CF833065

Overview
NameCF833065
Unique NameCF833065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL14_ORYSJ (Squamosa promoter-binding-like protein 14 OS=Oryza sativa subsp. japonica GN=SPL14 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.626e-16
Identity = 42/100 (42.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:  475 GQVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            G  ++SA    +  K  G  +       G    A A         C V+GC +DLS  ++Y+ RHKVC +HSK P+V++ G +QRFCQQCSRFH L EFD
Sbjct:   59 GSGSASAAPPSSSSKAAGGGRGGGGKNKGKGVAAAAPPPPPPPPRCQVEGCGADLSGIKNYYCRHKVCFMHSKAPRVVVAGLEQRFCQQCSRFHLLPEFD 158          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SBP2_ANTMA (Squamosa promoter-binding protein 2 OS=Antirrhinum majus GN=SBP2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.041e-16
Identity = 48/131 (36.64%), Postives = 68/131 (51.91%), Query Frame = 1
Query:  382 TEFEQEAIPNVDAVDESSSRTKGNFSVDLKLGQVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            ++FE+E     +  +E     K NF+        +   +  LN  +  G    E  + SG    A+          CLV+ C +DL NC+ Y++RH+VCE+H+K P V + G  QRFCQQCSRFH L EFD
Sbjct:   24 SDFEEEEEGEDEEEEEQERVVKVNFAE-------SQLKKKKLNLGEGSGGKSGEKHTASGGGVVAQPC--------CLVENCGADLRNCKKYYQRHRVCEVHAKAPVVSVEGLMQRFCQQCSRFHDLSEFD 139          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL3_ARATH (Squamosa promoter-binding-like protein 3 OS=Arabidopsis thaliana GN=SPL3 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.030e-15
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 1
Query:  595 SQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            S +  C V+ C +D+S  + YH+RHKVC+ H+K P V I G  QRFCQQCSRFH L EFD
Sbjct:   49 SSSGVCQVESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRFCQQCSRFHALSEFD 108          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL4_ARATH (Squamosa promoter-binding-like protein 4 OS=Arabidopsis thaliana GN=SPL4 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.758e-15
Identity = 35/63 (55.56%), Postives = 42/63 (66.67%), Query Frame = 1
Query:  586 NNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            N G     C VD C +D+   + YHRRHKVCE+H+K   V + G  QRFCQQCSRFH L+EFD
Sbjct:   46 NRGGSLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFD 108          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL10_ORYSJ (Squamosa promoter-binding-like protein 10 OS=Oryza sativa subsp. japonica GN=SPL10 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.998e-15
Identity = 35/59 (59.32%), Postives = 41/59 (69.49%), Query Frame = 1
Query:  598 QTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            Q   C  +GC +DLS  + YHRRHKVCE H+K   V   G++QRFCQQCSRFH L EFD
Sbjct:  177 QPPRCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEFD 235          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL10_ORYSI (Squamosa promoter-binding-like protein 10 OS=Oryza sativa subsp. indica GN=SPL10 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.998e-15
Identity = 35/59 (59.32%), Postives = 41/59 (69.49%), Query Frame = 1
Query:  598 QTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            Q   C  +GC +DLS  + YHRRHKVCE H+K   V   G++QRFCQQCSRFH L EFD
Sbjct:  177 QPPRCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEFD 235          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL8_ORYSJ (Squamosa promoter-binding-like protein 8 OS=Oryza sativa subsp. japonica GN=SPL8 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.114e-15
Identity = 37/62 (59.68%), Postives = 43/62 (69.35%), Query Frame = 1
Query:  592 GSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLIC-GQKQRFCQQCSRFHCLEEFD 774
            G     C  +GC +DLS+ + YHRRHKVCE HSK P V+   G  QRFCQQCSRFH L+EFD
Sbjct:  179 GHHPPRCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVTAGGLHQRFCQQCSRFHLLDEFD 240          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL8_ORYSI (Squamosa promoter-binding-like protein 8 OS=Oryza sativa subsp. indica GN=SPL8 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.114e-15
Identity = 37/62 (59.68%), Postives = 43/62 (69.35%), Query Frame = 1
Query:  592 GSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLIC-GQKQRFCQQCSRFHCLEEFD 774
            G     C  +GC +DLS+ + YHRRHKVCE HSK P V+   G  QRFCQQCSRFH L+EFD
Sbjct:  179 GHHPPRCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVTAGGLHQRFCQQCSRFHLLDEFD 240          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: LG1_MAIZE (Protein LIGULELESS 1 OS=Zea mays GN=LG1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.114e-15
Identity = 37/62 (59.68%), Postives = 43/62 (69.35%), Query Frame = 1
Query:  592 GSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLIC-GQKQRFCQQCSRFHCLEEFD 774
            G     C  +GC +DLS+ + YHRRHKVCE HSK P V+   G  QRFCQQCSRFH L+EFD
Sbjct:  179 GHHPPRCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVTAGGLHQRFCQQCSRFHLLDEFD 240          
BLAST of CF833065 vs. ExPASy Swiss-Prot
Match: SPL11_ORYSJ (Squamosa promoter-binding-like protein 11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.139e-14
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 1
Query:  541 ESPSPSGSFKRARAANNGSQTAS-------CLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFD 774
            +S S S S KR R+A      A+       C V+GC  +L   ++Y+R+H+VCE H+K  +V++ GQ +RFCQQCSRFH   EFD
Sbjct:   37 DSSSASASAKRGRSAAAAGDAAAVAAEAPRCQVEGCGLELGGYKEYYRKHRVCEPHTKCLRVVVAGQDRRFCQQCSRFHAPSEFD 121          
The following BLAST results are available for this feature:
BLAST of CF833065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SPL14_ORYSJ4.626e-1642.00Squamosa promoter-binding-like protein 14 OS=Oryza... [more]
SBP2_ANTMA6.041e-1636.64Squamosa promoter-binding protein 2 OS=Antirrhinum... [more]
SPL3_ARATH1.030e-1556.67Squamosa promoter-binding-like protein 3 OS=Arabid... [more]
SPL4_ARATH1.758e-1555.56Squamosa promoter-binding-like protein 4 OS=Arabid... [more]
SPL10_ORYSJ2.998e-1559.32Squamosa promoter-binding-like protein 10 OS=Oryza... [more]
SPL10_ORYSI2.998e-1559.32Squamosa promoter-binding-like protein 10 OS=Oryza... [more]
SPL8_ORYSJ5.114e-1559.68Squamosa promoter-binding-like protein 8 OS=Oryza ... [more]
SPL8_ORYSI5.114e-1559.68Squamosa promoter-binding-like protein 8 OS=Oryza ... [more]
LG1_MAIZE5.114e-1559.68Protein LIGULELESS 1 OS=Zea mays GN=LG1 PE=2 SV=1[more]
SPL11_ORYSJ1.139e-1444.71Squamosa promoter-binding-like protein 11 OS=Oryza... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02O13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02O13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833065 ID=CF833065; Name=CF833065; organism=Citrus sinensis; type=EST; length=774bp
ACAATAAAATCATGAAGTTCAACTTATTAAAAAACTAAGTAAACTTCATA
AGAGAGCACTTCTTCTCTTTCACCAACCATCTTCTTAGCCTTTCTACATT
CAAGTTTATAGGATTTCTTCAAAAAAAAAATATATATTATTTTATTTTTA
TCTTTGAGTCTTGACTTAAGCCACTTTATTGGTTAGTGATGGAATCAATG
TCAGTGAATAAATGGCTGCAAAGAGAAACCAGTCTCCATATGCTGAACCT
GTCTTGAAAGAGAAGCATGATTGGCTTTGGCTATGTTTGAGAAGGTGTGG
AGGGAATTAATTAAAGAATAAAGTCCAACTCTTCAATTGTTGGAGTTTAT
GGACTGGAACTTGAAACCAGCTTGGGATTTTACTGAATTTGAGCAAGAAG
CTATTCCTAACGTAGATGCAGTTGATGAGTCAAGTAGCAGGACAAAAGGG
AATTTCTCAGTTGATTTGAAGCTGGGTCAGGTTAATAGTTCGGCTGAAGA
TTCGTTGAATAAGTGTAAGGAGCCTGGTGCCTCAAAAATGGAGTCTCCTT
CACCTTCAGGGTCATTCAAGAGGGCCAGAGCAGCTAACAATGGAAGCCAG
ACTGCGTCATGTCTTGTTGATGGGTGTGACTCGGACCTTAGTAATTGTAG
GGATTACCATAGGCGCCATAAGGTGTGTGAGCTCCACTCGAAGACGCCTC
AGGTTTTGATTTGTGGGCAGAAGCAACGGTTCTGTCAGCAATGCAGCAGA
TTTCATTGCCTGGAGGAGTTTGAT
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