CF833006

Overview
NameCF833006
Unique NameCF833006
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2181 contig Csv1_Contig2181:65..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833006 vs. ExPASy Swiss-Prot
Match: PPIL3_EMENI (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Emericella nidulans GN=cyp10 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.286e-11
Identity = 62/186 (33.33%), Postives = 78/186 (41.94%), Query Frame = -3
Query:  214 GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGE----------------SIYGEKFPDENF---KLKHTGPGLLSMAN--------------AGPDTNGSQFFITTVTTSWLDGRHVVFGKVLS------GMDVVYKVEAEGRQNGTPKSKVV 654
            G + + LF +AVPKTAENF ALC              Y  + FHR+IP FM+Q            +                SIY     ++      L+H   G+LSMA+               GP  NGSQFFIT      LDG   VFGKVL+      G DV+ K+E +       K KVV
Sbjct:   10 GDLKVELFCEAVPKTAENFIALCAAGA----------YNDTPFHRLIPGFMIQGGDISLGPAANSQGTTPMLPFDDIPKGGTSIYHPSALNQEIHLPALRHNTRGILSMASRPVKNQTAPGSQGATGPTINGSQFFITFAAAPHLDGSSTVFGKVLNLTAEDEGGDVLSKLE-KANVKTDKKGKVV 184          
BLAST of CF833006 vs. ExPASy Swiss-Prot
Match: PPIL4_MOUSE (Peptidyl-prolyl cis-trans isomerase-like 4 OS=Mus musculus GN=Ppil4 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.383e-11
Identity = 46/141 (32.62%), Postives = 67/141 (47.52%), Query Frame = -3
Query:  259 GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENF--------KLKHTGPGLLSMANAGPDTNGSQFFITT-VTTSWLDGRHVVFGKVLSGMDVVYKV 654
            G +V+ L+ +  P+   NF  LC          K  +Y     H +   F++Q            ESI+G+ + D+          ++KH   G +SM N G D +GSQF ITT     +LDG H VFG+V  GMD+V K+
Sbjct:   10 GDVVIDLYTEERPRACLNFLKLC----------KIKYYNYCLIHNVQRDFIIQTGDPTGTGRGG-ESIFGQLYGDQASFFEAEKVPRIKHKKKGTVSMVNNGSDQHGSQFLITTGENLDYLDGVHTVFGEVTEGMDIVKKI 139          
BLAST of CF833006 vs. ExPASy Swiss-Prot
Match: PPIL4_HUMAN (Peptidyl-prolyl cis-trans isomerase-like 4 OS=Homo sapiens GN=PPIL4 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.337e-11
Identity = 45/141 (31.91%), Postives = 67/141 (47.52%), Query Frame = -3
Query:  259 GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENF--------KLKHTGPGLLSMANAGPDTNGSQFFITT-VTTSWLDGRHVVFGKVLSGMDVVYKV 654
            G +V+ L+ +  P+   NF  LC          K  +Y     H +   F++Q            ESI+G+ + D+          ++KH   G +SM N G D +GSQF ITT     +LDG H VFG+V  GMD++ K+
Sbjct:   10 GDVVIDLYTEERPRACLNFLKLC----------KIKYYNYCLIHNVQRDFIIQTGDPTGTGRGG-ESIFGQLYGDQASFFEAEKVPRIKHKKKGTVSMVNNGSDQHGSQFLITTGENLDYLDGVHTVFGEVTEGMDIIKKI 139          
The following BLAST results are available for this feature:
BLAST of CF833006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
PPIL3_EMENI1.286e-1133.33Peptidyl-prolyl cis-trans isomerase-like 3 OS=Emer... [more]
PPIL4_MOUSE6.383e-1132.62Peptidyl-prolyl cis-trans isomerase-like 4 OS=Mus ... [more]
PPIL4_HUMAN8.337e-1131.91Peptidyl-prolyl cis-trans isomerase-like 4 OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02M23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02M23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833006 ID=CF833006; Name=CF833006; organism=Citrus sinensis; type=EST; length=815bp
TTTTTTTTTTTTTTTTTGAGAAAAGGATCCCCTTAAAATGAACCATTAAC
TTGGCAAACAACCTAGGACATTTTAAAATGTCTATTACATGATAAATAGG
CAAATTAAGAGTATCTTCATGAAGGTTGAAAAGACGAGAGGATTAAAAAG
GTGTATAGCGTAATTATATAATTATGGGGGAAATCACAGAGGAAGTTCAC
CGCTGTCTGCAATGACGACTTTGCTCTTCGGAGTGCCATTCTGCCTCCCT
TCAGCTTCAACCTTGTAAACTACATCCATCCCCGATAGCACCTTTCCAAA
TACAACATGCCTGCCATCCAACCAGCTAGTTGTCACAGTTGTAATGAAGA
ATTGTGAACCATTGGTGTCTGGCCCAGCATTTGCCATTGACAAAAGCCCT
GGGCCGGTGTGCTTCAGTTTGAAATTTTCGTCAGGGAACTTCTCTCCATA
AATTGACTCTCCACCTCTTCCATCACCAAGAGTGAAATCACCTCCTTGAA
GCATAAAGCTGGGAATAATCCTATGAAACGTACTTCCCTTGTAGTGGAGT
GGCTTCCCACTCTTGCCAATCCCTTTCTCCCCTGTGCACAAAGCTCGGAA
ATTTTCTGCAGTTTTAGGGACTGCCTTTCCAAAGAGACCCATTACAATAC
GTCCGGCAGGTTTTCCGGCAATCTCAACGTCAAAGTAAACTTTGTTTGTG
ATTTCTTTCAAATTCTGATCCGATTTCTTCGCCTGAATTGAAGAGAAAGT
GGCCAACAGGACAACAGCCCATAGCATCGTGAGTGGAAGCAAATTTGTCG
AAGCCATGTATCACT
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