CF832977

Overview
NameCF832977
Unique NameCF832977
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: ARNA_YERPP (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis (strain Pestoides F) GN=arnA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.126e-35
Identity = 82/208 (39.42%), Postives = 119/208 (57.21%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTV----DVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D    +D    G  R +     NL+   P+KLVDGG  +R F  I D IEA+  +IEN     +G I N+GNP NE ++R+LAEM+   +   + E     P      D+ S  +YG+GY D + R P +    + L W P+ ++   +  TL +
Sbjct:  446 EDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFRPFNWMGPRLD---NLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCFTDIHDGIEALFRIIENRDGCCDGRIINIGNPTNEASIRELAEMLLTSFE--NHELRDHFPPFAGFKDIESSAYYGKGYQDVEYRTPSIKNARRILHWQPEIAMQQTVTETLDF 648          
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: ARNA_YERPN (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=arnA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.126e-35
Identity = 82/208 (39.42%), Postives = 119/208 (57.21%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTV----DVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D    +D    G  R +     NL+   P+KLVDGG  +R F  I D IEA+  +IEN     +G I N+GNP NE ++R+LAEM+   +   + E     P      D+ S  +YG+GY D + R P +    + L W P+ ++   +  TL +
Sbjct:  446 EDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFRPFNWMGPRLD---NLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCFTDIHDGIEALFRIIENRDGCCDGRIINIGNPTNEASIRELAEMLLTSFE--NHELRDHFPPFAGFKDIESSAYYGKGYQDVEYRTPSIKNARRILHWQPEIAMQQTVTETLDF 648          
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: ARNA_YERPG (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis bv. Antiqua (strain Angola) GN=arnA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.126e-35
Identity = 82/208 (39.42%), Postives = 119/208 (57.21%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTV----DVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D    +D    G  R +     NL+   P+KLVDGG  +R F  I D IEA+  +IEN     +G I N+GNP NE ++R+LAEM+   +   + E     P      D+ S  +YG+GY D + R P +    + L W P+ ++   +  TL +
Sbjct:  446 EDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFRPFNWMGPRLD---NLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCFTDIHDGIEALFRIIENRDGCCDGRIINIGNPTNEASIRELAEMLLTSFE--NHELRDHFPPFAGFKDIESSAYYGKGYQDVEYRTPSIKNARRILHWQPEIAMQQTVTETLDF 648          
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: ARNA_YERPE (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis GN=arnA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.126e-35
Identity = 82/208 (39.42%), Postives = 119/208 (57.21%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTV----DVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D    +D    G  R +     NL+   P+KLVDGG  +R F  I D IEA+  +IEN     +G I N+GNP NE ++R+LAEM+   +   + E     P      D+ S  +YG+GY D + R P +    + L W P+ ++   +  TL +
Sbjct:  446 EDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFRPFNWMGPRLD---NLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCFTDIHDGIEALFRIIENRDGCCDGRIINIGNPTNEASIRELAEMLLTSFE--NHELRDHFPPFAGFKDIESSAYYGKGYQDVEYRTPSIKNARRILHWQPEIAMQQTVTETLDF 648          
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: ARNA_YERPB (Bifunctional polymyxin resistance protein arnA OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=arnA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.126e-35
Identity = 82/208 (39.42%), Postives = 119/208 (57.21%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTV----DVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D    +D    G  R +     NL+   P+KLVDGG  +R F  I D IEA+  +IEN     +G I N+GNP NE ++R+LAEM+   +   + E     P      D+ S  +YG+GY D + R P +    + L W P+ ++   +  TL +
Sbjct:  446 EDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFRPFNWMGPRLD---NLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCFTDIHDGIEALFRIIENRDGCCDGQIINIGNPTNEASIRELAEMLLTSFE--NHELRDHFPPFAGFKDIESSAYYGKGYQDVEYRTPSIKNARRILHWQPEIAMQQTVTETLDF 648          
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: ARNA_YERPA (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=arnA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.126e-35
Identity = 82/208 (39.42%), Postives = 119/208 (57.21%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTV----DVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D    +D    G  R +     NL+   P+KLVDGG  +R F  I D IEA+  +IEN     +G I N+GNP NE ++R+LAEM+   +   + E     P      D+ S  +YG+GY D + R P +    + L W P+ ++   +  TL +
Sbjct:  446 EDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFRPFNWMGPRLD---NLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCFTDIHDGIEALFRIIENRDGCCDGRIINIGNPTNEASIRELAEMLLTSFE--NHELRDHFPPFAGFKDIESSAYYGKGYQDVEYRTPSIKNARRILHWQPEIAMQQTVTETLDF 648          
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: ARNA_YERP3 (Bifunctional polymyxin resistance protein arnA OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=arnA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.126e-35
Identity = 82/208 (39.42%), Postives = 119/208 (57.21%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTV----DVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D    +D    G  R +     NL+   P+KLVDGG  +R F  I D IEA+  +IEN     +G I N+GNP NE ++R+LAEM+   +   + E     P      D+ S  +YG+GY D + R P +    + L W P+ ++   +  TL +
Sbjct:  446 EDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFRPFNWMGPRLD---NLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCFTDIHDGIEALFRIIENRDGCCDGQIINIGNPTNEASIRELAEMLLTSFE--NHELRDHFPPFAGFKDIESSAYYGKGYQDVEYRTPSIKNARRILHWQPEIAMQQTVTETLDF 648          
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: ARNA_ENT38 (Bifunctional polymyxin resistance protein arnA OS=Enterobacter sp. (strain 638) GN=arnA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.126e-35
Identity = 79/213 (37.09%), Postives = 122/213 (57.28%), Query Frame = 2
Query:   38 VLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENP-ARANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 667
            V  ED S  I G I KQRW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I D IEA+  +IEN  +  +G I N+GNP NE ++++LAEM+   + K  +           +V S  +YG+GY D + R P +   ++ + W P   +   ++ TL +  +T
Sbjct:  443 VFDEDHSNLIVGPINKQRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGRQKRCFTDISDGIEALFRIIENKNSNCDGQIINIGNPDNEASIKELAEMLLASFEKHPLRNHFPPFAGFREVESSTYYGKGYQDVEHRKPSIRNAHRLISWTPTVEMEKTIDETLDFFLKT 652          
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: ARNA_ECO27 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.126e-35
Identity = 81/217 (37.33%), Postives = 122/217 (56.22%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 667
            ED S  I G + K RW Y+ +KQLI+R+I+A G + GL+FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +    + L W PK  + + ++ TL +  RT
Sbjct:  446 EDHSNLIVGPVNKPRWIYSVSKQLIDRVIWAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHYFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNARRCLDWEPKIDMQETIDETLDFFLRT 652          
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: ARNA_SHIDS (Bifunctional polymyxin resistance protein arnA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=arnA PE=3 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.471e-35
Identity = 80/217 (36.87%), Postives = 123/217 (56.68%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 667
            ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +   ++ L W PK  + + ++ TL +  RT
Sbjct:  446 EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRT 652          
The following BLAST results are available for this feature:
BLAST of CF832977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
ARNA_YERPP1.126e-3539.42Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPN1.126e-3539.42Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPG1.126e-3539.42Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPE1.126e-3539.42Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPB1.126e-3539.42Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPA1.126e-3539.42Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERP31.126e-3539.42Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ENT381.126e-3537.09Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECO271.126e-3537.33Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SHIDS1.471e-3536.87Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02M07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832977 ID=CF832977; Name=CF832977; organism=Citrus sinensis; type=EST; length=755bp
TAAAGATAGTCCTCTTCGGCAGGATCCTGCTTACTATGTTCTTAAAGAAG
ATGCCTCCCCCTGCATTTTTGGCTCTATTGAGAAGCAGAGGTGGTCGTAT
GCATGTGCAAAGCAATTGATTGAAAGGCTGATTTATGCTGAGGGTGCAGA
GAATGGTCTTGAGTTCACCATTGTGAGGCCCTTTAACTGGATTGGTCCGA
GGATGGACTTCATTCCCGGCATTGATGGTCCAAGTGAGGGTGTTCCAAGG
GTTCTGGCATGCTTTAGTAACAATCTCCTTCGCCGGCAGCCACTCAAGCT
TGTCGACGGTGGCCAATCTCAGAGGACTTTTATTTACATAAAGGATGCTA
TTGAAGCTGTTCTATTAATGATTGAAAATCCAGCAAGGGCCAATGGTCAT
ATTTTCAATGTGGGCAACCCCCACAATGAAGTTACAGTTCGACAGCTTGC
TGAGATGATGACTGAGGTGTATGCAAAGGTGAGTGGAGAGGCTGCTTTGG
AGGAGCCAACAGTTGATGTCAGCTCCAAAGAATTTTATGGTGAAGGATAT
GATGATAGTGACAAGAGAATTCCAGACATGACCATTATAAATCAACAGCT
TGGTTGGAACCCGAAGACCTCACTTTGGGACTTGCTTGAATCAACCCTTA
CCTATCAGCACAGGACATATGCGGAGGCCATAAAGCATGCCGTGGCAACA
CCAGTTGCATCCAGCTGAGGAGATATAGTGTTCAGATGCTTGTGGCAAAC
ATTTA
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