CF833084

Overview
NameCF833084
Unique NameCF833084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: KHDR2_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Homo sapiens GN=KHDRBS2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 57/181 (31.49%), Postives = 87/181 (48.07%), Query Frame = 1
Query:  172 LDRERYLAELLAERQKLGP-FVQVLPLCSRLLSQEIRRITGYNPSFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLN 705
            ++ E+YL EL+AE+  L P FV      SRLL++EI +  G                       +G+  D         EE  +L                   + +   +K   R+ +PV +YP FNFVG++LGPRGNSLKR++  T  ++ I G+GS++D  KEE+L+   +  Y HL+
Sbjct:    1 MEEEKYLPELMAEKDSLDPSFVHA----SRLLAEEIEKFQG----------------------SDGKKED---------EEKKYLD------------------VISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLS 128          
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: KHDR2_XENTR (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Xenopus tropicalis GN=khdrbs2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 57/181 (31.49%), Postives = 88/181 (48.62%), Query Frame = 1
Query:  172 LDRERYLAELLAERQKLGP-FVQVLPLCSRLLSQEIRRITGYNPSFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLN 705
            ++ E+YL EL+AE+  L P FV  +    RLL +EI +                               D EG      +E+G  + +                I +   +K   R+ +PV +YP FNFVG++LGPRGNSLKR++  T  ++ I G+GS++D IKEE+L+  D+  + HL+
Sbjct:    1 MEEEKYLPELMAEKDSLDPSFVHAM----RLLDEEIVKF-----------------------------QDSEG-----NKEDGEKKYL---------------DIISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKIKEEELRKSDEAKHAHLS 128          
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: KHDR2_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Mus musculus GN=Khdrbs2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 57/181 (31.49%), Postives = 86/181 (47.51%), Query Frame = 1
Query:  172 LDRERYLAELLAERQKLGP-FVQVLPLCSRLLSQEIRRITGYNPSFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLN 705
            +  E+YL EL+AE+  L P FV      SRLL++EI +  G                       +G+  D         EE  +L                   + +   +K   R+ +PV +YP FNFVG++LGPRGNSLKR++  T  ++ I G+GS++D  KEE+L+   +  Y HL+
Sbjct:    1 MGEEKYLPELMAEKDSLDPSFVHA----SRLLAEEIEKFQG----------------------SDGKKED---------EEKKYLD------------------VISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKTKEEELRKSGEAKYAHLS 128          
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: GLD1_CAEEL (Female germline-specific tumor suppressor gld-1 OS=Caenorhabditis elegans GN=gld-1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 31/73 (42.47%), Postives = 50/73 (68.49%), Query Frame = 1
Query:  484 PTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHL 702
            P   ++    ++ VP ++YP++NFVGRILGPRG + K++E  T C++ +RG+GS++D  KE   + K  +EHL
Sbjct:  198 PAGDMISITEKIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAHRGKANWEHL 270          
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: KHDR1_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Rattus norvegicus GN=Khdrbs1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 32/66 (48.48%), Postives = 49/66 (74.24%), Query Frame = 1
Query:  514 RLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLN 705
            R+ +PV +YP FNFVG+ILGP+GN++KR++  T  ++ + G+GS++D  KEE+L+    P Y HLN
Sbjct:  159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLN 224          
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: KHDR1_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Mus musculus GN=Khdrbs1 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 32/66 (48.48%), Postives = 49/66 (74.24%), Query Frame = 1
Query:  514 RLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLN 705
            R+ +PV +YP FNFVG+ILGP+GN++KR++  T  ++ + G+GS++D  KEE+L+    P Y HLN
Sbjct:  159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLN 224          
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: KHDR1_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Homo sapiens GN=KHDRBS1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 32/66 (48.48%), Postives = 49/66 (74.24%), Query Frame = 1
Query:  514 RLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLN 705
            R+ +PV +YP FNFVG+ILGP+GN++KR++  T  ++ + G+GS++D  KEE+L+    P Y HLN
Sbjct:  159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLN 224          
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: KHDR1_CHICK (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Gallus gallus GN=KHDRBS1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 32/66 (48.48%), Postives = 49/66 (74.24%), Query Frame = 1
Query:  514 RLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLN 705
            R+ +PV +YP FNFVG+ILGP+GN++KR++  T  ++ + G+GS++D  KEE+L+    P Y HLN
Sbjct:  142 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLN 207          
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: KHDR2_DANRE (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Danio rerio GN=khdrbs2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 54/181 (29.83%), Postives = 90/181 (49.72%), Query Frame = 1
Query:  172 LDRERYLAELLAERQKL-GPFVQVLPLCSRLLSQEIRRITGYNPSFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLN 705
            +D+++YL EL+AE++ L   FV  +    RLL++EI             E+FE D                      +  ++G +++                 I +   +K   R+ +PV +YP FNFVG++LGPRGNS+KR++  T  ++ I G+GS++D  KEE+L+   +  Y HL+
Sbjct:    1 MDQDKYLPELVAEKESLDASFVHAM----RLLAEEI-------------EKFEGD----------------------ELRKDGEVKKYLD--------------IISNKNIKLSERVLIPVQQYPKFNFVGKLLGPRGNSMKRLQEETGAKMSILGKGSMRDKGKEEELRKSGEAKYAHLS 128          
BLAST of CF833084 vs. ExPASy Swiss-Prot
Match: GRP33_ARTSA (Glycine-rich protein GRP33 OS=Artemia salina PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 35/98 (35.71%), Postives = 61/98 (62.24%), Query Frame = 1
Query:  418 HLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPG--YEHLN 705
            H++  +  +T P+    G   +     VK V R  +PVD++P +NF+G++LGP G+++K+++  T  ++ I GRGS++D  KEE+L++     Y HLN
Sbjct:   45 HIKTGSRPKTVPNTDGSGFMDLYNDTKVKLVSRCCLPVDQFPKYNFLGKLLGPGGSTMKQLQDETMTKISILGRGSMRDRNKEEELRNSGDVKYAHLN 142          
The following BLAST results are available for this feature:
BLAST of CF833084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
KHDR2_HUMAN3.153e-1331.49KH domain-containing, RNA-binding, signal transduc... [more]
KHDR2_XENTR5.379e-1331.49KH domain-containing, RNA-binding, signal transduc... [more]
KHDR2_MOUSE7.025e-1331.49KH domain-containing, RNA-binding, signal transduc... [more]
GLD1_CAEEL2.044e-1242.47Female germline-specific tumor suppressor gld-1 OS... [more]
KHDR1_RAT2.669e-1248.48KH domain-containing, RNA-binding, signal transduc... [more]
KHDR1_MOUSE2.669e-1248.48KH domain-containing, RNA-binding, signal transduc... [more]
KHDR1_HUMAN2.669e-1248.48KH domain-containing, RNA-binding, signal transduc... [more]
KHDR1_CHICK2.669e-1248.48KH domain-containing, RNA-binding, signal transduc... [more]
KHDR2_DANRE3.486e-1229.83KH domain-containing, RNA-binding, signal transduc... [more]
GRP33_ARTSA2.951e-1135.71Glycine-rich protein GRP33 OS=Artemia salina PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03A01_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833084 ID=CF833084; Name=CF833084; organism=Citrus sinensis; type=EST; length=706bp
CCCCCATCTCCACTCTTTAAGCCATCTCCACCTCCACCGCCTCTCTCTCC
TTCCCCTTCCGACCACCACCATCATCATAATCGAATGGGAGAGAGACTCA
CCCCTGGAAGTTACTTCCAGTACCCTCCTTCAGGAGTTCACGCTTCTCCT
CATAGGTCTTCTTCTTTGCCTTTAGATCGTGAAAGGTATTTGGCTGAATT
ATTGGCAGAAAGGCAAAAGTTAGGACCATTTGTCCAAGTTTTGCCTCTAT
GCAGCAGGCTTCTCAGTCAAGAAATCAGACGAATAACGGGTTACAATCCA
AGTTTTGTTGATCATGAAAGGTTTGAGCATGATAGCCCATTTAGGTCATT
AGGTCAGCCAAATGGAAGACCAATGGATTTGGAGGGTTTGTCTGCAATGC
AAACTGAGGAAAATGGGCATCTTCAAAGAATGGCCCCTTTTCAAACTCCT
CCTTCAATGGGCTGGCAAGGTATTCCTGGAATTCCAACCACACCTGTTGT
AAAGAGAGTTATTAGACTTGATGTTCCTGTGGATAAATATCCAAATTTTA
ATTTTGTCGGCCGGATTTTGGGACCGCGTGGGAACTCGCTCAAAAGAGTC
GAAGCCATGACAGAATGTAGGGTGTTCATTAGAGGCCGGGGTTCAGTCAA
GGATTCGATAAAGGAAGAAAAACTTAAAGATAAACCTGGATATGAGCATC
TTAATG
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