CF833069

Overview
NameCF833069
Unique NameCF833069
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833069 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.041e-22
Identity = 54/109 (49.54%), Postives = 73/109 (66.97%), Query Frame = 2
Query:   47 VLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 373
            V++C++ +A       +TC  V ++L+PC++Y+   G +   CC GV+ L N+AR+T DRQ  CTCLK A   IS     LG AAGLP  CG+NIPY+ISPSTDCS+VQ
Sbjct:   11 VVLCMVVAA--PCAEAITCGQVTSNLAPCLAYLRNTGPLG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAIS--GINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of CF833069 vs. ExPASy Swiss-Prot
Match: NLTP4_ORYSJ (Non-specific lipid-transfer protein 4 OS=Oryza sativa subsp. japonica GN=Os12g0114500 PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.359e-22
Identity = 58/111 (52.25%), Postives = 72/111 (64.86%), Query Frame = 2
Query:   41 ILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYG-GAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 370
            ++V+  L+ +   S    VTC  VV+ L+PCI Y +    A T  CC+GVRTL +AA +TADRQT C CLKQ  S +   R    L AG+P KCG+NIPY ISPSTDCSRV
Sbjct:   13 VMVVALLLAAPAASA---VTCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPD--LVAGIPSKCGVNIPYAISPSTDCSRV 118          
BLAST of CF833069 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.028e-22
Identity = 54/118 (45.76%), Postives = 76/118 (64.41%), Query Frame = 2
Query:   20 MKLVTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYV-SYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 370
            + +V   ++ LV L   A  +++A ++C  V + ++PCISY    G   +  CC+GVR+L NAAR+TADR+  C CLK A +G+S      G AA +P KCG++IPY IS STDCSRV
Sbjct:    7 LAVVATAVVALVLL---AAATSEAAISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVS--GLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
BLAST of CF833069 vs. ExPASy Swiss-Prot
Match: NLTP5_VITSX (Non-specific lipid-transfer protein P5 OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.811e-22
Identity = 48/92 (52.17%), Postives = 63/92 (68.48%), Query Frame = 2
Query:   95 VTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 370
            ++C  V   L+PCI+Y+   G +   CCNGV+ L N+A +T DR+T C CL  A   IS   +  GLAAGLPGKCG+NIPY+ISPST+C +V
Sbjct:    1 LSCGDVATQLAPCINYLRSAGPLPVACCNGVKNLKNSAATTQDRRTACKCLINASKSISGVNF--GLAAGLPGKCGVNIPYKISPSTNCDQV 90          
BLAST of CF833069 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 8.811e-22
Identity = 50/96 (52.08%), Postives = 66/96 (68.75%), Query Frame = 2
Query:   95 VTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQ---AVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 373
            +TC  V + L+PCI YV  GGAV   CCNG+R + N AR+T DR+T C CLKQ   ++SG++        AA LPGKCG+NIPY+IS ST+C+ V+
Sbjct:    1 ITCGQVSSSLAPCIGYVRGGGAVPPACCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNN-----AAALPGKCGVNIPYKISASTNCATVK 91          
BLAST of CF833069 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.151e-21
Identity = 50/118 (42.37%), Postives = 75/118 (63.56%), Query Frame = 2
Query:   20 MKLVTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 373
            MKL   C+++++C++ +     +  ++C  V  DLSPC++Y++ G   +  CC GV+ L  AA +T DRQ  C C+K A S I  T+     AA LPGKCG+NIPY+IS ST+C+ V+
Sbjct:    5 MKLA--CVVLVMCMIVAPMA--EGAISCGAVTGDLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCMKSAASSI--TKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116          
BLAST of CF833069 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.151e-21
Identity = 49/112 (43.75%), Postives = 74/112 (66.07%), Query Frame = 2
Query:   38 CILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 373
            C+++++C++  A ++  A ++C  V +DLSPC++Y++ G   +  CC GV+ L  AA +T DRQ  C CLK A   I  T+     AA LPGKCG+NIPY+IS ST+C+ V+
Sbjct:    1 CVVLVMCMVVIAPMAEGA-ISCGAVTSDLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSI--TKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109          
BLAST of CF833069 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.151e-21
Identity = 51/118 (43.22%), Postives = 77/118 (65.25%), Query Frame = 2
Query:   20 MKLVTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 373
            MKL   C+++++C++  A ++  A ++C  V +DLSPC++Y++ G   +  CC GV+ L  AA +T DRQ  C CLK A   I  T+     AA LPGKCG+NIPY+IS +T+C+ V+
Sbjct:    5 MKLA--CVVLVICMVVIAPMAEGA-ISCGAVTSDLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSI--TKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 117          
BLAST of CF833069 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.503e-21
Identity = 48/112 (42.86%), Postives = 72/112 (64.29%), Query Frame = 2
Query:   38 CILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 373
            C+++ VC++ S      A ++C TV   L+PC +Y+S GG V  +CC GV+TL + A++T DRQ  C C++     IS       LA+GLPGKCG++IPY IS ST+C+ ++
Sbjct:   10 CLVLTVCIVASV----DAAISCGTVAGSLAPCATYLSKGGLVPPSCCAGVKTLNSMAKTTPDRQQACRCIQSTAKSIS--GLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115          
BLAST of CF833069 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.963e-21
Identity = 49/108 (45.37%), Postives = 70/108 (64.81%), Query Frame = 2
Query:   56 CLMGSAFV--STKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 373
            C + + F+  S  A +TC TV + LSPC+ Y+S GG V   CC GV+ L   A++T DRQ  C CL+ A  G++ +     LA+GLPGKCG++IPY IS ST+C+ ++
Sbjct:   10 CFVLTVFIVASVDAAITCGTVASSLSPCLGYLSKGGVVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSAAKGVNPS-----LASGLPGKCGVSIPYPISTSTNCATIK 112          
The following BLAST results are available for this feature:
BLAST of CF833069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
NLTP1_TOBAC1.041e-2249.54Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP4_ORYSJ1.359e-2252.25Non-specific lipid-transfer protein 4 OS=Oryza sat... [more]
NLTP_MAIZE3.028e-2245.76Non-specific lipid-transfer protein OS=Zea mays PE... [more]
NLTP5_VITSX8.811e-2252.17Non-specific lipid-transfer protein P5 OS=Vitis sp... [more]
NLTP1_PRUAR8.811e-2252.08Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP5_LENCU1.151e-2142.37Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTP4_LENCU1.151e-2143.75Non-specific lipid-transfer protein 4 (Fragment) O... [more]
NLTP2_LENCU1.151e-2143.22Non-specific lipid-transfer protein 2 OS=Lens culi... [more]
NLTP3_ARATH1.503e-2142.86Non-specific lipid-transfer protein 3 OS=Arabidops... [more]
NLTP4_ARATH1.963e-2145.37Non-specific lipid-transfer protein 4 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02O15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02O15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833069 ID=CF833069; Name=CF833069; organism=Citrus sinensis; type=EST; length=634bp
GGCTAGCTCCCCATTGCTGATGAAACTTGTGACAGGCTGCATCTTGGTGC
TTGTTTGCTTGATGGGCAGTGCGTTCGTGTCCACCAAAGCACAAGTAACA
TGCCGCACGGTGGTGAATGACTTGTCTCCATGCATATCCTACGTGTCATA
CGGCGGGGCCGTGACGACGAACTGTTGCAACGGAGTGAGGACACTCTACA
ATGCCGCTCGGTCCACAGCTGACCGTCAGACCGTGTGTACGTGCTTGAAA
CAAGCTGTCAGTGGAATCTCGTACACCAGGTACCAGCTCGGACTCGCAGC
TGGACTTCCCGGCAAATGTGGACTCAACATTCCTTACCAGATCAGCCCTT
CTACTGACTGCAGCAGGGTGCAGTGAGAATGATGAACTAGTAGCCATCAG
TTATGACGCTGTGTGCTTGGATAATTAAGCATGGGGTGAGAGAATAAGAG
TGCTGCGCTTCTGTTTGATGGTGTGTTAGTGTTAAATAGAAGTTGTTAGC
GTCATCTGGTGGGATTTATGTTGTCTCATGTTTTGTTAGGTTCTGTCCCA
ACCATAAGTACTAAAGAATAAGATTTTGTAAGTTACGTTTATGGAGTGAC
ATTTTGTTATTATGTGTTAAAAAAAAAAAAAAAA
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