CF833084

Overview
NameCF833084
Unique NameCF833084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1972 contig Csv1_Contig1972:55..760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: QKI_FELCA (Protein quaking OS=Felis catus GN=QKI PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 39/71 (54.93%), Postives = 56/71 (78.87%), Query Frame = 1
Query:  493 PVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 705
            P+V+   +L VPV +YP+FNFVGRILGPRG + K++EA T C++ +RG+GS++D  KEE+ + KP +EHLN
Sbjct:   78 PIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLN 148          
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: QKI_CHICK (Protein quaking OS=Gallus gallus GN=QKI PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 39/71 (54.93%), Postives = 56/71 (78.87%), Query Frame = 1
Query:  493 PVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 705
            P+V+   +L VPV +YP+FNFVGRILGPRG + K++EA T C++ +RG+GS++D  KEE+ + KP +EHLN
Sbjct:   78 PIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLN 148          
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: QKI_CANFA (Protein quaking OS=Canis familiaris GN=QKI PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 39/71 (54.93%), Postives = 56/71 (78.87%), Query Frame = 1
Query:  493 PVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 705
            P+V+   +L VPV +YP+FNFVGRILGPRG + K++EA T C++ +RG+GS++D  KEE+ + KP +EHLN
Sbjct:   78 PIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLN 148          
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: QKI_BOVIN (Protein quaking OS=Bos taurus GN=QKI PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 39/71 (54.93%), Postives = 56/71 (78.87%), Query Frame = 1
Query:  493 PVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 705
            P+V+   +L VPV +YP+FNFVGRILGPRG + K++EA T C++ +RG+GS++D  KEE+ + KP +EHLN
Sbjct:   78 PIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLN 148          
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: QKIB_XENLA (Protein quaking-B OS=Xenopus laevis GN=qki-B PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 39/71 (54.93%), Postives = 56/71 (78.87%), Query Frame = 1
Query:  493 PVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 705
            P+V+   +L VPV +YP+FNFVGRILGPRG + K++EA T C++ +RG+GS++D  KEE+ + KP +EHLN
Sbjct:   79 PIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLN 149          
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: QKIA_XENLA (Protein quaking-A OS=Xenopus laevis GN=qki-A PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 39/71 (54.93%), Postives = 56/71 (78.87%), Query Frame = 1
Query:  493 PVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 705
            P+V+   +L VPV +YP+FNFVGRILGPRG + K++EA T C++ +RG+GS++D  KEE+ + KP +EHLN
Sbjct:   79 PIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLN 149          
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: QKIA_DANRE (Protein quaking-A OS=Danio rerio GN=qkia PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16
Identity = 39/74 (52.70%), Postives = 55/74 (74.32%), Query Frame = 1
Query:  484 PTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 705
            P  P+V    +L VPV +YP++NFVGRILGPRG + K++EA T C++ +RGR S++D  KEE+ + KP +EHLN
Sbjct:   75 PVGPIVHLQEKLFVPVKEYPDYNFVGRILGPRGLTAKQLEAETGCKIMVRGRSSMRDKKKEEQNRGKPNWEHLN 148          
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: QKIB_DANRE (Protein quaking-B OS=Danio rerio GN=qkib PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 38/71 (53.52%), Postives = 55/71 (77.46%), Query Frame = 1
Query:  493 PVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 705
            P+ +   +L VPV +YP+FNFVGRILGPRG + K++EA T C++ +RG+GS++D  KEE+ + KP +EHLN
Sbjct:   78 PIAQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLN 148          
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: HOW_DROME (Protein held out wings OS=Drosophila melanogaster GN=how PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 60/194 (30.93%), Postives = 88/194 (45.36%), Query Frame = 1
Query:  124 PPSGVHASPHRSSSLPLDRERYLAELLAERQKLGPFVQVLPLCSRLLSQEIRRITGYNPSFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLN 705
            P +  H +P +          YLA+LL +R++L  F  V     RLL +EI R+                    SL Q NG                    +  P   P           P   VV    ++ VPV ++P+FNFVGRILGPRG + K++E  T C++ +RG+GS++D  KE+  + KP +EHL+
Sbjct:   57 PMTPQHLTPQQQQQSTQSIADYLAQLLKDRKQLAAFPNVFTHVERLLDEEIARVRA------------------SLFQING-------------------VKKEPLTLPE----------PEGSVVTMNEKVYVPVREHPDFNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRDKKKEDANRGKPNWEHLS 203          
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: KHDR2_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Rattus norvegicus GN=Khdrbs2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 58/181 (32.04%), Postives = 86/181 (47.51%), Query Frame = 1
Query:  172 LDRERYLAELLAERQKLGP-FVQVLPLCSRLLSQEIRRITGYNPSFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLN 705
            +  E+YL EL+AE+  L P FV      SRLL++EI +  G                       +GR  D         EE  +L                   + +   +K   R+ +PV +YP FNFVG++LGPRGNSLKR++  T  ++ I G+GS++D  KEE+L+   +  Y HL+
Sbjct:    1 MGEEKYLPELMAEKDSLDPSFVHA----SRLLAEEIEKFQG----------------------SDGRKED---------EEKKYLD------------------VISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLS 128          
The following BLAST results are available for this feature:
BLAST of CF833084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
QKI_FELCA4.701e-1754.93Protein quaking OS=Felis catus GN=QKI PE=2 SV=1[more]
QKI_CHICK4.701e-1754.93Protein quaking OS=Gallus gallus GN=QKI PE=2 SV=2[more]
QKI_CANFA4.701e-1754.93Protein quaking OS=Canis familiaris GN=QKI PE=2 SV... [more]
QKI_BOVIN4.701e-1754.93Protein quaking OS=Bos taurus GN=QKI PE=2 SV=1[more]
QKIB_XENLA4.701e-1754.93Protein quaking-B OS=Xenopus laevis GN=qki-B PE=1 ... [more]
QKIA_XENLA4.701e-1754.93Protein quaking-A OS=Xenopus laevis GN=qki-A PE=1 ... [more]
QKIA_DANRE1.047e-1652.70Protein quaking-A OS=Danio rerio GN=qkia PE=2 SV=2[more]
QKIB_DANRE1.368e-1653.52Protein quaking-B OS=Danio rerio GN=qkib PE=2 SV=1[more]
HOW_DROME1.368e-1630.93Protein held out wings OS=Drosophila melanogaster ... [more]
KHDR2_RAT3.153e-1332.04KH domain-containing, RNA-binding, signal transduc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03A01_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833084 ID=CF833084; Name=CF833084; organism=Citrus sinensis; type=EST; length=706bp
CCCCCATCTCCACTCTTTAAGCCATCTCCACCTCCACCGCCTCTCTCTCC
TTCCCCTTCCGACCACCACCATCATCATAATCGAATGGGAGAGAGACTCA
CCCCTGGAAGTTACTTCCAGTACCCTCCTTCAGGAGTTCACGCTTCTCCT
CATAGGTCTTCTTCTTTGCCTTTAGATCGTGAAAGGTATTTGGCTGAATT
ATTGGCAGAAAGGCAAAAGTTAGGACCATTTGTCCAAGTTTTGCCTCTAT
GCAGCAGGCTTCTCAGTCAAGAAATCAGACGAATAACGGGTTACAATCCA
AGTTTTGTTGATCATGAAAGGTTTGAGCATGATAGCCCATTTAGGTCATT
AGGTCAGCCAAATGGAAGACCAATGGATTTGGAGGGTTTGTCTGCAATGC
AAACTGAGGAAAATGGGCATCTTCAAAGAATGGCCCCTTTTCAAACTCCT
CCTTCAATGGGCTGGCAAGGTATTCCTGGAATTCCAACCACACCTGTTGT
AAAGAGAGTTATTAGACTTGATGTTCCTGTGGATAAATATCCAAATTTTA
ATTTTGTCGGCCGGATTTTGGGACCGCGTGGGAACTCGCTCAAAAGAGTC
GAAGCCATGACAGAATGTAGGGTGTTCATTAGAGGCCGGGGTTCAGTCAA
GGATTCGATAAAGGAAGAAAAACTTAAAGATAAACCTGGATATGAGCATC
TTAATG
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