CF832977

Overview
NameCF832977
Unique NameCF832977
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: ARNA_ECO57 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O157:H7 GN=arnA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.921e-35
Identity = 80/217 (36.87%), Postives = 122/217 (56.22%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 667
            ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +   +  L W PK  + + ++ TL +  RT
Sbjct:  446 EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNAHHCLDWEPKIDMQETIDETLDFFLRT 652          
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: ARNA_SHESH (Bifunctional polymyxin resistance protein arnA OS=Shewanella sediminis (strain HAW-EB3) GN=arnA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.509e-35
Identity = 82/224 (36.61%), Postives = 123/224 (54.91%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD----------VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYAEAIK 685
            ED SP I G I +QRW Y+ +KQL++R+I+A G ++ L+FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I +AIEA+  +IEN     +G I N+G+P NE +++ +AE + E +         E P  D          V S+ FYG+GY D   R P +    + L W P   +   +E TL +  +T  E  K
Sbjct:  448 EDTSPLITGPINRQRWIYSTSKQLLDRVIWAYGKKDNLKFTLFRPFNWMGPRLD---SLNSARVGSSRAITQLILNLVEGTPIKLIDGGEQKRCFTDISEAIEALFRVIENKDGLCDGQIINIGSPDNEASIKVMAETLVEKFE--------EHPLRDQFPPFAGYNLVESQSFYGDGYQDVQHRRPSIKNAKKLLNWEPTIMMDQTIEDTLDFFLKTAVEETK 660          
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: ARNA_ECOLU (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.509e-35
Identity = 80/217 (36.87%), Postives = 122/217 (56.22%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 667
            ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +    + L W PK  + + ++ TL +  RT
Sbjct:  446 EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPDNEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNARRCLDWEPKIDMQETIDETLDFFLRT 652          
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: ARNA_AERHH (Bifunctional polymyxin resistance protein arnA OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=arnA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.509e-35
Identity = 83/209 (39.71%), Postives = 120/209 (57.42%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEE--PTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            ED+S  I G I KQRW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D    +D    G  R +     NL+   P++LVDGG  +R F  I+D IEA+  +IEN   R +G I N+GNP NE +++Q+AE++    AK       +   P      V SK FYG+GY D   R P +    + L W P   + + + +TL +
Sbjct:  448 EDSSRLIVGPINKQRWIYSVSKQLLDRVIWAYGKKEGLNFTLFRPFNWMGPRLD---SLDSARIGSSRAITQLILNLVDGTPIQLVDGGAQKRCFTDIEDGIEALFRIIENKENRCDGQIINIGNPDNEASIQQMAEIL---LAKFEAHPLRDHFPPFAGFKLVESKSFYGDGYQDVSHRRPSIANARRLLDWEPTIEMEETIGNTLDF 650          
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: ARNA_SHIB3 (Putative bifunctional polymyxin resistance protein arnA OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=arnA PE=5 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.281e-35
Identity = 79/217 (36.41%), Postives = 123/217 (56.68%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 667
            ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGG+ +R F  I+D IEA+  +IEN   R +G I N+GNP NE ++ +L +M+   + K          +G   +E       S  +YG+GY D + R P +   ++ L W PK  + + ++ TL +  RT
Sbjct:  312 EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGKMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRT 518          
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: ARNA_SODGM (Bifunctional polymyxin resistance protein arnA OS=Sodalis glossinidius (strain morsitans) GN=arnA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.591e-35
Identity = 80/209 (38.28%), Postives = 117/209 (55.98%), Query Frame = 2
Query:   38 VLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            V  ED S  I G I KQRW Y+ +KQL++R+++A G + GL FT+ RPFNW+GPR+D    ++    G  R +     NL+    +KLVDGG  +R F  I D IEA+  +IEN     +G I N+GNP NE ++RQLAE++   + +  +           DV S  +YG+GY D + R P +    + LGW P   +   ++ TL +
Sbjct:  443 VFDEDDSSLIVGPINKQRWIYSVSKQLLDRVLWAYGEKEGLRFTLFRPFNWMGPRLD---NLNAARIGSSRAITQLILNLVEGSHIKLVDGGAQKRCFTDISDGIEALFRIIENKDNNCDGQIINIGNPDNEASIRQLAELLLASFERHPLRQHFPPFAGFRDVESSSYYGKGYQDVEHRKPSIRNAKRLLGWAPSVPMAQTIDETLDF 648          
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: ARNA_SALTY (Bifunctional polymyxin resistance protein arnA OS=Salmonella typhimurium GN=arnA PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.301e-35
Identity = 79/207 (38.16%), Postives = 119/207 (57.49%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            ED S  I G + K RW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGGQ +R F  I+D IEA+  +I N   R +G I N+GNP NE ++++LA ++ + + K         P      V S+ +YG+GY D   R P +    + LGW P  ++ D +E TL +
Sbjct:  446 EDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD---SLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNDGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHF-PPFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDF 648          
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: ARNA_SALPC (Bifunctional polymyxin resistance protein arnA OS=Salmonella paratyphi C (strain RKS4594) GN=arnA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.301e-35
Identity = 79/207 (38.16%), Postives = 119/207 (57.49%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            ED S  I G + K RW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGGQ +R F  I+D IEA+  +I N   R +G I N+GNP NE ++++LA ++ + + K         P      V S+ +YG+GY D   R P +    + LGW P  ++ D +E TL +
Sbjct:  446 EDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD---SLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHF-PPFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDF 648          
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: ARNA_SALPB (Bifunctional polymyxin resistance protein arnA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=arnA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.301e-35
Identity = 79/207 (38.16%), Postives = 119/207 (57.49%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            ED S  I G + K RW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGGQ +R F  I+D IEA+  +I N   R +G I N+GNP NE ++++LA ++ + + K         P      V S+ +YG+GY D   R P +    + LGW P  ++ D +E TL +
Sbjct:  446 EDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD---SLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNDGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHF-PPFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDF 648          
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: ARNA_SALNS (Bifunctional polymyxin resistance protein arnA OS=Salmonella newport (strain SL254) GN=arnA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.301e-35
Identity = 79/207 (38.16%), Postives = 119/207 (57.49%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVD---VSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            ED S  I G + K RW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D    ++    G  R +     NL+   P+KL+DGGQ +R F  I+D IEA+  +I N   R +G I N+GNP NE ++++LA ++ + + K         P      V S+ +YG+GY D   R P +    + LGW P  ++ D +E TL +
Sbjct:  446 EDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD---SLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNEGDRCDGKIINIGNPDNEASIQELATLLLDSFDKHPLRCHF-PPFAGFQVVESRSYYGKGYQDVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDF 648          
The following BLAST results are available for this feature:
BLAST of CF832977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
ARNA_ECO571.921e-3536.87Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SHESH2.509e-3536.61Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOLU2.509e-3536.87Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_AERHH2.509e-3539.71Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SHIB34.281e-3536.41Putative bifunctional polymyxin resistance protein... [more]
ARNA_SODGM5.591e-3538.28Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALTY7.301e-3538.16Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALPC7.301e-3538.16Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALPB7.301e-3538.16Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALNS7.301e-3538.16Bifunctional polymyxin resistance protein arnA OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02M07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832977 ID=CF832977; Name=CF832977; organism=Citrus sinensis; type=EST; length=755bp
TAAAGATAGTCCTCTTCGGCAGGATCCTGCTTACTATGTTCTTAAAGAAG
ATGCCTCCCCCTGCATTTTTGGCTCTATTGAGAAGCAGAGGTGGTCGTAT
GCATGTGCAAAGCAATTGATTGAAAGGCTGATTTATGCTGAGGGTGCAGA
GAATGGTCTTGAGTTCACCATTGTGAGGCCCTTTAACTGGATTGGTCCGA
GGATGGACTTCATTCCCGGCATTGATGGTCCAAGTGAGGGTGTTCCAAGG
GTTCTGGCATGCTTTAGTAACAATCTCCTTCGCCGGCAGCCACTCAAGCT
TGTCGACGGTGGCCAATCTCAGAGGACTTTTATTTACATAAAGGATGCTA
TTGAAGCTGTTCTATTAATGATTGAAAATCCAGCAAGGGCCAATGGTCAT
ATTTTCAATGTGGGCAACCCCCACAATGAAGTTACAGTTCGACAGCTTGC
TGAGATGATGACTGAGGTGTATGCAAAGGTGAGTGGAGAGGCTGCTTTGG
AGGAGCCAACAGTTGATGTCAGCTCCAAAGAATTTTATGGTGAAGGATAT
GATGATAGTGACAAGAGAATTCCAGACATGACCATTATAAATCAACAGCT
TGGTTGGAACCCGAAGACCTCACTTTGGGACTTGCTTGAATCAACCCTTA
CCTATCAGCACAGGACATATGCGGAGGCCATAAAGCATGCCGTGGCAACA
CCAGTTGCATCCAGCTGAGGAGATATAGTGTTCAGATGCTTGTGGCAAAC
ATTTA
back to top