CF833065

Overview
NameCF833065
Unique NameCF833065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL9_ARATH (Squamosa promoter-binding-like protein 9 OS=Arabidopsis thaliana GN=SPL9 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.453e-17
Identity = 51/116 (43.97%), Postives = 63/116 (54.31%), Query Frame = 1
Query:  433 SSRTKGNFSVDLKLGQVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGS--QTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            SS    +FS  L  GQ     ED        G     S S   S +R R   +G   Q   C V+GC  DL+N + Y+ RH+VC +HSKTP+V + G +QRFCQQCSRFH L EFD
Sbjct:   21 SSTESSSFSGGLMFGQ-KIYFEDG-------GGGSGSSSSGGRSNRRVRGGGSGQSGQIPRCQVEGCGMDLTNAKGYYSRHRVCGVHSKTPKVTVAGIEQRFCQQCSRFHQLPEFD 128          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL16_ARATH (Squamosa promoter-binding-like protein 16 OS=Arabidopsis thaliana GN=SPL16 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.203e-17
Identity = 54/142 (38.03%), Postives = 66/142 (46.48%), Query Frame = 1
Query:  352 DWNLKP-AWDFTEFEQEAIPNVDAVDESSSRTKGNFSVDLKLGQVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            DW +    WD   FE   +         S +      +DL L    +  E +      P + K+ S SP            G     C VD C  DLS  +DYHRRHKVCE+HSK  + L+  Q QRFCQQCSRFH L EFD
Sbjct:    8 DWQMNRWKWDGQRFEAIELQG------ESLQLSNKKGLDLNLPCGFNDVEGTPVDLTRP-SKKVRSGSPGSG------GGGGGNYPKCQVDNCKEDLSIAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFD 136          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL8_ARATH (Squamosa promoter-binding-like protein 8 OS=Arabidopsis thaliana GN=SPL8 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.464e-17
Identity = 39/74 (52.70%), Postives = 49/74 (66.22%), Query Frame = 1
Query:  565 FKRARAANNGS----QTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            ++R+R   +G      T  C  +GC++DLS+ + YHRRHKVCE HSK   V+  G  QRFCQQCSRFH L EFD
Sbjct:  169 YRRSRPGESGMANSLSTPRCQAEGCNADLSHAKHYHRRHKVCEFHSKASTVVAAGLSQRFCQQCSRFHLLSEFD 242          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL7_ORYSJ (Squamosa promoter-binding-like protein 7 OS=Oryza sativa subsp. japonica GN=SPL7 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.464e-17
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 1
Query:  568 KRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            ++ +AA        C V+GCD  L   ++YHRRHKVCE+H+K P+V++ G +QRFCQQCSRFH L EFD
Sbjct:   94 RKEKAATAVPVVPRCQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHVLAEFD 162          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL7_ORYSI (Squamosa promoter-binding-like protein 7 OS=Oryza sativa subsp. indica GN=SPL7 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.464e-17
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 1
Query:  568 KRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            ++ +AA        C V+GCD  L   ++YHRRHKVCE+H+K P+V++ G +QRFCQQCSRFH L EFD
Sbjct:   94 RKEKAATAVPVVPRCQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHVLAEFD 162          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL6_ORYSJ (Squamosa promoter-binding-like protein 6 OS=Oryza sativa subsp. japonica GN=SPL6 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.712e-16
Identity = 36/69 (52.17%), Postives = 46/69 (66.67%), Query Frame = 1
Query:  568 KRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            K+ R         +C V+GC +DL+  RDYHRRHKVCE+H+K    ++    QRFCQQCSRFH L+EFD
Sbjct:  138 KKIRVQGGSPSGPACQVEGCTADLTGVRDYHRRHKVCEMHAKATTAVVGNTVQRFCQQCSRFHPLQEFD 206          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL1_ARATH (Squamosa promoter-binding-like protein 1 OS=Arabidopsis thaliana GN=SPL1 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.712e-16
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 1
Query:  604 ASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            A C V+ C++DLS  +DYHRRHKVCE+HSK     + G  QRFCQQCSRFH L+EFD
Sbjct:  104 AVCQVENCEADLSKVKDYHRRHKVCEMHSKATSATVGGILQRFCQQCSRFHLLQEFD 160          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL1_ORYSJ (Squamosa promoter-binding-like protein 1 OS=Oryza sativa subsp. japonica GN=SPL1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.542e-16
Identity = 54/154 (35.06%), Postives = 77/154 (50.00%), Query Frame = 1
Query:  349 MDWNLKP-AWDFTEFEQEAIPNVDAVDESSSRTKGNFSVDLKLGQVN-----SSAEDSLNKCKEPGASKMESPSPSGSFKRA------RAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            ++W+L    WD   F   A P+  +  + S R  G    ++  G V+     S  +D   +C     +  +    SG   R+      R     S    C VDGC  +LS+ RDY++RHKVCE+H+K+  V I   + RFCQQCSRFH L+EFD
Sbjct:   10 LEWDLNDWRWDSNLFL--ATPSNASPSKCSRRELGRAEGEIDFGVVDKRRRVSPEDDDGEECINAATTNGDDGQISGQRGRSSEDEMPRQGTCSSSGPCCQVDGCTVNLSSARDYNKRHKVCEVHTKSGVVRIKNVEHRFCQQCSRFHFLQEFD 161          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL13_ORYSJ (Squamosa promoter-binding-like protein 13 OS=Oryza sativa subsp. japonica GN=SPL13 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.542e-16
Identity = 46/106 (43.40%), Postives = 57/106 (53.77%), Query Frame = 1
Query:  457 SVDLKLGQVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            S  +  G  +SS+  S+      GA +    +PSG          G     C V+ C  DLS    Y+RRHKVC+ HSK P VL+ G +QRFCQQCSRFH L EFD
Sbjct:   69 SAAVAAGASSSSSSSSVAAAARRGAGRAGGGAPSG----------GGGGPRCQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFD 164          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL5_ORYSJ (Squamosa promoter-binding-like protein 5 OS=Oryza sativa subsp. japonica GN=SPL5 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.626e-16
Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 1
Query:  580 AANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            AA +  Q   C  +GC +DLS  + YHRRHKVC+ H+K   VL  G++QRFCQQCSRFH L EFD
Sbjct:  197 AAAHHHQPPRCQAEGCKADLSAAKHYHRRHKVCDFHAKAAAVLAAGKQQRFCQQCSRFHVLAEFD 261          
The following BLAST results are available for this feature:
BLAST of CF833065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SPL9_ARATH2.453e-1743.97Squamosa promoter-binding-like protein 9 OS=Arabid... [more]
SPL16_ARATH3.203e-1738.03Squamosa promoter-binding-like protein 16 OS=Arabi... [more]
SPL8_ARATH5.464e-1752.70Squamosa promoter-binding-like protein 8 OS=Arabid... [more]
SPL7_ORYSJ5.464e-1753.62Squamosa promoter-binding-like protein 7 OS=Oryza ... [more]
SPL7_ORYSI5.464e-1753.62Squamosa promoter-binding-like protein 7 OS=Oryza ... [more]
SPL6_ORYSJ2.712e-1652.17Squamosa promoter-binding-like protein 6 OS=Oryza ... [more]
SPL1_ARATH2.712e-1663.16Squamosa promoter-binding-like protein 1 OS=Arabid... [more]
SPL1_ORYSJ3.542e-1635.06Squamosa promoter-binding-like protein 1 OS=Oryza ... [more]
SPL13_ORYSJ3.542e-1643.40Squamosa promoter-binding-like protein 13 OS=Oryza... [more]
SPL5_ORYSJ4.626e-1656.92Squamosa promoter-binding-like protein 5 OS=Oryza ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02O13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02O13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833065 ID=CF833065; Name=CF833065; organism=Citrus sinensis; type=EST; length=774bp
ACAATAAAATCATGAAGTTCAACTTATTAAAAAACTAAGTAAACTTCATA
AGAGAGCACTTCTTCTCTTTCACCAACCATCTTCTTAGCCTTTCTACATT
CAAGTTTATAGGATTTCTTCAAAAAAAAAATATATATTATTTTATTTTTA
TCTTTGAGTCTTGACTTAAGCCACTTTATTGGTTAGTGATGGAATCAATG
TCAGTGAATAAATGGCTGCAAAGAGAAACCAGTCTCCATATGCTGAACCT
GTCTTGAAAGAGAAGCATGATTGGCTTTGGCTATGTTTGAGAAGGTGTGG
AGGGAATTAATTAAAGAATAAAGTCCAACTCTTCAATTGTTGGAGTTTAT
GGACTGGAACTTGAAACCAGCTTGGGATTTTACTGAATTTGAGCAAGAAG
CTATTCCTAACGTAGATGCAGTTGATGAGTCAAGTAGCAGGACAAAAGGG
AATTTCTCAGTTGATTTGAAGCTGGGTCAGGTTAATAGTTCGGCTGAAGA
TTCGTTGAATAAGTGTAAGGAGCCTGGTGCCTCAAAAATGGAGTCTCCTT
CACCTTCAGGGTCATTCAAGAGGGCCAGAGCAGCTAACAATGGAAGCCAG
ACTGCGTCATGTCTTGTTGATGGGTGTGACTCGGACCTTAGTAATTGTAG
GGATTACCATAGGCGCCATAAGGTGTGTGAGCTCCACTCGAAGACGCCTC
AGGTTTTGATTTGTGGGCAGAAGCAACGGTTCTGTCAGCAATGCAGCAGA
TTTCATTGCCTGGAGGAGTTTGAT
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