CF833084
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: KHDR2_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Homo sapiens GN=KHDRBS2 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13 Identity = 57/181 (31.49%), Postives = 87/181 (48.07%), Query Frame = 1 Query: 172 LDRERYLAELLAERQKLGP-FVQVLPLCSRLLSQEIRRITGYNPSFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLN 705 ++ E+YL EL+AE+ L P FV SRLL++EI + G +G+ D EE +L + + +K R+ +PV +YP FNFVG++LGPRGNSLKR++ T ++ I G+GS++D KEE+L+ + Y HL+ Sbjct: 1 MEEEKYLPELMAEKDSLDPSFVHA----SRLLAEEIEKFQG----------------------SDGKKED---------EEKKYLD------------------VISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLS 128
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: KHDR2_XENTR (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Xenopus tropicalis GN=khdrbs2 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13 Identity = 57/181 (31.49%), Postives = 88/181 (48.62%), Query Frame = 1 Query: 172 LDRERYLAELLAERQKLGP-FVQVLPLCSRLLSQEIRRITGYNPSFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLN 705 ++ E+YL EL+AE+ L P FV + RLL +EI + D EG +E+G + + I + +K R+ +PV +YP FNFVG++LGPRGNSLKR++ T ++ I G+GS++D IKEE+L+ D+ + HL+ Sbjct: 1 MEEEKYLPELMAEKDSLDPSFVHAM----RLLDEEIVKF-----------------------------QDSEG-----NKEDGEKKYL---------------DIISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKIKEEELRKSDEAKHAHLS 128
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: KHDR2_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Mus musculus GN=Khdrbs2 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13 Identity = 57/181 (31.49%), Postives = 86/181 (47.51%), Query Frame = 1 Query: 172 LDRERYLAELLAERQKLGP-FVQVLPLCSRLLSQEIRRITGYNPSFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLN 705 + E+YL EL+AE+ L P FV SRLL++EI + G +G+ D EE +L + + +K R+ +PV +YP FNFVG++LGPRGNSLKR++ T ++ I G+GS++D KEE+L+ + Y HL+ Sbjct: 1 MGEEKYLPELMAEKDSLDPSFVHA----SRLLAEEIEKFQG----------------------SDGKKED---------EEKKYLD------------------VISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKTKEEELRKSGEAKYAHLS 128
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: GLD1_CAEEL (Female germline-specific tumor suppressor gld-1 OS=Caenorhabditis elegans GN=gld-1 PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12 Identity = 31/73 (42.47%), Postives = 50/73 (68.49%), Query Frame = 1 Query: 484 PTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHL 702 P ++ ++ VP ++YP++NFVGRILGPRG + K++E T C++ +RG+GS++D KE + K +EHL Sbjct: 198 PAGDMISITEKIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAHRGKANWEHL 270
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: KHDR1_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Rattus norvegicus GN=Khdrbs1 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12 Identity = 32/66 (48.48%), Postives = 49/66 (74.24%), Query Frame = 1 Query: 514 RLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLN 705 R+ +PV +YP FNFVG+ILGP+GN++KR++ T ++ + G+GS++D KEE+L+ P Y HLN Sbjct: 159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLN 224
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: KHDR1_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Mus musculus GN=Khdrbs1 PE=1 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12 Identity = 32/66 (48.48%), Postives = 49/66 (74.24%), Query Frame = 1 Query: 514 RLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLN 705 R+ +PV +YP FNFVG+ILGP+GN++KR++ T ++ + G+GS++D KEE+L+ P Y HLN Sbjct: 159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLN 224
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: KHDR1_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Homo sapiens GN=KHDRBS1 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12 Identity = 32/66 (48.48%), Postives = 49/66 (74.24%), Query Frame = 1 Query: 514 RLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLN 705 R+ +PV +YP FNFVG+ILGP+GN++KR++ T ++ + G+GS++D KEE+L+ P Y HLN Sbjct: 159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLN 224
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: KHDR1_CHICK (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Gallus gallus GN=KHDRBS1 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12 Identity = 32/66 (48.48%), Postives = 49/66 (74.24%), Query Frame = 1 Query: 514 RLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLN 705 R+ +PV +YP FNFVG+ILGP+GN++KR++ T ++ + G+GS++D KEE+L+ P Y HLN Sbjct: 142 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLN 207
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: KHDR2_DANRE (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Danio rerio GN=khdrbs2 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12 Identity = 54/181 (29.83%), Postives = 90/181 (49.72%), Query Frame = 1 Query: 172 LDRERYLAELLAERQKL-GPFVQVLPLCSRLLSQEIRRITGYNPSFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLN 705 +D+++YL EL+AE++ L FV + RLL++EI E+FE D + ++G +++ I + +K R+ +PV +YP FNFVG++LGPRGNS+KR++ T ++ I G+GS++D KEE+L+ + Y HL+ Sbjct: 1 MDQDKYLPELVAEKESLDASFVHAM----RLLAEEI-------------EKFEGD----------------------ELRKDGEVKKYLD--------------IISNKNIKLSERVLIPVQQYPKFNFVGKLLGPRGNSMKRLQEETGAKMSILGKGSMRDKGKEEELRKSGEAKYAHLS 128
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: GRP33_ARTSA (Glycine-rich protein GRP33 OS=Artemia salina PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11 Identity = 35/98 (35.71%), Postives = 61/98 (62.24%), Query Frame = 1 Query: 418 HLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPG--YEHLN 705 H++ + +T P+ G + VK V R +PVD++P +NF+G++LGP G+++K+++ T ++ I GRGS++D KEE+L++ Y HLN Sbjct: 45 HIKTGSRPKTVPNTDGSGFMDLYNDTKVKLVSRCCLPVDQFPKYNFLGKLLGPGGSTMKQLQDETMTKISILGRGSMRDRNKEEELRNSGDVKYAHLN 142 The following BLAST results are available for this feature:
BLAST of CF833084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 33
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Sequences
The
following sequences are available for this feature:
EST sequence >CF833084 ID=CF833084; Name=CF833084; organism=Citrus sinensis; type=EST; length=706bpback to top |