CF833069

Overview
NameCF833069
Unique NameCF833069
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1470 contig Csv1_Contig1470:32..665. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833069 vs. ExPASy Swiss-Prot
Match: NLT43_HORVU (Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare GN=LTP4.3 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.247e-20
Identity = 50/112 (44.64%), Postives = 71/112 (63.39%), Query Frame = 2
Query:   44 LVLVCLMGSAF-VSTKAQVTCRTVVNDLSPCISYVSYGGAVT-TNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 373
            LVLV ++ +   V+T A ++C  V + LSPCISY    GA     CC+GV+ L  AA+STAD+Q  C C+K A  G++      G AAG+P  CG+++PY IS S DCS+++
Sbjct:    9 LVLVAMVAAMLLVATDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSAAGGLN-----AGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CF833069 vs. ExPASy Swiss-Prot
Match: NLT42_HORVU (Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare GN=LTP4.2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.247e-20
Identity = 50/112 (44.64%), Postives = 71/112 (63.39%), Query Frame = 2
Query:   44 LVLVCLMGSAF-VSTKAQVTCRTVVNDLSPCISYVSYGGAVT-TNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 373
            LVLV ++ +   V+T A ++C  V + LSPCISY    GA     CC+GV+ L  AA+STAD+Q  C C+K A  G++      G AAG+P  CG+++PY IS S DCS+++
Sbjct:    9 LVLVAMVAAMLIVATDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSAAGGLN-----AGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CF833069 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLCI (Non-specific lipid-transfer protein 2 OS=Solanum chilense PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.077e-19
Identity = 52/110 (47.27%), Postives = 70/110 (63.64%), Query Frame = 2
Query:   47 VLVCLMGSAFVSTKAQ-VTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 373
            VL+C++    V+  A+ +TC  V + L+PC+ Y+   G +   CC GV+ L   A++T DRQ  C CLK A S  S+T   LG AA LP  C +NIPY+ISPSTDCS+VQ
Sbjct:   11 VLLCMV---VVAPHAEALTCGQVTSTLAPCLPYLMNRGPLG-GCCGGVKGLLGQAQTTVDRQAACACLKSAAS--SFTDLDLGKAASLPSTCNVNIPYKISPSTDCSKVQ 114          
BLAST of CF833069 vs. ExPASy Swiss-Prot
Match: NLTP1_HORVU (Non-specific lipid-transfer protein 1 OS=Hordeum vulgare GN=LTP1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.077e-19
Identity = 47/104 (45.19%), Postives = 61/104 (58.65%), Query Frame = 2
Query:   59 LMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 370
            LM +A       + C  V + + PC++YV  G   +  CCNGVR L+N A+S+ DRQTVC CLK    GI      L  AA +P KC +N+PY ISP  DCSR+
Sbjct:   15 LMLTAAPRAAVALNCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIH--NLNLNNAASIPSKCNVNVPYTISPDIDCSRI 116          
BLAST of CF833069 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.837e-19
Identity = 49/118 (41.53%), Postives = 72/118 (61.02%), Query Frame = 2
Query:   20 MKLVTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 373
            MK+V  C+ +++C++ +     ++ +TC  V   L+PC+ Y+  G   +  CC GVR L +AA +T DRQ  C CLK A   IS  R     AA LPGKC +NIPY+IS ST+C+ ++
Sbjct:    4 MKVV--CVALIMCIVIAPMA--ESAITCGRVDTALAPCLGYLQGGPGPSAQCCGGVRNLNSAAVTTPDRQAACNCLKSAAGSIS--RLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
BLAST of CF833069 vs. ExPASy Swiss-Prot
Match: NLTP3_HORVU (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.837e-19
Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = 2
Query:   44 LVLVCLMGSAF-VSTKAQVTCRTVVNDLSPCISYVSYGGAVT-TNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 370
            LVLV ++ +   V+T A ++C  V + LSPCISY    GA     CC+GV+ L  AA+STAD+Q  C CLK   + I      +G  +G+PGKCG+++P+ IS STDC++V
Sbjct:    9 LVLVAMVAAMLLVATDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACRCLKSLATSIK--GINMGKVSGVPGKCGVSVPFPISMSTDCNKV 117          
BLAST of CF833069 vs. ExPASy Swiss-Prot
Match: NLTP1_LENCU (Non-specific lipid-transfer protein 1 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.837e-19
Identity = 45/119 (37.82%), Postives = 70/119 (58.82%), Query Frame = 2
Query:   17 LMKLVTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 373
            +  L   C++ L+C++  +    +A ++C TV   L PC++Y+  G   +  CC GV+ L  AAR+T DR+  C CLK +   IS    + G  A LPGKCG+ +PY IS ST+C+ ++
Sbjct:    1 MASLRVSCLVALMCMVVISAPMAEAAISCGTVSGALVPCLTYLKGGPGPSPQCCGGVKRLNGAARTTIDRRAACNCLKSSAGSIS--GLKPGNVATLPGKCGVRLPYTISTSTNCNTIR 117          
BLAST of CF833069 vs. ExPASy Swiss-Prot
Match: NLT41_HORVU (Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.837e-19
Identity = 50/112 (44.64%), Postives = 70/112 (62.50%), Query Frame = 2
Query:   44 LVLVCLMGSAF-VSTKAQVTCRTVVNDLSPCISYVSYGGAVT-TNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 373
            LVLV L+ +   V+  A ++C  V + LSPCISY    GA     CC+GV+ L  AA+STAD+Q  C C+K A  G++      G AAG+P  CG+++PY IS S DCS+++
Sbjct:    9 LVLVALVAAMLLVAADAAISCGQVSSALSPCISYARGNGAKPPAACCSGVKRLAGAAQSTADKQAACKCIKSAAGGLN-----AGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CF833069 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.134e-19
Identity = 47/93 (50.54%), Postives = 61/93 (65.59%), Query Frame = 2
Query:   95 VTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 373
            ++C  V + L+PC+ Y+   G +   CC GV+ L  AA++  DR+T CTCLK A + I       G AAGLPG CG+NIPY+ISPSTDCS VQ
Sbjct:   25 LSCGEVTSGLAPCLPYLEGRGPLG-GCCGGVKGLLGAAKTPEDRKTACTCLKSAANSIK--GIDTGKAAGLPGVCGVNIPYKISPSTDCSTVQ 114          
BLAST of CF833069 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.134e-19
Identity = 49/112 (43.75%), Postives = 67/112 (59.82%), Query Frame = 2
Query:   44 LVLVCLMGSAFVSTK---AQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 370
            LVLV L+ +  ++       +TC  V + + PC++Y   G   +  CC+GVR+L  AA +TADR+T C CLK A  GI       G AA +P KCG+++PY IS S DCSRV
Sbjct:    6 LVLVALVAALLLAAPHAAVAITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIK--GLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
The following BLAST results are available for this feature:
BLAST of CF833069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
NLT43_HORVU8.247e-2044.64Non-specific lipid-transfer protein 4.3 OS=Hordeum... [more]
NLT42_HORVU8.247e-2044.64Non-specific lipid-transfer protein 4.2 OS=Hordeum... [more]
NLTP2_SOLCI1.077e-1947.27Non-specific lipid-transfer protein 2 OS=Solanum c... [more]
NLTP1_HORVU1.077e-1945.19Non-specific lipid-transfer protein 1 OS=Hordeum v... [more]
NLTP_CICAR1.837e-1941.53Non-specific lipid-transfer protein OS=Cicer ariet... [more]
NLTP3_HORVU1.837e-1945.05Non-specific lipid-transfer protein 3 OS=Hordeum v... [more]
NLTP1_LENCU1.837e-1937.82Non-specific lipid-transfer protein 1 OS=Lens culi... [more]
NLT41_HORVU1.837e-1944.64Non-specific lipid-transfer protein 4.1 OS=Hordeum... [more]
NLTP2_SOLLC3.134e-1950.54Non-specific lipid-transfer protein 2 OS=Solanum l... [more]
NLTP1_ORYSJ3.134e-1943.75Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02O15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02O15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833069 ID=CF833069; Name=CF833069; organism=Citrus sinensis; type=EST; length=634bp
GGCTAGCTCCCCATTGCTGATGAAACTTGTGACAGGCTGCATCTTGGTGC
TTGTTTGCTTGATGGGCAGTGCGTTCGTGTCCACCAAAGCACAAGTAACA
TGCCGCACGGTGGTGAATGACTTGTCTCCATGCATATCCTACGTGTCATA
CGGCGGGGCCGTGACGACGAACTGTTGCAACGGAGTGAGGACACTCTACA
ATGCCGCTCGGTCCACAGCTGACCGTCAGACCGTGTGTACGTGCTTGAAA
CAAGCTGTCAGTGGAATCTCGTACACCAGGTACCAGCTCGGACTCGCAGC
TGGACTTCCCGGCAAATGTGGACTCAACATTCCTTACCAGATCAGCCCTT
CTACTGACTGCAGCAGGGTGCAGTGAGAATGATGAACTAGTAGCCATCAG
TTATGACGCTGTGTGCTTGGATAATTAAGCATGGGGTGAGAGAATAAGAG
TGCTGCGCTTCTGTTTGATGGTGTGTTAGTGTTAAATAGAAGTTGTTAGC
GTCATCTGGTGGGATTTATGTTGTCTCATGTTTTGTTAGGTTCTGTCCCA
ACCATAAGTACTAAAGAATAAGATTTTGTAAGTTACGTTTATGGAGTGAC
ATTTTGTTATTATGTGTTAAAAAAAAAAAAAAAA
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