CF833008

Overview
NameCF833008
Unique NameCF833008
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833008 vs. ExPASy Swiss-Prot
Match: THSB_THEK8 (Thermosome subunit beta OS=Thermococcus sp. (strain KS-8) GN=thsB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.319e-19
Identity = 59/163 (36.20%), Postives = 97/163 (59.51%), Query Frame = -1
Query:  238 RGASKDLSNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMNALQGKHVHGENAWIGIDGNSGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV--SGIKKKQAPGSGQT 720
            RG ++ + +EVER L+DA+ V ++I+++ K+V  GGA E+ ++ ++ + +  + G E+   EA A A + IPRTLA N G++ I T+  +   H   +   IG+D   G  +DM ER +     V  Q  K+A +AA M+LRIDD++  S ++K +  G G T
Sbjct:  377 RGGTEHVVDEVERALEDAVKVVKDIVEDGKIVAAGGAPEIELAISVDEYAKEVGGKEQLAIEAFAEALKVIPRTLAGNAGLDPIETLVKVIAAHKE-KGPTIGVDVFEGEPADMLERGVIAPVRVPKQAIKSA-KAAIMILRIDDVIAASKLEKDKEGGKGGT 537          
BLAST of CF833008 vs. ExPASy Swiss-Prot
Match: THS3_HALVO (Thermosome subunit 3 OS=Halobacterium volcanii GN=cct3 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.319e-19
Identity = 54/148 (36.49%), Postives = 89/148 (60.14%), Query Frame = -1
Query:  277 RGASKDLSNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMNALQGKHVHGENAWIGIDGNSGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 720
            RG ++ +  E+ER ++DA+ V    I    +VPG GATE+ ++  ++ +++ IEG ++   EA A A EA+PRTLA+N G++ I  +  L+ ++     A I   G SG I D  E  + D   VK +  ++A EAA M++RIDD+++
Sbjct:  375 RGGTEHVVYELERAIEDAVDVVVAAIDKGGVVPGAGATEIAIADRIRSEAAGIEGRKQLAVEAYADAVEALPRTLAENTGMDPIDALVDLRARYETEGLAGIISSGRSGEIGDPVELGVIDPVAVKREAIESATEAATMIVRIDDVIA 522          
BLAST of CF833008 vs. ExPASy Swiss-Prot
Match: TCPE_SCHPO (T-complex protein 1 subunit epsilon OS=Schizosaccharomyces pombe GN=cct5 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.319e-19
Identity = 49/147 (33.33%), Postives = 90/147 (61.22%), Query Frame = -1
Query:  280 RGASKDLSNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMNALQGKHVHGENAWIGIDGNSGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 720
            RG++K + +E +R L DA+ V RN+I++ ++V GGGA E++ S  + +++  I GI+++   A A A + IP  LA+N G++ I  + A++ +HV    A++GID      +DM+++ + D    K Q    A +   M+L+++DI+
Sbjct:  390 RGSNKMIVDEAKRALHDALCVVRNLIRDNRVVYGGGAAEISCSLAVTKEAEKIPGIDQYSMGAFADALDTIPLALAENSGLSSIEALTAVKARHVKENKAYLGIDCLQTGSNDMRKQFVIDPLIGKKQQLLLATQLCRMVLKVNDII 536          
BLAST of CF833008 vs. ExPASy Swiss-Prot
Match: THSA_SULSO (Thermosome subunit alpha OS=Sulfolobus solfataricus GN=thsA PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.028e-19
Identity = 55/162 (33.95%), Postives = 92/162 (56.79%), Query Frame = -1
Query:  244 RGASKDLSNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMNALQGKHVHG-ENAWIGIDGNSGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSG--IKKKQAPGSG 720
            RG++    +E ER++ DA+   RNI+  P ++PGGGA EL ++  L++ + S+ G E+   EA A A E IP  LA+  G+  I ++  L+ +H  G  N  + + G    + D+    I +   VK+Q  K+A EAA  +L+IDD+++   +K ++  G G
Sbjct:  382 RGSNDMALDEAERSINDALHALRNILLEPVILPGGGAIELELAMKLREYARSVGGKEQLAIEAFADALEEIPLILAETAGLEAISSLMDLRARHAKGLSNTGVDVIGGK-IVDDVYALNIIEPIRVKSQVLKSATEAATAILKIDDLIAAAPLKSEKKGGEG 542          
BLAST of CF833008 vs. ExPASy Swiss-Prot
Match: TCPQ_MOUSE (T-complex protein 1 subunit theta OS=Mus musculus GN=Cct8 PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 3.028e-19
Identity = 51/148 (34.46%), Postives = 84/148 (56.76%), Query Frame = -1
Query:  280 RGASKDLSNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMNALQGKHVHG-ENAWIGIDGNSGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 720
            RG++ +L +++ER + D ++  + + ++ +LVPGGGATE+ ++  +     +  G+E++  +  A AFEAIPR LA+N GV     ++ L   H  G +N  + I+    A+ DM E  I D Y  K    K A  AA  +LR+D I+
Sbjct:  378 RGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYSVHQEGNKNVGLDIEAEVPAVKDMLEASILDTYLGKYWAIKLATNAAVTVLRVDQII 525          
BLAST of CF833008 vs. ExPASy Swiss-Prot
Match: THSB_SULTO (Thermosome subunit beta OS=Sulfolobus tokodaii GN=thsB PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.166e-19
Identity = 53/157 (33.76%), Postives = 88/157 (56.05%), Query Frame = -1
Query:  250 RGASKDLSNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMNALQGKHVHGENAWIGIDGNSGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPG 720
            RG  + + +E ER L+DA+    ++I++ + V GGGA EL ++  L++ +  I G E+   EA A A E +   L +N G + I  +  L+  H +  N W GI+  +G + DM +  + +   VK    K A EAA ++LRIDD+++  KK ++ G
Sbjct:  384 RGGLERVVDETERALRDALGTVADVIRDGRAVAGGGAVELEIAKRLRKYAPQIGGKEQLAIEAYASALENLVMILIENGGYDPIDLLVKLRSAHENEANKWYGINVFTGQVEDMWKLGVIEPAVVKMNAIKAATEAATLILRIDDLIAAGKKSESKG 540          
BLAST of CF833008 vs. ExPASy Swiss-Prot
Match: TCPQ_PONAB (T-complex protein 1 subunit theta OS=Pongo abelii GN=CCT8 PE=2 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 5.166e-19
Identity = 51/148 (34.46%), Postives = 84/148 (56.76%), Query Frame = -1
Query:  280 RGASKDLSNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMNALQGKHVHG-ENAWIGIDGNSGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 720
            RG++ +L +++ER + D ++  + + ++ +LVPGGGATE+ ++  +     +  G+E++  +  A AFEAIPR LA+N GV     ++ L   H  G +N  + I+    A+ DM E  I D Y  K    K A  AA  +LR+D I+
Sbjct:  378 RGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGILDTYLGKYWAIKLATNAAVTVLRVDQII 525          
BLAST of CF833008 vs. ExPASy Swiss-Prot
Match: TCPQ_MACFA (T-complex protein 1 subunit theta OS=Macaca fascicularis GN=CCT8 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.166e-19
Identity = 51/148 (34.46%), Postives = 84/148 (56.76%), Query Frame = -1
Query:  280 RGASKDLSNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMNALQGKHVHG-ENAWIGIDGNSGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 720
            RG++ +L +++ER + D ++  + + ++ +LVPGGGATE+ ++  +     +  G+E++  +  A AFEAIPR LA+N GV     ++ L   H  G +N  + I+    A+ DM E  I D Y  K    K A  AA  +LR+D I+
Sbjct:  378 RGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGILDTYLGKYWAIKLATNAAVTVLRVDQII 525          
BLAST of CF833008 vs. ExPASy Swiss-Prot
Match: TCPQ_HUMAN (T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4)

HSP 1 Score: 94.7449 bits (234), Expect = 5.166e-19
Identity = 51/148 (34.46%), Postives = 84/148 (56.76%), Query Frame = -1
Query:  280 RGASKDLSNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMNALQGKHVHG-ENAWIGIDGNSGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 720
            RG++ +L +++ER + D ++  + + ++ +LVPGGGATE+ ++  +     +  G+E++  +  A AFEAIPR LA+N GV     ++ L   H  G +N  + I+    A+ DM E  I D Y  K    K A  AA  +LR+D I+
Sbjct:  378 RGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGILDTYLGKYWAIKLATNAAVTVLRVDQII 525          
BLAST of CF833008 vs. ExPASy Swiss-Prot
Match: TCPE_MACFA (T-complex protein 1 subunit epsilon OS=Macaca fascicularis GN=CCT5 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.166e-19
Identity = 50/146 (34.25%), Postives = 85/146 (58.22%), Query Frame = -1
Query:  283 RGASKDLSNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMNALQGKHVHGENAWIGIDGNSGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDI 720
            RG +K +  E +R+L DA+ V RN+I++ ++V GGGA E++ +  + Q++     +E++   A A A E IP  L++N G+N I+TM  ++ + V   N  +GID      +DMK++ + +    K Q    A +   M+L+IDDI
Sbjct:  388 RGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDI 533          
The following BLAST results are available for this feature:
BLAST of CF833008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
THSB_THEK82.319e-1936.20Thermosome subunit beta OS=Thermococcus sp. (strai... [more]
THS3_HALVO2.319e-1936.49Thermosome subunit 3 OS=Halobacterium volcanii GN=... [more]
TCPE_SCHPO2.319e-1933.33T-complex protein 1 subunit epsilon OS=Schizosacch... [more]
THSA_SULSO3.028e-1933.95Thermosome subunit alpha OS=Sulfolobus solfataricu... [more]
TCPQ_MOUSE3.028e-1934.46T-complex protein 1 subunit theta OS=Mus musculus ... [more]
THSB_SULTO5.166e-1933.76Thermosome subunit beta OS=Sulfolobus tokodaii GN=... [more]
TCPQ_PONAB5.166e-1934.46T-complex protein 1 subunit theta OS=Pongo abelii ... [more]
TCPQ_MACFA5.166e-1934.46T-complex protein 1 subunit theta OS=Macaca fascic... [more]
TCPQ_HUMAN5.166e-1934.46T-complex protein 1 subunit theta OS=Homo sapiens ... [more]
TCPE_MACFA5.166e-1934.25T-complex protein 1 subunit epsilon OS=Macaca fasc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02M24_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833008 ID=CF833008; Name=CF833008; organism=Citrus sinensis; type=EST; length=720bp
AGTGTCCCCAATGAAATTATGAAATTGCAAAAGTACCATCCACCCTTTAA
TCAGATAAATAAAAAATATTAAAATACATAAGTTTCCTGGAAGAATAAAA
TGGACCGCCAACAGAACAAGAAGCCAGCATTTTTTCAAAAATTTAACTGC
ATAGTCAGTCAACAGTAAAGTTGTCTAGGCAGGGAGTATTTGCTCACTGT
CTGCATCTGCCTCCGTCTCAATCTGAGGCTTCAATGGAGTTTGGCCTGAC
CCAGGGGCCTGTTTCTTCTTAATGCCACTGACAATGTCATCAATCCTCAG
AAGCATGCAAGCAGCTTCAATTGCTGTCTTAAATGTCTGTGCTTTCACAT
TATATGCATCCCAGATCTTCCTCTCTTTCATGTCAGAAATTGCACCACTG
TTTCCATCTATGCCGATCCATGCATTTTCACCATGAACGTGTTTTCCTTG
CAAGGCATTCATGGTCCTAATTACATTAACCCCACAATTCTGAGCCAAAG
TTCTTGGTATAGCCTCAAAAGCGATAGCAGCAGCTTCATAAGGCCACTTT
TCGATGCCTTCGATTGAGGAACTCTTTTGTTTTAGAGTGGCAGATACTGT
TAATTCTGTAGCCCCTCCACCAGGTACTAGTTTAGGATTCTTGATTATGT
TTCTTGCCACAGACATTGCATCCTGCAAATTTCTTTCCACTTCATTCGAG
AGATCCTTACTAGCACCTCT
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