CF832972

Overview
NameCF832972
Unique NameCF832972
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832972 vs. ExPASy Swiss-Prot
Match: ARFF_DICDI (ADP-ribosylation factor F OS=Dictyostelium discoideum GN=arrF PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.044e-47
Identity = 87/167 (52.10%), Postives = 121/167 (72.46%), Query Frame = 2
Query:    2 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRML--NEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 496
            + +RILM+GLD AGK+T+LYKLK G+++ TIPTIGFNVE +EYKN+S  VWD+GGQ+ IR LWR Y Q T   IFVVDS DR+R  E + E+  ++  N++E  +A LL+FANKQD+ N +  AE+ + L L+SL  + W++Q   A  G+G+YEG DW+ +N + K
Sbjct:   24 RNIRILMIGLDGAGKSTLLYKLKFGDVIRTIPTIGFNVEIIEYKNLSMNVWDIGGQNNIRALWRQYDQRTDVFIFVVDSTDRERFDEVKQEIKNIIEQNKNESSNASLLIFANKQDMLNPITPAELVNSLDLNSLTNKKWHVQPCSAVRGDGIYEGFDWIVSNSSGK 190          
BLAST of CF832972 vs. ExPASy Swiss-Prot
Match: ARFD_DICDI (ADP-ribosylation factor D OS=Dictyostelium discoideum GN=arrD PE=3 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 8.836e-47
Identity = 82/162 (50.62%), Postives = 121/162 (74.69%), Query Frame = 2
Query:    2 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 487
            K +++LM+GLD +GKTTILYKL L E+V+TI T+G+NVET+++K+++ T+WD+ G+++IR LW+ ++     +IFVVDS+DR R+ EA  EL +++ E+EL+   LL+FA KQD  + M   E+TD+LGLH ++ R WY+Q T    G G+YEGLDWLS  I
Sbjct:   16 KAIKLLMLGLDGSGKTTILYKLMLNEVVSTISTLGYNVETIQHKHLNLTLWDLAGEERIRTLWKPFYNKCTAIIFVVDSSDRLRIDEAASELAKLMKEEELKGCSLLIFATKQDCISPMEIPELTDQLGLHDIKDRRWYVQPTRTLEGIGIYEGLDWLSTKI 177          
BLAST of CF832972 vs. ExPASy Swiss-Prot
Match: ARL5B_MOUSE (ADP-ribosylation factor-like protein 5B OS=Mus musculus GN=Arl5b PE=2 SV=3)

HSP 1 Score: 176.792 bits (447), Expect = 9.144e-44
Identity = 81/162 (50.00%), Postives = 117/162 (72.22%), Query Frame = 2
Query:    2 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 487
            +E ++++VGLD AGKTTILY+  + E+V T PTIG NVE +  KN  F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+R+   ++EL+RML  ++LR A +L+FANKQD+   M AAEI+  L L S++   W+IQS CA +GEGL +GL+W+++ I
Sbjct:   15 QEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRI 176          
BLAST of CF832972 vs. ExPASy Swiss-Prot
Match: ARL5B_HUMAN (ADP-ribosylation factor-like protein 5B OS=Homo sapiens GN=ARL5B PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.144e-44
Identity = 81/162 (50.00%), Postives = 117/162 (72.22%), Query Frame = 2
Query:    2 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 487
            +E ++++VGLD AGKTTILY+  + E+V T PTIG NVE +  KN  F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+R+   ++EL+RML  ++LR A +L+FANKQD+   M AAEI+  L L S++   W+IQS CA +GEGL +GL+W+++ I
Sbjct:   15 QEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRI 176          
BLAST of CF832972 vs. ExPASy Swiss-Prot
Match: ARL5A_MOUSE (ADP-ribosylation factor-like protein 5A OS=Mus musculus GN=Arl5a PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.475e-43
Identity = 79/162 (48.77%), Postives = 115/162 (70.99%), Query Frame = 2
Query:    2 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 487
            +E ++++VGLD AGKTTILY+  + E+V T PTIG NVE +   N  F +WD+GGQ+ +RP W  Y+ NT+ +I VVDS DR+R+   R+EL++ML  ++LR A LL+FANKQD+   M  AEI+  L L S++   W+IQ+ CA +GEGL +GL+W+ + +
Sbjct:   15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVVNNTRFLMWDIGGQESLRPSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176          
BLAST of CF832972 vs. ExPASy Swiss-Prot
Match: ARL2_BOVIN (ADP-ribosylation factor-like protein 2 OS=Bos taurus GN=ARL2 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.741e-43
Identity = 81/165 (49.09%), Postives = 116/165 (70.30%), Query Frame = 2
Query:    2 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 496
            +E+R+LM+GLD AGKTTIL K    +I T  PT+GFN++T+E++     +WDVGGQ  +R  WR+YF++T GLI+VVDS DR R+ + + EL  +L E+ L  A LL+FANKQDLP A+++  I + L L S+R  HW IQ   A +GE L  G+DWL ++I+++
Sbjct:   15 RELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQNLLVEERLAGATLLIFANKQDLPGALSSNAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 179          
BLAST of CF832972 vs. ExPASy Swiss-Prot
Match: ARL5_DICDI (ADP-ribosylation factor-like protein 5 OS=Dictyostelium discoideum GN=arl5 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.320e-42
Identity = 78/161 (48.45%), Postives = 117/161 (72.67%), Query Frame = 2
Query:    5 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 487
            E ++++VGL+AAGKTT LYKL L E+V+T PT+G N+E   Y+NI   +WD+GGQD +R  W  Y+ NTQ +I V+DS DR RV   ++EL +ML  + L+ +++L++ANKQDL +AM+  E++  L LHS++   ++IQ+ CA +G+GL  GLDWL ++I
Sbjct:   20 EYKVIIVGLNAAGKTTTLYKLLLDEVVSTTPTVGSNLEEFVYRNIRLLMWDLGGQDLLRSTWNQYYINTQAVILVIDSTDRARVNLIKEELFKMLAHENLKKSIILIYANKQDLKDAMSPTELSTLLSLHSIKDHDYHIQACCALTGQGLESGLDWLVSHI 180          
BLAST of CF832972 vs. ExPASy Swiss-Prot
Match: ARL2_HUMAN (ADP-ribosylation factor-like protein 2 OS=Homo sapiens GN=ARL2 PE=1 SV=4)

HSP 1 Score: 172.94 bits (437), Expect = 1.320e-42
Identity = 81/165 (49.09%), Postives = 116/165 (70.30%), Query Frame = 2
Query:    2 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 496
            +E+R+LM+GLD AGKTTIL K    +I T  PT+GFN++T+E++     +WDVGGQ  +R  WR+YF++T GLI+VVDS DR R+ + + EL  +L E+ L  A LL+FANKQDLP A+++  I + L L S+R  HW IQ   A +GE L  G+DWL ++I+++
Sbjct:   15 RELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 179          
BLAST of CF832972 vs. ExPASy Swiss-Prot
Match: ARL2_MOUSE (ADP-ribosylation factor-like protein 2 OS=Mus musculus GN=Arl2 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.252e-42
Identity = 80/165 (48.48%), Postives = 115/165 (69.70%), Query Frame = 2
Query:    2 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 496
            +E+R+LM+GLD AGKTTIL K    ++ T  PT+GFN++T+E++     +WDVGGQ  +R  WR+YF++T GLI+VVDS DR R+ + + EL  +L E+ L  A LL+FANKQDLP A++   I + L L S+R  HW IQ   A +GE L  G+DWL ++I+++
Sbjct:   15 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 179          
BLAST of CF832972 vs. ExPASy Swiss-Prot
Match: ARL5A_RAT (ADP-ribosylation factor-like protein 5A OS=Rattus norvegicus GN=Arl5a PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.941e-42
Identity = 78/162 (48.15%), Postives = 114/162 (70.37%), Query Frame = 2
Query:    2 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 487
            +E ++++VGLD AGKTTILY+  + E+V T PTIG NVE +   N  F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+R+   R+EL++ML  ++LR A LL+FANKQD+   M  AEI+  L L S++   W+IQ+ CA +GEGL +GL+W+ + +
Sbjct:   15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVVNNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176          
The following BLAST results are available for this feature:
BLAST of CF832972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARFF_DICDI1.044e-4752.10ADP-ribosylation factor F OS=Dictyostelium discoid... [more]
ARFD_DICDI8.836e-4750.62ADP-ribosylation factor D OS=Dictyostelium discoid... [more]
ARL5B_MOUSE9.144e-4450.00ADP-ribosylation factor-like protein 5B OS=Mus mus... [more]
ARL5B_HUMAN9.144e-4450.00ADP-ribosylation factor-like protein 5B OS=Homo sa... [more]
ARL5A_MOUSE3.475e-4348.77ADP-ribosylation factor-like protein 5A OS=Mus mus... [more]
ARL2_BOVIN7.741e-4349.09ADP-ribosylation factor-like protein 2 OS=Bos taur... [more]
ARL5_DICDI1.320e-4248.45ADP-ribosylation factor-like protein 5 OS=Dictyost... [more]
ARL2_HUMAN1.320e-4249.09ADP-ribosylation factor-like protein 2 OS=Homo sap... [more]
ARL2_MOUSE2.252e-4248.48ADP-ribosylation factor-like protein 2 OS=Mus musc... [more]
ARL5A_RAT2.941e-4248.15ADP-ribosylation factor-like protein 5A OS=Rattus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02M03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02M03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832972 ID=CF832972; Name=CF832972; organism=Citrus sinensis; type=EST; length=674bp
GAAAGAGATGCGTATTCTGATGGTGGGTCTCGACGCTGCTGGTAAGACCA
CCATTTTGTACAAGCTCAAGCTCGGTGAGATTGTGACAACCATTCCTACC
ATTGGTTTCAACGTGGAGACTGTGGAATATAAGAACATTAGCTTCACTGT
TTGGGATGTTGGGGGTCAGGATAAGATTCGTCCTTTGTGGAGACATTACT
TCCAAAACACTCAAGGACTTATCTTTGTGGTTGATAGCAATGATCGTGAC
CGTGTGGTTGAAGCTAGAGATGAACTGCACCGGATGCTGAATGAGGATGA
GTTGAGGGATGCTGTGCTGCTTGTTTTTGCCAACAAGCAAGATCTTCCAA
ATGCCATGAATGCTGCAGAGATCACTGATAAGCTTGGTCTTCACTCACTT
CGCCAACGCCACTGGTACATCCAGAGCACATGTGCAACATCTGGGGAAGG
ACTCTATGAGGGTCTGGACTGGCTCTCCAACAACATCGCTAACAAGGCTT
AAGTGATTGGTCAAGTCTGAGCGACTCTTTGCGGCAGCATCTATGTGAAT
GATGTTACTATGCTTTTGTTTATTTTGTCGGGGATTCTTTTTGGGCTTTA
CTACCTACGTTCAGTAGAATGTATTTGTTTGTGTTAGATATTTGATTGGC
ACCATACTATACAGTTTTCTGCAT
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