CF833070

Overview
NameCF833070
Unique NameCF833070
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833070 vs. ExPASy Swiss-Prot
Match: SYFB_SULSO (Phenylalanyl-tRNA synthetase beta chain OS=Sulfolobus solfataricus GN=pheT PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.518e-11
Identity = 56/218 (25.69%), Postives = 98/218 (44.95%), Query Frame = 2
Query:   17 TKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNME-VSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASVKPLALNEFSDLMRLEIAMN------GFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGIL 649
            TK++FI+ T T     + V  T+  I S   +    +  V+V+  D        L  + ++ V   Y N  +G+ +  EE+   + RM+++            I V VP  R D+++  D++ED+A++ GYNN+   K  S        +  L  LE  M       GF EV  ++L  +++I        D     + NP + ++  VR +L+P +L
Sbjct:  216 TKDLFIDVTGTSF---EAVAQTLDIIVSNLAEAGGTIGRVKVIKTDNSFQQSSPLLIHKIQNVREEYANKILGIKISEEEICKHITRMRMNCNVENG-----IIRVTVPQYRVDIINEIDIVEDIAMSIGYNNLEPSKYISTN---YGSYDYLTLLERKMRELSIGAGFVEVFNFVLIKNEKI-------LDSKYVKILNPISEEYNAVRNSLIPILL 415          
BLAST of CF833070 vs. ExPASy Swiss-Prot
Match: SYFB_HAHCH (Phenylalanyl-tRNA synthetase beta chain OS=Hahella chejuensis (strain KCTC 2396) GN=pheT PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.518e-11
Identity = 45/151 (29.80%), Postives = 76/151 (50.33%), Query Frame = 2
Query:  215 INHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPAS---VKPLALNEFS-DLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKT 655
            ++  +GV L+   V  +L R+ L   + A     W  +   P  R D+    D++E+VA  YGYN +P  +P +   +KPL  ++ S   ++L +   G+ E +T+     K +S +     +E T  + NP  SD   +RTTL  G+L+T
Sbjct:  412 VDELLGVHLDRTRVEEMLARLGLGVHKVAKDG--WTFSA--PTHRFDISIEVDLIEEVARLYGYNKLPVTEPMAPLGIKPLPESKVSLRRLKLHLVSRGYQEAITYTFVDQKVLSLL---TPEEDTITLANPIASDMAAMRTTLWAGLLQT 555          
BLAST of CF833070 vs. ExPASy Swiss-Prot
Match: SYFB_PSEPF (Phenylalanyl-tRNA synthetase beta chain OS=Pseudomonas fluorescens (strain Pf0-1) GN=pheT PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11
Identity = 45/153 (29.41%), Postives = 77/153 (50.33%), Query Frame = 2
Query:  215 INHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPAS-----VKPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKTI 658
            I   +G+ +++ EV  LLN + L    SA G  QW + V  P  R D+    D++E++A  YGYN +P R P +      K  A ++  +L RL +A  G+ E +T+     K+              ++ NP ++D   +R++L PG++K +
Sbjct:  412 ITQMLGMEMDSAEVERLLNALGLKV--SADGAGQWRVEV--PSHRFDISLEVDLIEELARLYGYNRLPVRYPQARLAPQAKAEARSDLPELRRLLVA-RGYQEAITYSFIDPKQFELF---NPGVEPLLLANPISNDMAAMRSSLWPGLVKAL 556          
BLAST of CF833070 vs. ExPASy Swiss-Prot
Match: SYFB_BORBZ (Phenylalanyl-tRNA synthetase beta chain OS=Borrelia burgdorferi (strain ZS7) GN=pheT PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11
Identity = 58/220 (26.36%), Postives = 103/220 (46.82%), Query Frame = 2
Query:   23 NVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYA-----DGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPT-RSDVLHPCDVMEDVAIAYGYNNIPKRKP---ASVKPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKT 655
            ++F+E T  D     + L+     F +     +++ PV+ V+      D +  V P      +E ++  IN  +G +L  E +   L +M +++      N       +VPP  R+D LH  DV+EDV I  G ++     P   A  +   L EFS  +R  +   GF E++   + S K+    +N   D++   V NP T ++E +R +++P +LK+
Sbjct:  233 DLFVEVTGIDFEATLLALSIAACDFYDM---GFEILPVKTVFREPFNLDFKELVCPYYFQEEVEFNVENINRLLGSNLTLERICLSLKKMGVNSYSKDFKN------YIVPPFYRNDFLHEVDVIEDVMIGEGLSSFNPELPKAFAVGRLSPLEEFSRNVRNLMVGMGFQEMIYNYMGSKKDFIDRMN-INDQNFLKVSNPMTENYEYIRASIIPNLLKS 442          
BLAST of CF833070 vs. ExPASy Swiss-Prot
Match: SYFB_BORBU (Phenylalanyl-tRNA synthetase beta chain OS=Borrelia burgdorferi GN=pheT PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11
Identity = 58/220 (26.36%), Postives = 103/220 (46.82%), Query Frame = 2
Query:   23 NVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYA-----DGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPT-RSDVLHPCDVMEDVAIAYGYNNIPKRKP---ASVKPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKT 655
            ++F+E T  D     + L+     F +     +++ PV+ V+      D +  V P      +E ++  IN  +G +L  E +   L +M +++      N       +VPP  R+D LH  DV+EDV I  G ++     P   A  +   L EFS  +R  +   GF E++   + S K+    +N   D++   V NP T ++E +R +++P +LK+
Sbjct:  233 DLFVEVTGIDFEATLLALSIAACDFYDM---GFEILPVKTVFREPFNLDFKELVCPYYFQEEVEFNVENINRLLGSNLTLERICLSLKKMGVNSYSKDFKN------YIVPPFYRNDFLHEVDVIEDVMIGEGLSSFNPELPKAFAVGRLSPLEEFSRNVRNLMVGMGFQEMIYNYMGSKKDFIDRMN-INDQNFLKVSNPMTENYEYIRASIIPNLLKS 442          
BLAST of CF833070 vs. ExPASy Swiss-Prot
Match: SYFB_PSEPK (Phenylalanyl-tRNA synthetase beta chain OS=Pseudomonas putida (strain KT2440) GN=pheT PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.588e-11
Identity = 45/153 (29.41%), Postives = 75/153 (49.02%), Query Frame = 2
Query:  215 INHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPAS-----VKPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKTI 658
            I   +G+ ++  +V  LLN ++L   +S  G  QW ++V  P  R D+    D++E++A  YGYNN+P R P +      KP    +   L RL +A  G+ E +T+     K               ++ NP +SD   +R +L PG++K +
Sbjct:  413 ITQMLGMEMDPAQVEQLLNALELTTTKSGEG--QWTVSV--PSHRFDISLEVDLIEELARLYGYNNLPVRYPQARLAPQGKPETRGDLPTLRRLLVA-RGYQEAITYSFIDPKLFELF---SPGVEPLLLANPISSDMAAMRASLWPGLVKAL 557          
BLAST of CF833070 vs. ExPASy Swiss-Prot
Match: SYFB_BORGA (Phenylalanyl-tRNA synthetase beta chain OS=Borrelia garinii GN=pheT PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.588e-11
Identity = 60/220 (27.27%), Postives = 102/220 (46.36%), Query Frame = 2
Query:   26 VFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADG-----RSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPT-RSDVLHPCDVMEDVAIAYG----YNNIPKRKPASVKPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKT 655
            +F+E T  D     + L+ +   F +     +++ PV+ V+ D         V P      +E  +  +N  +G +L  E +   L +M        S  ++   N +VPP  R+D LH  DV+EDV I  G    Y  +PK      +  AL EFS  +R  +   GF E++   + S K+    +N   D++   V NP T ++E +R +++P +LK+
Sbjct:  234 LFVEVTGIDFEATLLALSIVACDFYDM---GFEILPVKTVFKDPFGLDFEELVCPYYFQEEVEFDVKNVNRLLGNNLTLERICLNLKKM------GVSSYSRDFKNYIVPPFYRNDFLHEVDVIEDVMIGEGLASFYPELPKAFTIG-RLSALEEFSRNVRNLMMGMGFQEMIYNYMGSRKDFIDRMN-INDQNFLKVSNPMTENYEYIRASIIPNLLKS 442          
BLAST of CF833070 vs. ExPASy Swiss-Prot
Match: SYFB_BORRA (Phenylalanyl-tRNA synthetase beta chain OS=Borrelia recurrentis (strain A1) GN=pheT PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11
Identity = 54/218 (24.77%), Postives = 103/218 (47.25%), Query Frame = 2
Query:   23 NVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYAD----GRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKT 655
            N+FIE T TDL   +  L ++  +  +     +++ PV+ V+      G+  + P     ++++++  +N  +G +  A ++   L ++ + A    S        ++ P  R+D LH  DV+E+V I  G +N     P      K   + EFS  +R  +   GF E++   L S  +    +N +  E  + V NP T  +E +R +++P +LK+
Sbjct:  233 NLFIEVTGTDL---EATLLSLSIVACDLYDMGFKILPVKTVFPRETLFGKEIICPYYFQNSLKINVDSVNKLLGSNFTANDMCLDLKKLGISAYFEESD----TFYIMPPVYRNDFLHEVDVIEEVMIGKGLDNFKSELPKDFTIGKLSPIEEFSRSVRNLMIGMGFQEMIYNYLGSKVDFIEKMNIKGSELLS-VSNPMTESYEYIRGSIIPDLLKS 442          
BLAST of CF833070 vs. ExPASy Swiss-Prot
Match: SYFB_AERPE (Phenylalanyl-tRNA synthetase beta chain OS=Aeropyrum pernix GN=pheT PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11
Identity = 68/223 (30.49%), Postives = 108/223 (48.43%), Query Frame = 2
Query:   11 PLTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVY---PDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASVKPLALNEFSDLMRLE---IAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTI 658
            P T+++FI+ T T    A++V  T+  I +   +R  +   V  V  +G   V+   P LS    ++    ++  +GV L  EE    L RM+ H    A G     +NV VPP R D+L   D++ED+AI+ GY  +  R P      +L   + + R     +   GFTEVL  +L S +    ++      S AV V NP   ++ V+R TL+  +L+T+
Sbjct:  217 PGTRDLFIDVTGTS---AELVAKTLDIIVASLAER--EGARVGRVRLEGPGAVWASTPLLSEAAAKLDPGTVSKALGVDLTPEEAALHLRRMR-HNASPAGGL----VNVRVPPFRVDILGEVDLVEDIAISIGYEALGPRWPGKFHGGSLRWETHVYRAVKDLLVGLGFTEVLQLVLTSPR----LVEAAGFSSMAVEVLNPVQQEYSVLRPTLLITLLQTL 425          
BLAST of CF833070 vs. ExPASy Swiss-Prot
Match: SYFB_HALSA (Phenylalanyl-tRNA synthetase beta chain OS=Halobacterium salinarium GN=pheT PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 61/220 (27.73%), Postives = 93/220 (42.27%), Query Frame = 2
Query:   17 TKNVFIECTATDLTKAKIVLNTMVTIFSEYCK-RKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASVKPLALNEFSDL---MRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDEST------AVVGNPRTSDFEVVRTTLMPGI 646
            ++ +F+E T TD    +  ++ M  I       R   +E V V Y D R    PD +     VS   I   +GV    E V  L  R  L A  +  G      +V +PP R DV HP DV++D+  AY +N++  R P         E S L   +R  +   GF ++L + + S  E    +    D         A +  P + DF ++RT  +P +
Sbjct:  234 SRELFVELTGTD----QWTIDRMCAIICYALDARGATIEDVTVDYPD-RELHRPDFAVRTKHVSHDRIETLLGVEFTTEAVVDLAERAGLDATPTDDG-----YDVEIPPYRVDVRHPVDVVDDLGRAYDFNDLTPRYPDVNTIGGRTESSRLERSVRQALVGLGFEDLLNFNMTSEAENFDRMRLTPDHDAVGAAQPATIAEPYSQDFTILRTWALPSL 443          
The following BLAST results are available for this feature:
BLAST of CF833070 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
SYFB_SULSO1.518e-1125.69Phenylalanyl-tRNA synthetase beta chain OS=Sulfolo... [more]
SYFB_HAHCH1.518e-1129.80Phenylalanyl-tRNA synthetase beta chain OS=Hahella... [more]
SYFB_PSEPF1.982e-1129.41Phenylalanyl-tRNA synthetase beta chain OS=Pseudom... [more]
SYFB_BORBZ1.982e-1126.36Phenylalanyl-tRNA synthetase beta chain OS=Borreli... [more]
SYFB_BORBU1.982e-1126.36Phenylalanyl-tRNA synthetase beta chain OS=Borreli... [more]
SYFB_PSEPK2.588e-1129.41Phenylalanyl-tRNA synthetase beta chain OS=Pseudom... [more]
SYFB_BORGA2.588e-1127.27Phenylalanyl-tRNA synthetase beta chain OS=Borreli... [more]
SYFB_BORRA3.381e-1124.77Phenylalanyl-tRNA synthetase beta chain OS=Borreli... [more]
SYFB_AERPE3.381e-1130.49Phenylalanyl-tRNA synthetase beta chain OS=Aeropyr... [more]
SYFB_HALSA4.415e-1127.73Phenylalanyl-tRNA synthetase beta chain OS=Halobac... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02O16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02O16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833070 ID=CF833070; Name=CF833070; organism=Citrus sinensis; type=EST; length=661bp
CTGCAATCACCCCTTAACAAAGAACGTGTTCATTGAATGTACTGCCACTG
ATCTGACAAAGGCCAAGATTGTTTTAAACACAATGGTAACAATTTTTTCT
GAGTATTGCAAGAGAAAATACCAAGTGGAACCAGTTGAAGTGGTCTATGC
TGATGGGAGGTCATATGTTTATCCTGATCTGTCAGCCTACAATATGGAAG
TTTCTTTGTCATATATTAATCATACAATTGGAGTCTCTTTGGAGGCAGAA
GAGGTTACTAGTTTATTGAACAGAATGCAATTGCATGCAGAGCGATCTGC
ATCAGGTAATAATCAATGGAATATAAATGTACTTGTTCCTCCAACGAGAA
GTGATGTTCTGCACCCATGTGATGTTATGGAGGATGTTGCAATTGCTTAT
GGGTACAACAACATTCCTAAGAGAAAGCCTGCATCTGTGAAACCATTGGC
CTTAAACGAGTTTAGTGACCTTATGAGGTTGGAGATTGCAATGAATGGAT
TCACGGAGGTCTTGACATGGATTTTATGCTCTAGCAAAGAGATTTCAACC
ATGCTTAATCGTCAAACTGACGAATCAACTGCTGTCGTTGGAAATCCTCG
TACATCTGATTTTGAGGTTGTTAGAACGACCTTGATGCCTGGTATATTGA
AAACCATTGGA
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