CF832979

Overview
NameCF832979
Unique NameCF832979
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8246 contig Csv1_Contig8246:273..1030. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832979 vs. ExPASy Swiss-Prot
Match: CAT1_PENJA (Catalase OS=Penicillium janthinellum PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 2 
Query:   20 IIPLQPVGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCQIFAYGDTQRHRLGPNYLMLPVN-APKCPHRNNHYDG 268
            ++PL   G+LV NKNI   F E     F PG +V G+ ++ D +LQ ++F+Y DTQ +R GPN   L  N  P+ P  NN+ DG
Sbjct:  302 LVPLITQGKLVFNKNIQMLFNEVIGAMFQPGHIVRGVDFTEDPLLQGRLFSYLDTQLNRHGPNIQQLGFNRPPRAPIHNNNRDG 385
The following BLAST results are available for this feature:
BLAST of CF832979 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
CAT1_PENJA9.673e-1142.86Catalase OS=Penicillium janthinellum PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02M08_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832979 ID=CF832979; Name=CF832979; organism=Citrus sinensis; type=EST; length=758bp
CAAGTGGTGGCCTGATGACATCATCCCTCTGCAGCCAGTTGGACGCTTGG
TCTTGAACAAGAACATCGATAATTTCTTTGCGGAAAATGAAATGCTTGCA
TTTAACCCTGGTATCGTGGTTCCTGGGATCTACTACTCAAATGATAAGAT
GCTCCAATGTCAAATCTTTGCCTATGGGGATACCCAAAGGCATCGCCTTG
GACCCAACTACTTGATGCTTCCAGTTAATGCACCCAAATGTCCTCATCGC
AACAATCATTATGATGGTTTCATGAATTTCATGCACAGGGATGAGGAGGT
CGATTACTTTCCTTCGAGGTATGATCCTACTCGTCATGCTGAGAGATATC
CCATTCCTTCTGATGTAATTACAGGAAGGCGTGAGAAGGCTTGCATTGAG
AAGGAAAACAACTTCAAGCAGCCTGGAGAGAGATACCGATCCTGGGCCCC
AGACAGGCAAGAGAGGTTCCTTAATCGATGGATTAAGGCTTTATGTGACC
CACGTGTCACCCATGAGGTTCGCAGCATATGGGTCTCTTACTGGTCTCAG
GCCGACAGATCTCTGGGTCAGAAGCTAGCTTCTCGTCTCAATGTGAGGCC
AAGCATTTGAAGGAGTCACTTGAACTGGAACACTGGATGCTTTTGACTTG
CCAAGAGTGAGCAGGGAGTGAACACCAAGGGTGCAGCTATGTGAAGAATT
TCGATCCTATGTTTGCTGTTGTATATTGTAATATAGAAAATAAACTAGCA
TGTTATGT
back to top