CF833006

Overview
NameCF833006
Unique NameCF833006
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2181 contig Csv1_Contig2181:65..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833006 vs. ExPASy Swiss-Prot
Match: PPIB_ASPFU (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus fumigatus GN=cpr2 PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 8.241e-51
Identity = 106/171 (61.99%), Postives = 123/171 (71.93%), Query Frame = -3
Query:  196 EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNG-TPKSKVVIADSGE 705
            +IT+KV+FD+E   KP GRIV+GL+GK VPKTAENFRAL TGEKG G       Y+GSTFHR+I SFM+Q           G+SIYGEKF DENFKL+HT  GLLSMANAG DTNGSQFFITTV T WLDGRHVVFG+VL G +VV ++E   +  G  P   V I  SG+
Sbjct:   33 KITSKVFFDIEHGDKPLGRIVLGLYGKTVPKTAENFRALATGEKGFG-------YEGSTFHRVIKSFMIQGGDFTRGDGTGGKSIYGEKFADENFKLRHTRKGLLSMANAGKDTNGSQFFITTVPTPWLDGRHVVFGEVLEGYEVVEQIENVPKGPGDKPAETVKIVKSGQ 196          
BLAST of CF833006 vs. ExPASy Swiss-Prot
Match: PPIE_HUMAN (Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.076e-50
Identity = 104/179 (58.10%), Postives = 125/179 (69.83%), Query Frame = -3
Query:  196 AKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 732
            AKK+  N      +VY D++I  KPAGRI M L    VP TAENFR LCT EKG G       +KGS+FHRIIP FM Q           G+SIYG+KF DENF LKHTGPGLLSMAN+GP+TNGSQFF+T   T WLDG+HVVFG+V  G+DV+ ++EA+G ++G PK KV+IAD GE
Sbjct:  133 AKKARSN-----PQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 299          
BLAST of CF833006 vs. ExPASy Swiss-Prot
Match: PPIB_YARLI (Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia lipolytica GN=CPR2 PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.076e-50
Identity = 110/191 (57.59%), Postives = 131/191 (68.59%), Query Frame = -3
Query:  196 VVLLATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVVIADSGE 765
            V LLA F  +Q  +++ +  EIT+KVYFD++   +  G+IVMGL+G  VPKT ENFRALCTGE G G       YKGS FHR+I +FM+Q           GESIYG KFPDENF+LKHT P  LSMANAG DTNGSQFFITTV TSWLDG+HVVFG+VL G D+V  +E A       PK  + IAD+GE
Sbjct:   12 VALLAFF--VQPAQAEPDA-EITHKVYFDIKQGEESLGKIVMGLYGDVVPKTVENFRALCTGETGKG-------YKGSKFHRVIKNFMIQGGDFTRGDGTGGESIYGRKFPDENFQLKHTKPYKLSMANAGRDTNGSQFFITTVVTSWLDGKHVVFGEVLEGQDIVDAIENAPTGARSNPKVDITIADAGE 192          
BLAST of CF833006 vs. ExPASy Swiss-Prot
Match: PPIB_SCHMA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma mansoni GN=CYP PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.076e-50
Identity = 100/177 (56.50%), Postives = 127/177 (71.75%), Query Frame = -3
Query:  199 KSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQN-GTPKSKVVIADSG 726
            +S+ N  ++T+KV+FD+E+ GKP  RI++GLFGK VPKT ENF+ L  G +   K G+   YKGSTFHR+I SFM+Q           G SIYG++FPDENFKL+H G G LSMANAGPDTNGSQFFITTV TSWLDG+HVVFGKV+ GM++V ++E+E   +   P   + IA  G
Sbjct:   22 RSEANGPKVTDKVFFDIEVDGKPLARIIIGLFGKTVPKTVENFKQLSIGTQL--KDGRTASYKGSTFHRVIKSFMIQGGDFTNHDGTGGFSIYGDRFPDENFKLRHVGAGWLSMANAGPDTNGSQFFITTVKTSWLDGKHVVFGKVVEGMNIVRQIESETTDSRDRPVKSIKIASCG 196          
BLAST of CF833006 vs. ExPASy Swiss-Prot
Match: CP20C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic OS=Arabidopsis thaliana GN=CYP20-3 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.076e-50
Identity = 107/171 (62.57%), Postives = 121/171 (70.76%), Query Frame = -3
Query:  196 EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEA-EGRQNGTPKSKVVIADSGE 705
            ++TNKVYFDVEI G+ AGRIVMGLFG+ VPKT ENFRALCTGEK  G       YKGS+FHRII  FM+Q           G SIYG KF DENF LKHTGPG+LSMANAGP+TNGSQFFI TV TSWLD +HVVFG+V+ GM +V  +E+ E R    PK    I   GE
Sbjct:   92 KVTNKVYFDVEIGGEVAGRIVMGLFGEVVPKTVENFRALCTGEKKYG-------YKGSSFHRIIKDFMIQGGDFTEGNGTGGISIYGAKFEDENFTLKHTGPGILSMANAGPNTNGSQFFICTVKTSWLDNKHVVFGQVIEGMKLVRTLESQETRAFDVPKKGCRIYACGE 255          
BLAST of CF833006 vs. ExPASy Swiss-Prot
Match: PPIE_PONAB (Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.836e-50
Identity = 104/179 (58.10%), Postives = 124/179 (69.27%), Query Frame = -3
Query:  196 AKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 732
            AKK+  N      +VY D++I  KPAGRI M L    VP TAENFR LCT EKG G       +KGS+FHRIIP FM Q           G+SIYG+KF DENF LKHTGPGLLSMAN+GP+TNGSQFF+T   T WLDG+HVVFG+V  G+DV+ ++EA G ++G PK KV+IAD GE
Sbjct:  133 AKKARSN-----PQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEARGSKDGKPKQKVIIADCGE 299          
BLAST of CF833006 vs. ExPASy Swiss-Prot
Match: PPIE_MOUSE (Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus GN=Ppie PE=2 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.836e-50
Identity = 104/179 (58.10%), Postives = 125/179 (69.83%), Query Frame = -3
Query:  196 AKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 732
            AKK+  N      +VY D++I  KPAGRI M L    VP TAENFR LCT EKG G       +KGS+FHRIIP FM Q           G+SIYG+KF DENF LKHTGPGLLSMAN+GP+TNGSQFF+T   T WLDG+HVVFG+V  G+DV+ ++EA+G ++G PK KV+IAD GE
Sbjct:  133 AKKARSN-----PQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVMIADCGE 299          
BLAST of CF833006 vs. ExPASy Swiss-Prot
Match: PPID_RHIOR (Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus oryzae GN=cyp12 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.836e-50
Identity = 107/166 (64.46%), Postives = 115/166 (69.28%), Query Frame = -3
Query:  196 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 693
            +VYFD+ I  KP GRIV  LF   VPKTAENFRALCTGEKG GKSGKPL Y+GS FHRII +FM+Q           GESIYGEKF DENF LKH  P LLSMANAGP TNGSQFFITTV T  LDG+HVVFGKVL G  VV  +E     +  P    VIA  GE
Sbjct:    5 RVYFDITIGNKPEGRIVFELFKDIVPKTAENFRALCTGEKGEGKSGKPLSYQGSLFHRIIKNFMIQGGDFTAGNGTGGESIYGEKFEDENFVLKHEKPFLLSMANAGPGTNGSQFFITTVPTPHLDGKHVVFGKVLKGKAVVRALENLETVSDRPVEDAVIAKCGE 170          
BLAST of CF833006 vs. ExPASy Swiss-Prot
Match: PPID_ASPFU (Peptidyl-prolyl cis-trans isomerase D OS=Aspergillus fumigatus GN=cpr6 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.836e-50
Identity = 102/170 (60.00%), Postives = 119/170 (70.00%), Query Frame = -3
Query:  196 KVYFDVEIAGKPAGRIVMGL----FGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVIADSGE 693
            +VYFD++I  + AGRI + L    F   VPKTAENFRALCTGEKG+GK  KPL YKGS FHR+I  FM+Q           GESIYGEKFPDENF+LKH  P LLSMAN+GP TNGSQFFITTV T  LDG+HVVFG+V++G  +V K+E    Q   P + V I D GE
Sbjct:    9 RVYFDIQIGSQKAGRIALELVRLPFNDVVPKTAENFRALCTGEKGVGKQRKPLSYKGSIFHRVIKQFMIQGGDFTNFNGTGGESIYGEKFPDENFELKHDRPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSIVRKIENMPTQADKPTTDVTIVDCGE 178          
BLAST of CF833006 vs. ExPASy Swiss-Prot
Match: PPIB_RAT (Peptidyl-prolyl cis-trans isomerase B OS=Rattus norvegicus GN=Ppib PE=2 SV=3)

HSP 1 Score: 199.519 bits (506), Expect = 1.836e-50
Identity = 103/171 (60.23%), Postives = 118/171 (69.01%), Query Frame = -3
Query:  196 EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVVIADSGE 705
            ++T KVYFD +I  +P GR+  GLFGK VPKT +NF AL TGEKG G       YK S FHR+I  FM+Q           G+SIYGE+FPDENFKLKH GPG +SMANAG DTNGSQFFITTV TSWLDG+HVVFGKVL GMDVV KVE  +      P   V+I D G+
Sbjct:   41 KVTVKVYFDFQIGDEPVGRVTFGLFGKTVPKTVDNFVALATGEKGFG-------YKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVIIVDCGK 204          
The following BLAST results are available for this feature:
BLAST of CF833006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
PPIB_ASPFU8.241e-5161.99Peptidyl-prolyl cis-trans isomerase B OS=Aspergill... [more]
PPIE_HUMAN1.076e-5058.10Peptidyl-prolyl cis-trans isomerase E OS=Homo sapi... [more]
PPIB_YARLI1.076e-5057.59Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia ... [more]
PPIB_SCHMA1.076e-5056.50Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]
CP20C_ARATH1.076e-5062.57Peptidyl-prolyl cis-trans isomerase CYP20-3, chlor... [more]
PPIE_PONAB1.836e-5058.10Peptidyl-prolyl cis-trans isomerase E OS=Pongo abe... [more]
PPIE_MOUSE1.836e-5058.10Peptidyl-prolyl cis-trans isomerase E OS=Mus muscu... [more]
PPID_RHIOR1.836e-5064.46Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus ... [more]
PPID_ASPFU1.836e-5060.00Peptidyl-prolyl cis-trans isomerase D OS=Aspergill... [more]
PPIB_RAT1.836e-5060.23Peptidyl-prolyl cis-trans isomerase B OS=Rattus no... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02M23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02M23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833006 ID=CF833006; Name=CF833006; organism=Citrus sinensis; type=EST; length=815bp
TTTTTTTTTTTTTTTTTGAGAAAAGGATCCCCTTAAAATGAACCATTAAC
TTGGCAAACAACCTAGGACATTTTAAAATGTCTATTACATGATAAATAGG
CAAATTAAGAGTATCTTCATGAAGGTTGAAAAGACGAGAGGATTAAAAAG
GTGTATAGCGTAATTATATAATTATGGGGGAAATCACAGAGGAAGTTCAC
CGCTGTCTGCAATGACGACTTTGCTCTTCGGAGTGCCATTCTGCCTCCCT
TCAGCTTCAACCTTGTAAACTACATCCATCCCCGATAGCACCTTTCCAAA
TACAACATGCCTGCCATCCAACCAGCTAGTTGTCACAGTTGTAATGAAGA
ATTGTGAACCATTGGTGTCTGGCCCAGCATTTGCCATTGACAAAAGCCCT
GGGCCGGTGTGCTTCAGTTTGAAATTTTCGTCAGGGAACTTCTCTCCATA
AATTGACTCTCCACCTCTTCCATCACCAAGAGTGAAATCACCTCCTTGAA
GCATAAAGCTGGGAATAATCCTATGAAACGTACTTCCCTTGTAGTGGAGT
GGCTTCCCACTCTTGCCAATCCCTTTCTCCCCTGTGCACAAAGCTCGGAA
ATTTTCTGCAGTTTTAGGGACTGCCTTTCCAAAGAGACCCATTACAATAC
GTCCGGCAGGTTTTCCGGCAATCTCAACGTCAAAGTAAACTTTGTTTGTG
ATTTCTTTCAAATTCTGATCCGATTTCTTCGCCTGAATTGAAGAGAAAGT
GGCCAACAGGACAACAGCCCATAGCATCGTGAGTGGAAGCAAATTTGTCG
AAGCCATGTATCACT
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