CF833006

Overview
NameCF833006
Unique NameCF833006
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833006 vs. ExPASy Swiss-Prot
Match: CYP1_CAEEL (Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhabditis elegans GN=cyn-1 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 4.511e-57
Identity = 109/166 (65.66%), Postives = 121/166 (72.89%), Query Frame = -3
Query:  196 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 693
            KV+FDV I  +PAGR+ M LF   VPKTAENFRALCTGEKG+G+ G  LH+KGS FHRIIP FM+Q           GESIYG KF DENF LKHTGPG LSMANAGP+TNGSQFFI TV T WLDG HVVFG+V  GM VV K+E  G ++G P   V IAD GE
Sbjct:   23 KVFFDVSIGEEPAGRVTMELFNDVVPKTAENFRALCTGEKGVGEQGVALHFKGSKFHRIIPEFMIQGGDFTRHNGTGGESIYGNKFKDENFDLKHTGPGCLSMANAGPNTNGSQFFICTVDTPWLDGGHVVFGQVTDGMSVVKKIEKMGSRSGAPAKTVTIADCGE 188          
BLAST of CF833006 vs. ExPASy Swiss-Prot
Match: CYPH_CATRO (Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 7.695e-57
Identity = 105/166 (63.25%), Postives = 123/166 (74.10%), Query Frame = -3
Query:  196 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 693
            +V+FD+ + G+PAGRIVM LF    P+TAENFRALCTGEKG G+SGKPLHYK S+FHR+IP FM Q           GESIYG KF DENF  KHTGPG+LSMANAGP+TNGSQFFI T  T WLDG+HVVFG+V+ GMDVV  +E  G  +G    KVV+ D G+
Sbjct:    5 RVFFDMSVGGQPAGRIVMELFADTTPRTAENFRALCTGEKGTGRSGKPLHYKDSSFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFADENFIKKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTAKKVVVEDCGQ 170          
BLAST of CF833006 vs. ExPASy Swiss-Prot
Match: CYPH_LUPLU (Peptidyl-prolyl cis-trans isomerase OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.313e-56
Identity = 106/166 (63.86%), Postives = 122/166 (73.49%), Query Frame = -3
Query:  196 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 693
            KV+FD+ IAG PAGRIVM L+    P+TAENFRALCTGEKG+G+SGKPLHYKGSTFHR+IP+FM Q            ESIYG KF DENF  +HTGPG+LSMANAG  TNGSQFFI T  T WLDG+HVVFGKV+ GM+VV  +E  G  +G     V IAD G+
Sbjct:    5 KVFFDMAIAGNPAGRIVMELYADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSTFHRVIPNFMCQGGDFTAGNGTGAESIYGAKFADENFIKRHTGPGILSMANAGAGTNGSQFFICTEKTEWLDGKHVVFGKVIEGMNVVRDIEKVGSGSGKTSRPVTIADCGQ 170          
BLAST of CF833006 vs. ExPASy Swiss-Prot
Match: PPI2_SYNY3 (Peptidyl-prolyl cis-trans isomerase slr1251 OS=Synechocystis sp. (strain PCC 6803) GN=slr1251 PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.819e-56
Identity = 104/167 (62.28%), Postives = 127/167 (76.05%), Query Frame = -3
Query:  196 NKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 696
            +KV+FD+ I    AGRIVM LF +  PKTAENFRALCTGEKG+GK+GKPLH+KGS FHR+I  FM Q           GESIYGEKF DENF+LKH  PGLLSMANAGP+TNGSQFF+T V   WLDG+HVVFG+V+ G++++ ++EA G Q+G  K  +VI+D GE
Sbjct:    3 SKVFFDITIGSDTAGRIVMELFDEVTPKTAENFRALCTGEKGVGKAGKPLHFKGSHFHRVITDFMAQGGDFTRGNGTGGESIYGEKFADENFQLKHDRPGLLSMANAGPNTNGSQFFLTFVPCPWLDGKHVVFGEVVEGLEILEQLEANGSQSGQTKQAIVISDCGE 169          
BLAST of CF833006 vs. ExPASy Swiss-Prot
Match: CYPH_BRANA (Peptidyl-prolyl cis-trans isomerase OS=Brassica napus GN=CYP PE=2 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 3.819e-56
Identity = 107/169 (63.31%), Postives = 122/169 (72.19%), Query Frame = -3
Query:  196 ITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 702
            +  KVYFD+ +  K AGRIVM L+   VP+TAENFRALCTGE+GIGKSGKPLHYKGS FHR+IP FM Q           GESIYG KF DENF  KHTGPG+LSM NAG +TNGSQFFI T  TSWLDG+HVVFG+V+ GMDVV  +E  G  +G    KVV  D G+
Sbjct:    2 VNPKVYFDMTVGDKAAGRIVMELYADTVPETAENFRALCTGERGIGKSGKPLHYKGSAFHRVIPKFMCQGGDFTAGNGTGGESIYGMKFKDENFVKKHTGPGILSMRNAGSNTNGSQFFICTEKTSWLDGKHVVFGQVVEGMDVVRDIEKVGSDSGRTSKKVVTCDCGQ 170          
BLAST of CF833006 vs. ExPASy Swiss-Prot
Match: CP19A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Arabidopsis thaliana GN=CYP19-1 PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.819e-56
Identity = 106/166 (63.86%), Postives = 123/166 (74.10%), Query Frame = -3
Query:  196 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 693
            KVYFD+ + GK AGRIVM L+    P+TAENFRALCTGE+GIGK GKPLHYKGS+FHR+IP FM Q           GESIYG KF DENF  KHTGPG+LSMANAG +TNGSQFFI T  TSWLDG+HVVFG+V+ G++VV  +E  G  +G     VVIAD G+
Sbjct:    6 KVYFDMTVGGKSAGRIVMELYADTTPETAENFRALCTGERGIGKQGKPLHYKGSSFHRVIPKFMCQGGDFTAGNGTGGESIYGSKFKDENFIKKHTGPGILSMANAGANTNGSQFFICTEKTSWLDGKHVVFGQVVEGLNVVRDIEKVGSDSGRTSKPVVIADCGQ 171          
BLAST of CF833006 vs. ExPASy Swiss-Prot
Match: CP19C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana GN=CYP19-3 PE=1 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 1.111e-55
Identity = 107/166 (64.46%), Postives = 120/166 (72.29%), Query Frame = -3
Query:  196 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 693
            KV+FD+ I    AGR+VM LF    P+TA NFRALCTGE GIGK+GK LHYKGS FHRIIP FM Q           GESIYG KF DENFKLKHTGPG+LSMAN+GP+TNGSQFFI T  TSWLDG+HVVFGKV+ G +VV  +E  G   G P  +VVI D GE
Sbjct:    5 KVFFDILIGKMKAGRVVMELFADVTPRTANNFRALCTGENGIGKAGKALHYKGSAFHRIIPGFMCQGGDFTRGNGTGGESIYGSKFEDENFKLKHTGPGILSMANSGPNTNGSQFFICTEKTSWLDGKHVVFGKVVDGYNVVKAMEDVGSDMGNPSERVVIEDCGE 170          
BLAST of CF833006 vs. ExPASy Swiss-Prot
Match: PPID_NEUCR (41 kDa peptidyl-prolyl cis-trans isomerase OS=Neurospora crassa GN=cyp-41 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.475e-55
Identity = 109/176 (61.93%), Postives = 126/176 (71.59%), Query Frame = -3
Query:  196 SDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 723
            S  ++K+  ++V+FD+ I GK AGRIV  L+   VPKTAENFRALCTGEKG+GK GKPLHYKGSTFHR+I  FM+Q           GESIYG KF DENF+LKH  P LLSMANAGP TNGSQFF+TTV T  LDG+HVVFG+VLSG  VV ++E    Q   P    VIAD GE
Sbjct:    3 STDDVKQARSRVFFDITIGGKAAGRIVFELYNDIVPKTAENFRALCTGEKGVGKLGKPLHYKGSTFHRVIKQFMIQGGDFTAGNGTGGESIYGAKFEDENFQLKHDRPFLLSMANAGPGTNGSQFFVTTVPTPHLDGKHVVFGEVLSGKSVVRQIENLKTQGDKPTKDAVIADCGE 178          
BLAST of CF833006 vs. ExPASy Swiss-Prot
Match: CYP5_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizopus oryzae GN=cyp5 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.229e-54
Identity = 106/166 (63.86%), Postives = 119/166 (71.69%), Query Frame = -3
Query:  196 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 693
            KV+FDV + GKP+GR+   LF   VPKTAENFRALCTGEKG G SGKPLHYKGS FHRIIP FM Q           GESIYG KF DENF LKHTG G+LSMANAGP+TNGSQFFIT   T WLDG H VFG+++ G  V+  +E  G Q+G P +KV I D GE
Sbjct:    8 KVFFDVAVNGKPSGRLTFKLFSDTVPKTAENFRALCTGEKGTGVSGKPLHYKGSHFHRIIPGFMAQGGDFTMGNGRGGESIYGHKFNDENFTLKHTGKGVLSMANAGPNTNGSQFFITFDKTPWLDGNHTVFGQLVEGNQVLEILEQHGTQSGMPTAKVEIVDCGE 173          
BLAST of CF833006 vs. ExPASy Swiss-Prot
Match: PPIA_DICDI (Peptidyl-prolyl cis-trans isomerase A OS=Dictyostelium discoideum GN=ppiA PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.096e-54
Identity = 106/166 (63.86%), Postives = 121/166 (72.89%), Query Frame = -3
Query:  196 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 693
            +V+FD+ I G  AG++VM L+   VPKTAENFRALCTGEKGIGKSGKPL YKGS+FHR+I +FM Q           GESIYG KF DENFKLKH G G LSMANAG +TNGSQFFI    T WLDG+HVVFG V  GMDVV K+EA G Q+G     VVIA+ G+
Sbjct:   13 RVFFDITIGGVEAGKVVMELYANTVPKTAENFRALCTGEKGIGKSGKPLSYKGSSFHRVITNFMCQGGDFTMGNGTGGESIYGNKFADENFKLKHFGQGTLSMANAGANTNGSQFFICVAPTDWLDGKHVVFGFVTEGMDVVKKMEAAGSQSGKTTKPVVIANCGQ 178          
The following BLAST results are available for this feature:
BLAST of CF833006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
CYP1_CAEEL4.511e-5765.66Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhab... [more]
CYPH_CATRO7.695e-5763.25Peptidyl-prolyl cis-trans isomerase OS=Catharanthu... [more]
CYPH_LUPLU1.313e-5663.86Peptidyl-prolyl cis-trans isomerase OS=Lupinus lut... [more]
PPI2_SYNY33.819e-5662.28Peptidyl-prolyl cis-trans isomerase slr1251 OS=Syn... [more]
CYPH_BRANA3.819e-5663.31Peptidyl-prolyl cis-trans isomerase OS=Brassica na... [more]
CP19A_ARATH3.819e-5663.86Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Ara... [more]
CP19C_ARATH1.111e-5564.46Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Ara... [more]
PPID_NEUCR2.475e-5561.9341 kDa peptidyl-prolyl cis-trans isomerase OS=Neur... [more]
CYP5_RHIOR1.229e-5463.86Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizop... [more]
PPIA_DICDI2.096e-5463.86Peptidyl-prolyl cis-trans isomerase A OS=Dictyoste... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02M23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02M23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833006 ID=CF833006; Name=CF833006; organism=Citrus sinensis; type=EST; length=815bp
TTTTTTTTTTTTTTTTTGAGAAAAGGATCCCCTTAAAATGAACCATTAAC
TTGGCAAACAACCTAGGACATTTTAAAATGTCTATTACATGATAAATAGG
CAAATTAAGAGTATCTTCATGAAGGTTGAAAAGACGAGAGGATTAAAAAG
GTGTATAGCGTAATTATATAATTATGGGGGAAATCACAGAGGAAGTTCAC
CGCTGTCTGCAATGACGACTTTGCTCTTCGGAGTGCCATTCTGCCTCCCT
TCAGCTTCAACCTTGTAAACTACATCCATCCCCGATAGCACCTTTCCAAA
TACAACATGCCTGCCATCCAACCAGCTAGTTGTCACAGTTGTAATGAAGA
ATTGTGAACCATTGGTGTCTGGCCCAGCATTTGCCATTGACAAAAGCCCT
GGGCCGGTGTGCTTCAGTTTGAAATTTTCGTCAGGGAACTTCTCTCCATA
AATTGACTCTCCACCTCTTCCATCACCAAGAGTGAAATCACCTCCTTGAA
GCATAAAGCTGGGAATAATCCTATGAAACGTACTTCCCTTGTAGTGGAGT
GGCTTCCCACTCTTGCCAATCCCTTTCTCCCCTGTGCACAAAGCTCGGAA
ATTTTCTGCAGTTTTAGGGACTGCCTTTCCAAAGAGACCCATTACAATAC
GTCCGGCAGGTTTTCCGGCAATCTCAACGTCAAAGTAAACTTTGTTTGTG
ATTTCTTTCAAATTCTGATCCGATTTCTTCGCCTGAATTGAAGAGAAAGT
GGCCAACAGGACAACAGCCCATAGCATCGTGAGTGGAAGCAAATTTGTCG
AAGCCATGTATCACT
back to top