CF833069

Overview
NameCF833069
Unique NameCF833069
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1470 contig Csv1_Contig1470:32..665. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833069 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.134e-19
Identity = 49/112 (43.75%), Postives = 67/112 (59.82%), Query Frame = 2
Query:   44 LVLVCLMGSAFVSTK---AQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 370
            LVLV L+ +  ++       +TC  V + + PC++Y   G   +  CC+GVR+L  AA +TADR+T C CLK A  GI       G AA +P KCG+++PY IS S DCSRV
Sbjct:    6 LVLVALVAALLLAAPHAAVAITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIK--GLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of CF833069 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.134e-19
Identity = 43/110 (39.09%), Postives = 71/110 (64.55%), Query Frame = 2
Query:   44 LVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 373
            L+L C++ +  +++ A ++C +V ++L+ CI YV  GG +   CC+GV+ L + A++T DRQ  C C++ A   +  +    G AAG+P  CG+NIPY+IS ST+C  V+
Sbjct:   10 LLLACMIVAGPITSNAALSCGSVNSNLAACIGYVLQGGVIPPACCSGVKNLNSIAKTTPDRQQACNCIQGAARALG-SGLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118          
BLAST of CF833069 vs. ExPASy Swiss-Prot
Match: NLTP_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris GN=IWF1' PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.093e-19
Identity = 47/111 (42.34%), Postives = 71/111 (63.96%), Query Frame = 2
Query:   38 CILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 370
            C LV+ C+M +A ++    +TC  V + L+PCI Y+      +  CC G+++L +AA S ADR+T CTCLK A + I    Y  G AA LP +CG+++PY ISP+T+C+ +
Sbjct:   11 CALVM-CMMVAAPLAEA--ITCGLVASKLAPCIGYLQGAPGPSAACCGGIKSLNSAAASPADRKTACTCLKSAATSIKGINY--GKAASLPRQCGVSVPYAISPNTNCNAI 116          
BLAST of CF833069 vs. ExPASy Swiss-Prot
Match: NLTP3_VITSX (Non-specific lipid-transfer protein P3 OS=Vitis sp. PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 5.345e-19
Identity = 44/92 (47.83%), Postives = 61/92 (66.30%), Query Frame = 2
Query:   95 VTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 370
            ++C  V   ++ CI+Y+   G +   CCNGV+ L N+A +T DR+T C CL  A   IS   +  GLAAGLP KCG++IPY+ISPST+C +V
Sbjct:    1 LSCGDVATQMASCINYLRGAGPLPAACCNGVKNLKNSATTTQDRRTACKCLISASKTISGVNF--GLAAGLPAKCGVSIPYKISPSTNCDQV 90          
BLAST of CF833069 vs. ExPASy Swiss-Prot
Match: NLTP2_ARATH (Non-specific lipid-transfer protein 2 OS=Arabidopsis thaliana GN=LTP2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.345e-19
Identity = 45/110 (40.91%), Postives = 67/110 (60.91%), Query Frame = 2
Query:   44 LVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 373
            +VL C++ +  ++  A ++C TV  +L+ CI+Y++ G  +T  CCNGV  L N A +T DRQ  C CL+ A   +         AAGLP  C +NIPY+IS ST+C+ V+
Sbjct:   10 MVLACMIVAGPITANALMSCGTVNGNLAGCIAYLTRGAPLTQGCCNGVTNLKNMASTTPDRQQACRCLQSAAKAVG-PGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118          
BLAST of CF833069 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.981e-19
Identity = 51/110 (46.36%), Postives = 70/110 (63.64%), Query Frame = 2
Query:   47 VLVCLMGSAFVSTKAQ-VTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 373
            VL+C++    V+  A+ +TC  V   L+PC+ Y+   G +   CC GV+ L  +A++TADR+T CTCLK A + I      L  AAG+P  C +NIPY+ISPSTDCS VQ
Sbjct:   11 VLLCMV---VVAPHAEALTCGQVTAGLAPCLPYLQGRGPLG-GCCGGVKNLLGSAKTTADRKTACTCLKSAANAIK--GIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CF833069 vs. ExPASy Swiss-Prot
Match: NLTPA_BRAOT (Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.118e-19
Identity = 42/110 (38.18%), Postives = 68/110 (61.82%), Query Frame = 2
Query:   44 LVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 373
            LVL C++ +  ++    +TC TV ++++PCI Y++ GG +   CC GV  L + AR+T DRQ  C CL+ A   +       G AAG+P  CG+++P+ IS +T+C+ V+
Sbjct:   10 LVLACMIVAGPITANRALTCGTVNSNVAPCIGYITQGGTLPGACCTGVSKLNSMARTTPDRQQACRCLETAARALG-PNLNAGRAAGIPKACGVSVPFPISTNTNCNNVK 118          
BLAST of CF833069 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 51/110 (46.36%), Postives = 70/110 (63.64%), Query Frame = 2
Query:   47 VLVCLMGSAFVSTKAQ-VTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 373
            VL+C++    V+  A+ +TC  V   L+PC+ Y+   G +   CC GV+ L  +A++TADR+T CTCLK A + I      L  AAG+P  C +NIPY+ISPSTDCS VQ
Sbjct:   11 VLLCMV---VVAPHAEALTCGQVTAGLAPCLPYLQGRGPLG-GCCGGVKGLLGSAKTTADRKTACTCLKSAANAIK--GIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CF833069 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.555e-18
Identity = 46/116 (39.66%), Postives = 75/116 (64.66%), Query Frame = 2
Query:   32 TGCILVLVCLMGSAFVSTKAQ--VTCRTVVNDLSPCISYV-SYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 370
            T  ++ LV ++ +A V+ +A   V+C  V + ++PC+SYV     + +++CC+GVRTL   A S+ADR+T C+CLK   S  S+    +G AA +P KCG+++ + IS S DCS++
Sbjct:    7 TMALVALVAVVAAAVVAERASAAVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMAS--SFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CF833069 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.555e-18
Identity = 46/116 (39.66%), Postives = 75/116 (64.66%), Query Frame = 2
Query:   32 TGCILVLVCLMGSAFVSTKAQ--VTCRTVVNDLSPCISYV-SYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 370
            T  ++ LV ++ +A V+ +A   V+C  V + ++PC+SYV     + +++CC+GVRTL   A S+ADR+T C+CLK   S  S+    +G AA +P KCG+++ + IS S DCS++
Sbjct:    7 TMALVALVAVVAAAVVAERASAAVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMAS--SFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
The following BLAST results are available for this feature:
BLAST of CF833069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
NLTP1_ORYSI3.134e-1943.75Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP1_ARATH3.134e-1939.09Non-specific lipid-transfer protein 1 OS=Arabidops... [more]
NLTP_BETVU4.093e-1942.34Non-specific lipid-transfer protein OS=Beta vulgar... [more]
NLTP3_VITSX5.345e-1947.83Non-specific lipid-transfer protein P3 OS=Vitis sp... [more]
NLTP2_ARATH5.345e-1940.91Non-specific lipid-transfer protein 2 OS=Arabidops... [more]
NLTP1_SOLLC6.981e-1946.36Non-specific lipid-transfer protein 1 OS=Solanum l... [more]
NLTPA_BRAOT9.118e-1938.18Non-specific lipid-transfer protein A OS=Brassica ... [more]
NLTP1_SOLPN1.191e-1846.36Non-specific lipid-transfer protein 1 OS=Solanum p... [more]
NLTP3_ORYSJ1.555e-1839.66Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP3_ORYSI1.555e-1839.66Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02O15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02O15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833069 ID=CF833069; Name=CF833069; organism=Citrus sinensis; type=EST; length=634bp
GGCTAGCTCCCCATTGCTGATGAAACTTGTGACAGGCTGCATCTTGGTGC
TTGTTTGCTTGATGGGCAGTGCGTTCGTGTCCACCAAAGCACAAGTAACA
TGCCGCACGGTGGTGAATGACTTGTCTCCATGCATATCCTACGTGTCATA
CGGCGGGGCCGTGACGACGAACTGTTGCAACGGAGTGAGGACACTCTACA
ATGCCGCTCGGTCCACAGCTGACCGTCAGACCGTGTGTACGTGCTTGAAA
CAAGCTGTCAGTGGAATCTCGTACACCAGGTACCAGCTCGGACTCGCAGC
TGGACTTCCCGGCAAATGTGGACTCAACATTCCTTACCAGATCAGCCCTT
CTACTGACTGCAGCAGGGTGCAGTGAGAATGATGAACTAGTAGCCATCAG
TTATGACGCTGTGTGCTTGGATAATTAAGCATGGGGTGAGAGAATAAGAG
TGCTGCGCTTCTGTTTGATGGTGTGTTAGTGTTAAATAGAAGTTGTTAGC
GTCATCTGGTGGGATTTATGTTGTCTCATGTTTTGTTAGGTTCTGTCCCA
ACCATAAGTACTAAAGAATAAGATTTTGTAAGTTACGTTTATGGAGTGAC
ATTTTGTTATTATGTGTTAAAAAAAAAAAAAAAA
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