribosylation factor-like protein 1 OS=Drosophi... [more]
ARF3_YEAST1.718e-4858.23ADP-ribosylation factor 3 OS=Saccharomyces cerevis... [more]
ARL1_CAEEL2.931e-4859.01ADP-ribosylation factor-like protein 1 OS=Caenorha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02M03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02M03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832971 ID=CF832971; Name=CF832971; organism=Citrus sinensis; type=EST; length=815bp
TTTTTTTTTTTTTTTAGAACAAATCAATAAGCCAATTATTGGTGACTAAA
AAATATCTGCAACGCTACAGACTAAAGAGAAGCTAAGAGGAATAACAGCC
AAAAAATCATTGAATTCTGAATAATGAGGGTAATTTAAACTCTACAATGA
CAATGCAGAAAACTTTATAGTATGGTGCCAATCAAATATCTAACACAAAC
AAATACATTCTACTGAACGTAGGTAGTAAAGCCCAAAAAGAATCCCCGAC
AAAATAAACAAAAGCATAGTAACATCATTCACATAGATGCTGCCGCAAAG
AGTCGCTCAAACTTGACCAATCACTTAAGCCTTGTTAGCGATGTTGTTGG
AGAGCCAGTCCAGACCCTCATAGAGTCCTTCCCCAGATGTTGCACATGTG
CTCTGGATGTACCATTGGCGTTGGCGAAGTGAGTGAAGACCAAGCTTATC
AGTGATCTCTGCAGCATTCATGGCATTTGGAAGATCTTGCTTGTTGGCAA
AAACAAGCAGCACAGCATCCCTCAACTCATCCTCATTCAGCATCCGGTGC
AGTTCATCTCTAGCTTCAACCACACGGTCACGATCATTGCTATCAACCAC
AAAGATAAGTCCTTGAGTGTTTTGGAAGTAATGTCTCCACAAAGGACGAA
TCTTATCCTGACCCCCAACATCCCAAACAGTGAAGCTAATGTTCTTATAT
TCCACAGTCTCCACGTTGAAACCAATGGTAGGAATGGTTGTCACAATCTC
ACCGAGCTTGAGCTTGTACAAAATGGTGGTCTTACCAGCAGCGTCGAGAC
CCACCATCAGAATTC
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