CF833008

Overview
NameCF833008
Unique NameCF833008
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833008 vs. ExPASy Swiss-Prot
Match: THS_DESSY (Thermosome subunit OS=Desulfurococcus sp. (strain SY) GN=ths PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.236e-21
Identity = 55/151 (36.42%), Postives = 92/151 (60.93%), Query Frame = -1
Query:  268 RGASKDLSNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMNALQGKHVHGENAWIGIDGNSGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIK 720
            RG ++ + +EVER L+DA+ V ++I+++ K++P GGA E+ ++  L + +  + G E+   EA A A + IPRTLA+N G++ + T+  +   H   +   IG+D   G  +DM E+ +     V  Q  K+A EAA M+LRIDD+++  K
Sbjct:  377 RGGTEHVVDEVERALEDAVKVVKDIVEDGKILPAGGAPEIELAIKLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPVETLVKVIAAHKE-KGPTIGVDVFEGEPADMMEKGVIAPLRVPKQAIKSASEAAIMILRIDDVIAASK 526          
BLAST of CF833008 vs. ExPASy Swiss-Prot
Match: THSB_PYRKO (Thermosome subunit beta OS=Pyrococcus kodakaraensis GN=thsB PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.236e-21
Identity = 60/161 (37.27%), Postives = 96/161 (59.63%), Query Frame = -1
Query:  244 RGASKDLSNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMNALQGKHVHGENAWIGIDGNSGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV--SGIKKKQAPGSG 720
            RG ++ + +EVER L+DA+ V ++I+++ K+V  GGA E+ ++  L + +  + G E+   EA A A + IPRTLA+N G++ I T+  +   H   +   IG+D   G  +DM ER +     V  Q  K+A EAA M+LRIDD++  S ++K +  G G
Sbjct:  377 RGGTEHVVDEVERALEDAVKVVKDIVEDGKIVAAGGAPEIELAIRLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPIETLVKVIAAHKE-KGPTIGVDVFEGEPADMLERGVIAPVRVPKQAIKSASEAAIMILRIDDVIAASKLEKDKEGGKG 536          
BLAST of CF833008 vs. ExPASy Swiss-Prot
Match: THSA_AERPE (Thermosome subunit alpha OS=Aeropyrum pernix GN=thsA PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.226e-21
Identity = 57/162 (35.19%), Postives = 96/162 (59.26%), Query Frame = -1
Query:  238 RGASKDLSNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMNALQGKHVHGENAWIGIDGNSGAI-SDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQT 720
            RGA+  L +E ERN++DA+   RNI++ PK+V GGGA E+ ++  LK+ + ++ G ++   EA A A E IP  LA++ G++ +  +  L+  H  G   + G++   G I  DM +  +++   VK Q  K+A EAA  +L+IDD+++    K+    G+T
Sbjct:  379 RGANDMLLDEAERNIKDALHGLRNILREPKIVGGGGAVEVELALKLKEFARTVGGKQQLAIEAYAEALETIPTVLAESAGMDALEALLKLRSLHSQGYK-FAGVNVLEGKIEEDMTKINVYEPVLVKKQVIKSASEAAISILKIDDVIAAAPPKKKEKKGKT 539          
BLAST of CF833008 vs. ExPASy Swiss-Prot
Match: TCPE2_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.226e-21
Identity = 52/148 (35.14%), Postives = 88/148 (59.46%), Query Frame = -1
Query:  277 RGASKDLSNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMNALQGKHVHGENAWIGIDGNSGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 720
            RG +K +  E +R++ DA+ VARN+I N  +V GGG+ E++ S  ++  +    G+E++   A A A +AIP  LA+N G+  I T+  ++ +HV   N+  GID N    +DMKE+ +++    K Q    A +   M+L+IDD+++
Sbjct:  384 RGGNKMMIEETKRSIHDALCVARNLIINNSIVYGGGSAEISCSIAVEAAADRHPGVEQYAIRAFADALDAIPLALAENSGLPPIDTLTVVKSQHVKENNSRCGIDCNDVGTNDMKEQNVFETLIGKQQQILLATQVVKMILKIDDVIT 531          
BLAST of CF833008 vs. ExPASy Swiss-Prot
Match: TCPE1_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.226e-21
Identity = 52/148 (35.14%), Postives = 88/148 (59.46%), Query Frame = -1
Query:  277 RGASKDLSNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMNALQGKHVHGENAWIGIDGNSGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 720
            RG +K +  E +R++ DA+ VARN+I N  +V GGG+ E++ S  ++  +    G+E++   A A A +AIP  LA+N G+  I T+  ++ +HV   N+  GID N    +DMKE+ +++    K Q    A +   M+L+IDD+++
Sbjct:  384 RGGNKMMIEETKRSIHDALCVARNLIINNSIVYGGGSAEISCSIAVEAAADRHPGVEQYAIRAFADALDAIPLALAENSGLPPIDTLTVVKSQHVKENNSRCGIDCNDVGTNDMKEQNVFETLIGKQQQILLATQVVKMILKIDDVIT 531          
BLAST of CF833008 vs. ExPASy Swiss-Prot
Match: TCPE_ARATH (T-complex protein 1 subunit epsilon OS=Arabidopsis thaliana GN=At1g24510 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.519e-21
Identity = 49/148 (33.11%), Postives = 87/148 (58.78%), Query Frame = -1
Query:  277 RGASKDLSNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMNALQGKHVHGENAWIGIDGNSGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 720
            RG +K +  E +R++ DA+ VARN+I+N  +V GGGA E+  S  +   +    G+E++   A A A +++P  LA+N G+  I T++A++ + +     + GID N    +DM+E+ +++    K Q    A +   M+L+IDD++S
Sbjct:  384 RGGNKMMIEETKRSIHDALCVARNLIRNKSIVYGGGAAEIACSLAVDAAADKYPGVEQYAIRAFAEALDSVPMALAENSGLQPIETLSAVKSQQIKENIPFYGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 531          
BLAST of CF833008 vs. ExPASy Swiss-Prot
Match: TCPH_PONAB (T-complex protein 1 subunit eta OS=Pongo abelii GN=CCT7 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.208e-21
Identity = 57/169 (33.73%), Postives = 88/169 (52.07%), Query Frame = -1
Query:  226 RGASKDLSNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMNALQGKHVHGENAWIGIDGNSGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV----SGIKKKQAPGSGQTPLKP 720
            RG ++    E ER+L DA+ + R  IKN  +V GGGA E+ +S  L+  S +I G ++    A A A E IPR L  N G +    +N L+ +H  G   W G+D N+  I+D  E  +W+   V+      A EAAC+++ +D+ +    S +    A G G+   +P
Sbjct:  375 RGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQG-GTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVDAPAAAGRGRGRGRP 542          
BLAST of CF833008 vs. ExPASy Swiss-Prot
Match: TCPH_HUMAN (T-complex protein 1 subunit eta OS=Homo sapiens GN=CCT7 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.208e-21
Identity = 57/169 (33.73%), Postives = 88/169 (52.07%), Query Frame = -1
Query:  226 RGASKDLSNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMNALQGKHVHGENAWIGIDGNSGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV----SGIKKKQAPGSGQTPLKP 720
            RG ++    E ER+L DA+ + R  IKN  +V GGGA E+ +S  L+  S +I G ++    A A A E IPR L  N G +    +N L+ +H  G   W G+D N+  I+D  E  +W+   V+      A EAAC+++ +D+ +    S +    A G G+   +P
Sbjct:  375 RGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQG-GTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVDAPTAAGRGRGRGRP 542          
BLAST of CF833008 vs. ExPASy Swiss-Prot
Match: THSB_HALSA (Thermosome subunit beta OS=Halobacterium salinarium GN=thsB PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.414e-21
Identity = 52/148 (35.14%), Postives = 93/148 (62.84%), Query Frame = -1
Query:  277 RGASKDLSNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMNALQGKHVHGENAWIGIDGNSGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 720
            RG++  + +E+ER + DA+ V+   + + +++PGGGATE+ V++ L+  + S+ G E+   EA A + E +PR LA+N G++ I T+  L+  H + ++  IG++  SG + D  E  + +  + K Q   +A EAA ++L+IDDI+S
Sbjct:  379 RGSTDHVVDELERGVSDALDVSAQTLSDGRVLPGGGATEVEVASRLRDFADSVSGREQLAVEAFADSLELVPRVLAENAGLDSIDTLVDLRSAHENDDDEHIGLNVLSGDLEDTFEAGVVEPAHAKEQAVTSASEAANLVLKIDDIIS 526          
BLAST of CF833008 vs. ExPASy Swiss-Prot
Match: TCPH_BOVIN (T-complex protein 1 subunit eta OS=Bos taurus GN=CCT7 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.414e-21
Identity = 56/164 (34.15%), Postives = 86/164 (52.44%), Query Frame = -1
Query:  241 RGASKDLSNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMNALQGKHVHGENAWIGIDGNSGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV----SGIKKKQAPGSGQ 720
            RG ++    E ER+L DA+ + R  IKN  +V GGGA E+ +S  L+  S +I G ++    A A A E IPR L  N G +    +N L+ +H  G   W G+D N+  I+D  E  +W+   V+      A EAAC+++ +D+ +    S +    A G G+
Sbjct:  375 RGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQG-GMWYGVDINTEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVDASPAAGRGR 537          
The following BLAST results are available for this feature:
BLAST of CF833008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
THS_DESSY3.236e-2136.42Thermosome subunit OS=Desulfurococcus sp. (strain ... [more]
THSB_PYRKO3.236e-2137.27Thermosome subunit beta OS=Pyrococcus kodakaraensi... [more]
THSA_AERPE4.226e-2135.19Thermosome subunit alpha OS=Aeropyrum pernix GN=th... [more]
TCPE2_AVESA4.226e-2135.14T-complex protein 1 subunit epsilon OS=Avena sativ... [more]
TCPE1_AVESA4.226e-2135.14T-complex protein 1 subunit epsilon OS=Avena sativ... [more]
TCPE_ARATH5.519e-2133.11T-complex protein 1 subunit epsilon OS=Arabidopsis... [more]
TCPH_PONAB7.208e-2133.73T-complex protein 1 subunit eta OS=Pongo abelii GN... [more]
TCPH_HUMAN7.208e-2133.73T-complex protein 1 subunit eta OS=Homo sapiens GN... [more]
THSB_HALSA9.414e-2135.14Thermosome subunit beta OS=Halobacterium salinariu... [more]
TCPH_BOVIN9.414e-2134.15T-complex protein 1 subunit eta OS=Bos taurus GN=C... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02M24_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833008 ID=CF833008; Name=CF833008; organism=Citrus sinensis; type=EST; length=720bp
AGTGTCCCCAATGAAATTATGAAATTGCAAAAGTACCATCCACCCTTTAA
TCAGATAAATAAAAAATATTAAAATACATAAGTTTCCTGGAAGAATAAAA
TGGACCGCCAACAGAACAAGAAGCCAGCATTTTTTCAAAAATTTAACTGC
ATAGTCAGTCAACAGTAAAGTTGTCTAGGCAGGGAGTATTTGCTCACTGT
CTGCATCTGCCTCCGTCTCAATCTGAGGCTTCAATGGAGTTTGGCCTGAC
CCAGGGGCCTGTTTCTTCTTAATGCCACTGACAATGTCATCAATCCTCAG
AAGCATGCAAGCAGCTTCAATTGCTGTCTTAAATGTCTGTGCTTTCACAT
TATATGCATCCCAGATCTTCCTCTCTTTCATGTCAGAAATTGCACCACTG
TTTCCATCTATGCCGATCCATGCATTTTCACCATGAACGTGTTTTCCTTG
CAAGGCATTCATGGTCCTAATTACATTAACCCCACAATTCTGAGCCAAAG
TTCTTGGTATAGCCTCAAAAGCGATAGCAGCAGCTTCATAAGGCCACTTT
TCGATGCCTTCGATTGAGGAACTCTTTTGTTTTAGAGTGGCAGATACTGT
TAATTCTGTAGCCCCTCCACCAGGTACTAGTTTAGGATTCTTGATTATGT
TTCTTGCCACAGACATTGCATCCTGCAAATTTCTTTCCACTTCATTCGAG
AGATCCTTACTAGCACCTCT
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