CF832977

Overview
NameCF832977
Unique NameCF832977
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: ARNA_PSEAE (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa GN=arnA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.006e-33
Identity = 83/219 (37.90%), Postives = 120/219 (54.79%), Query Frame = 2
Query:   20 QDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVY------AKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            QDP +    ED S  + G I KQRW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D    +D    G  R +     +L+   P++LVDGG  +R F  + D IEA+  +I+N   R +G I N+GNP NE ++RQL E +   +      A+    A   E    V S+ FYG+GY D   R P +    + L W P   L + +  TL +
Sbjct:  442 QDPDF---DEDRSNLVVGPINKQRWIYSVSKQLLDRVIWAYG-QQGLRFTLFRPFNWMGPRLD---RLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVDDGIEALARIIDNRDGRCDGQIVNIGNPDNEASIRQLGEELLRQFEAHPLRAQFPPFAGFRE----VESRSFYGDGYQDVAHRKPSIDNARRLLDWQPTIELRETIGKTLDF 649          
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: ARNA_PSEAB (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=arnA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.006e-33
Identity = 83/219 (37.90%), Postives = 120/219 (54.79%), Query Frame = 2
Query:   20 QDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVY------AKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            QDP +    ED S  + G I KQRW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D    +D    G  R +     +L+   P++LVDGG  +R F  + D IEA+  +I+N   R +G I N+GNP NE ++RQL E +   +      A+    A   E    V S+ FYG+GY D   R P +    + L W P   L + +  TL +
Sbjct:  442 QDPDF---DEDRSNLVVGPINKQRWIYSVSKQLLDRVIWAYG-QQGLRFTLFRPFNWMGPRLD---RLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVDDGIEALARIIDNRDGRCDGQIVNIGNPDNEASIRQLGEELLRQFEAHPLRAQFPPFAGFRE----VESRSFYGDGYQDVAHRKPSIDNARRLLDWQPTIELRETIGKTLDF 649          
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: ARNA_PSEA8 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain LESB58) GN=arnA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.006e-33
Identity = 83/219 (37.90%), Postives = 120/219 (54.79%), Query Frame = 2
Query:   20 QDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVY------AKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            QDP +    ED S  + G I KQRW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D    +D    G  R +     +L+   P++LVDGG  +R F  + D IEA+  +I+N   R +G I N+GNP NE ++RQL E +   +      A+    A   E    V S+ FYG+GY D   R P +    + L W P   L + +  TL +
Sbjct:  442 QDPDF---DEDRSNLVVGPINKQRWIYSVSKQLLDRVIWAYG-QQGLRFTLFRPFNWMGPRLD---RLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVDDGIEALARIIDNRDGRCDGQIVNIGNPDNEASIRQLGEELLRQFEAHPLRAQFPPFAGFRE----VESRSFYGDGYQDVAHRKPSIDNARRLLDWQPTIELRETIGKTLDF 649          
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: ARNA_PSEA7 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain PA7) GN=arnA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.166e-32
Identity = 82/219 (37.44%), Postives = 120/219 (54.79%), Query Frame = 2
Query:   20 QDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVY------AKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            QDP +    ED S  + G I KQRW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D    ++    G  R +     +L+   P++LVDGG  +R F  + D IEA+  +I+N   R +G I N+GNP NE ++RQL E +   +      A+    A   E    V S+ FYG+GY D   R P +    + L W P   L + +  TL +
Sbjct:  442 QDPDF---DEDRSNLVVGPINKQRWIYSVSKQLLDRVIWAYG-QQGLRFTLFRPFNWMGPRLD---RLESARIGSSRAITQLILHLVEGTPIRLVDGGAQKRCFTDVDDGIEALARIIDNRDGRCDGQIVNIGNPDNEASIRQLGEELLRQFEAHPLRAQFPPFAGFRE----VESRSFYGDGYQDVAHRKPSIENARRLLDWQPAIELRETIGKTLDF 649          
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: ARNA_WIGBR (Bifunctional polymyxin resistance protein arnA OS=Wigglesworthia glossinidia brevipalpis GN=arnA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.868e-32
Identity = 78/213 (36.62%), Postives = 116/213 (54.46%), Query Frame = 2
Query:   47 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENP-ARANGHIFNVGNPHNEVTVRQLAEMMTEV---------YAKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            E+ S  + G+I+ QRW Y+ +KQL++R+I+A G +N L FTI RPFNWIGP +D     +  +    RV      NL+   P+ +V+ G  +R F  I D IEA+  +I+N   + N  I N+GNPHNE T+ QL +++  +         + K SG   L       S   +YGEGY D D+R P++ I  + L W PKT +   L   + +
Sbjct:  445 EENSNLVTGAIKNQRWIYSSSKQLLDRIIWAYGVKNNLNFTIFRPFNWIGPGLDDFKIAEKQN---ARVTTQIIFNLINGLPVTIVNNGNQKRCFTDIDDGIEALFEIIKNKNNKCNKKIINIGNPHNEYTIMQLTKIIINIIYSNNRNYNFPKFSGFNML-------SGTNYYGEGYQDIDRRKPNIDIAKKLLNWTPKTKIRITLRKIINF 647          
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: UXS1_RAT (UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.300e-11
Identity = 52/189 (27.51%), Postives = 82/189 (43.39%), Query Frame = 2
Query:   89 RWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            R  Y   K++ E + YA   + G+E  + R FN  GPRM    G         RV++ F    L+ +PL +   G   R F Y+ D +  ++ ++ +   +     N+GNP  E T+ + A+++  +    SG           S  +F  E  DD  KR PD+      LGW P   L + L   + Y
Sbjct:  228 RACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDG---------RVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSP---VNLGNPE-EHTILEFAQLIKNLVG--SG-----------SEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHY 390          
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: UXS1_PONAB (UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.300e-11
Identity = 52/189 (27.51%), Postives = 82/189 (43.39%), Query Frame = 2
Query:   89 RWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            R  Y   K++ E + YA   + G+E  + R FN  GPRM    G         RV++ F    L+ +PL +   G   R F Y+ D +  ++ ++ +   +     N+GNP  E T+ + A+++  +    SG           S  +F  E  DD  KR PD+      LGW P   L + L   + Y
Sbjct:  228 RACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDG---------RVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSP---VNLGNPE-EHTILEFAQLIKNLVG--SG-----------SEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHY 390          
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: UXS1_MOUSE (UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.300e-11
Identity = 52/189 (27.51%), Postives = 82/189 (43.39%), Query Frame = 2
Query:   89 RWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            R  Y   K++ E + YA   + G+E  + R FN  GPRM    G         RV++ F    L+ +PL +   G   R F Y+ D +  ++ ++ +   +     N+GNP  E T+ + A+++  +    SG           S  +F  E  DD  KR PD+      LGW P   L + L   + Y
Sbjct:  228 RACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDG---------RVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSP---VNLGNPE-EHTILEFAQLIKNLVG--SG-----------SEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHY 390          
BLAST of CF832977 vs. ExPASy Swiss-Prot
Match: UXS1_HUMAN (UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.300e-11
Identity = 52/189 (27.51%), Postives = 82/189 (43.39%), Query Frame = 2
Query:   89 RWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRQPLKLVDGGQSQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEVTVRQLAEMMTEVYAKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 655
            R  Y   K++ E + YA   + G+E  + R FN  GPRM    G         RV++ F    L+ +PL +   G   R F Y+ D +  ++ ++ +   +     N+GNP  E T+ + A+++  +    SG           S  +F  E  DD  KR PD+      LGW P   L + L   + Y
Sbjct:  228 RACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDG---------RVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSP---VNLGNPE-EHTILEFAQLIKNLVG--SG-----------SEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHY 390          
The following BLAST results are available for this feature:
BLAST of CF832977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
ARNA_PSEAE4.006e-3337.90Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEAB4.006e-3337.90Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEA84.006e-3337.90Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEA71.166e-3237.44Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_WIGBR9.868e-3236.62Bifunctional polymyxin resistance protein arnA OS=... [more]
UXS1_RAT3.300e-1127.51UDP-glucuronic acid decarboxylase 1 OS=Rattus norv... [more]
UXS1_PONAB3.300e-1127.51UDP-glucuronic acid decarboxylase 1 OS=Pongo abeli... [more]
UXS1_MOUSE3.300e-1127.51UDP-glucuronic acid decarboxylase 1 OS=Mus musculu... [more]
UXS1_HUMAN3.300e-1127.51UDP-glucuronic acid decarboxylase 1 OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02M07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832977 ID=CF832977; Name=CF832977; organism=Citrus sinensis; type=EST; length=755bp
TAAAGATAGTCCTCTTCGGCAGGATCCTGCTTACTATGTTCTTAAAGAAG
ATGCCTCCCCCTGCATTTTTGGCTCTATTGAGAAGCAGAGGTGGTCGTAT
GCATGTGCAAAGCAATTGATTGAAAGGCTGATTTATGCTGAGGGTGCAGA
GAATGGTCTTGAGTTCACCATTGTGAGGCCCTTTAACTGGATTGGTCCGA
GGATGGACTTCATTCCCGGCATTGATGGTCCAAGTGAGGGTGTTCCAAGG
GTTCTGGCATGCTTTAGTAACAATCTCCTTCGCCGGCAGCCACTCAAGCT
TGTCGACGGTGGCCAATCTCAGAGGACTTTTATTTACATAAAGGATGCTA
TTGAAGCTGTTCTATTAATGATTGAAAATCCAGCAAGGGCCAATGGTCAT
ATTTTCAATGTGGGCAACCCCCACAATGAAGTTACAGTTCGACAGCTTGC
TGAGATGATGACTGAGGTGTATGCAAAGGTGAGTGGAGAGGCTGCTTTGG
AGGAGCCAACAGTTGATGTCAGCTCCAAAGAATTTTATGGTGAAGGATAT
GATGATAGTGACAAGAGAATTCCAGACATGACCATTATAAATCAACAGCT
TGGTTGGAACCCGAAGACCTCACTTTGGGACTTGCTTGAATCAACCCTTA
CCTATCAGCACAGGACATATGCGGAGGCCATAAAGCATGCCGTGGCAACA
CCAGTTGCATCCAGCTGAGGAGATATAGTGTTCAGATGCTTGTGGCAAAC
ATTTA
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