CF833065

Overview
NameCF833065
Unique NameCF833065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL12_ORYSI (Squamosa promoter-binding-like protein 12 OS=Oryza sativa subsp. indica GN=SPL12 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.006e-19
Identity = 40/74 (54.05%), Postives = 55/74 (74.32%), Query Frame = 1
Query:  553 PSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            PS   K+ + +   +Q++ C V+GC  DLS+ R+YHR+HKVCE HSK P+V++ G ++RFCQQCSRFH L EFD
Sbjct:  161 PSTVVKKMKVSQQSTQSSYCQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFD 234          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL10_ARATH (Squamosa promoter-binding-like protein 10 OS=Arabidopsis thaliana GN=SPL10 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.621e-19
Identity = 46/104 (44.23%), Postives = 65/104 (62.50%), Query Frame = 1
Query:  466 LKLGQVNSSAEDSLNKCKEPGASKMESPSPSG-SFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            LKLG+   S E       +  A  M   +PS  + K+ ++     Q   C +DGC+ DLS+ +DYHR+H+VCE HSK P+V++ G ++RFCQQCSRFH + EFD
Sbjct:  127 LKLGKRTYSEEFWGRNNNDLSAVSMNLLTPSVVARKKTKSCGQSMQVPRCQIDGCELDLSSSKDYHRKHRVCETHSKCPKVVVSGLERRFCQQCSRFHAVSEFD 230          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL6_ARATH (Squamosa promoter-binding-like protein 6 OS=Arabidopsis thaliana GN=SPL6 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.838e-19
Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 1
Query:  568 KRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            K++RA+N  SQ   C V GC  DLS+ +DYH+RH+VCE HSKT  V++ G +QRFCQQCSRFH L EFD
Sbjct:  110 KKSRASNLCSQNPLCQVYGCSKDLSSSKDYHKRHRVCEAHSKTSVVIVNGLEQRFCQQCSRFHFLSEFD 178          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL11_ARATH (Squamosa promoter-binding-like protein 11 OS=Arabidopsis thaliana GN=SPL11 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.301e-18
Identity = 50/130 (38.46%), Postives = 71/130 (54.62%), Query Frame = 1
Query:  385 EFEQEAIPNVDAVDESSSRTKGNFSVDLKLGQVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            +F Q   P    V  +S+ +     + LKLG+   S E       E  A  M+  +PS    +++          C +DGC+ DLS+ + YHR+HKVCE HSK P+V + G ++RFCQQCSRFH + EFD
Sbjct:  104 DFVQVKAPTALEVSVASAES----DLCLKLGKRTYSEEYWGRNNNEISAVSMKLLTPSVVAGKSKLCGQSMPVPRCQIDGCELDLSSAKGYHRKHKVCEKHSKCPKVSVSGLERRFCQQCSRFHAVSEFD 229          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SBP1_ANTMA (Squamosa promoter-binding protein 1 OS=Antirrhinum majus GN=SBP1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.897e-18
Identity = 50/114 (43.86%), Postives = 68/114 (59.65%), Query Frame = 1
Query:  433 SSRTKGNFSVDLKLGQVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            +S+ +G   + L   Q     ED + +     + K  + +PSG  KRA    +GS   SC V+ C ++++N + YHRRHKVCE H+K P VL  G +QRFCQQCSRFH L EFD
Sbjct:    3 TSKGEGKRVIKLPGSQEQGEEEDDIGE----DSKKTRALTPSG--KRA----SGSTQRSCQVENCAAEMTNAKPYHRRHKVCEFHAKAPVVLHSGLQQRFCQQCSRFHELSEFD 106          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL4_ORYSJ (Squamosa promoter-binding-like protein 4 OS=Oryza sativa subsp. japonica GN=SPL4 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.438e-17
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 1
Query:  571 RARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            RA     G     C V+GC  +L   +DYHR+H+VCE HSK P+V++ GQ++RFCQQCSRFH L EFD
Sbjct:   55 RAEEGGGGGGEVRCQVEGCGVELVGVKDYHRKHRVCEAHSKFPRVVVAGQERRFCQQCSRFHALSEFD 122          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL15_ORYSJ (Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. japonica GN=SPL15 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.438e-17
Identity = 41/83 (49.40%), Postives = 49/83 (59.04%), Query Frame = 1
Query:  526 GASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            G+    S    G      +   G     C VD C +DL+N +DYHRRHKVCE+H KT + L+  Q QRFCQQCSRFH L EFD
Sbjct:  159 GSPGSASGGGGGGGGGGNSGGGGGSYPMCQVDDCRADLTNAKDYHRRHKVCEIHGKTTKALVGNQMQRFCQQCSRFHPLSEFD 241          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL15_ORYSI (Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. indica GN=SPL15 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.438e-17
Identity = 41/83 (49.40%), Postives = 49/83 (59.04%), Query Frame = 1
Query:  526 GASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            G+    S    G      +   G     C VD C +DL+N +DYHRRHKVCE+H KT + L+  Q QRFCQQCSRFH L EFD
Sbjct:  159 GSPGSASGGGGGGGGGGNSGGGGGSYPMCQVDDCRADLTNAKDYHRRHKVCEIHGKTTKALVGNQMQRFCQQCSRFHPLSEFD 241          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL15_ARATH (Squamosa promoter-binding-like protein 15 OS=Arabidopsis thaliana GN=SPL15 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.878e-17
Identity = 47/106 (44.34%), Postives = 56/106 (52.83%), Query Frame = 1
Query:  475 GQVNSSAEDSLNKCKEPGASKM------ESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            GQ  S    S       G  +       E  S S S  R       S TA C V+GC  DLSN + Y+ RHKVC +HSK+ +V++ G  QRFCQQCSRFH L EFD
Sbjct:    8 GQAESGGSSSTESSSLSGGLRFGQKIYFEDGSGSRSKNRVNTVRKSSTTARCQVEGCRMDLSNVKAYYSRHKVCCIHSKSSKVIVSGLHQRFCQQCSRFHQLSEFD 113          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL12_ARATH (Squamosa promoter-binding-like protein 12 OS=Arabidopsis thaliana GN=SPL12 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.878e-17
Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = 1
Query:  595 SQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            S+   C VD C +DLS  +DYHRRHKVCE+HSK    L+ G  QRFCQQCSRFH LEEFD
Sbjct:  122 SRAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 181          
The following BLAST results are available for this feature:
BLAST of CF833065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SPL12_ORYSI2.006e-1954.05Squamosa promoter-binding-like protein 12 OS=Oryza... [more]
SPL10_ARATH2.621e-1944.23Squamosa promoter-binding-like protein 10 OS=Arabi... [more]
SPL6_ARATH5.838e-1960.87Squamosa promoter-binding-like protein 6 OS=Arabid... [more]
SPL11_ARATH1.301e-1838.46Squamosa promoter-binding-like protein 11 OS=Arabi... [more]
SBP1_ANTMA2.897e-1843.86Squamosa promoter-binding protein 1 OS=Antirrhinum... [more]
SPL4_ORYSJ1.438e-1754.41Squamosa promoter-binding-like protein 4 OS=Oryza ... [more]
SPL15_ORYSJ1.438e-1749.40Squamosa promoter-binding-like protein 15 OS=Oryza... [more]
SPL15_ORYSI1.438e-1749.40Squamosa promoter-binding-like protein 15 OS=Oryza... [more]
SPL15_ARATH1.878e-1744.34Squamosa promoter-binding-like protein 15 OS=Arabi... [more]
SPL12_ARATH1.878e-1765.00Squamosa promoter-binding-like protein 12 OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02O13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02O13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833065 ID=CF833065; Name=CF833065; organism=Citrus sinensis; type=EST; length=774bp
ACAATAAAATCATGAAGTTCAACTTATTAAAAAACTAAGTAAACTTCATA
AGAGAGCACTTCTTCTCTTTCACCAACCATCTTCTTAGCCTTTCTACATT
CAAGTTTATAGGATTTCTTCAAAAAAAAAATATATATTATTTTATTTTTA
TCTTTGAGTCTTGACTTAAGCCACTTTATTGGTTAGTGATGGAATCAATG
TCAGTGAATAAATGGCTGCAAAGAGAAACCAGTCTCCATATGCTGAACCT
GTCTTGAAAGAGAAGCATGATTGGCTTTGGCTATGTTTGAGAAGGTGTGG
AGGGAATTAATTAAAGAATAAAGTCCAACTCTTCAATTGTTGGAGTTTAT
GGACTGGAACTTGAAACCAGCTTGGGATTTTACTGAATTTGAGCAAGAAG
CTATTCCTAACGTAGATGCAGTTGATGAGTCAAGTAGCAGGACAAAAGGG
AATTTCTCAGTTGATTTGAAGCTGGGTCAGGTTAATAGTTCGGCTGAAGA
TTCGTTGAATAAGTGTAAGGAGCCTGGTGCCTCAAAAATGGAGTCTCCTT
CACCTTCAGGGTCATTCAAGAGGGCCAGAGCAGCTAACAATGGAAGCCAG
ACTGCGTCATGTCTTGTTGATGGGTGTGACTCGGACCTTAGTAATTGTAG
GGATTACCATAGGCGCCATAAGGTGTGTGAGCTCCACTCGAAGACGCCTC
AGGTTTTGATTTGTGGGCAGAAGCAACGGTTCTGTCAGCAATGCAGCAGA
TTTCATTGCCTGGAGGAGTTTGAT
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