CF833090

Overview
NameCF833090
Unique NameCF833090
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833090 vs. ExPASy Swiss-Prot
Match: GBRL1_XENLA (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus laevis GN=gabarapl1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.988e-29
Identity = 58/115 (50.43%), Postives = 79/115 (68.70%), Query Frame = 1
Query:   79 KSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 423
            K  +K++H               YPDR+PVIVEKA ++ +P++DK+KYLVP+DLTVGQF ++IRKRI L  E A+F FV+N +PPT A M  +YE+  +ED FLYV YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CF833090 vs. ExPASy Swiss-Prot
Match: GBRL1_RAT (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Rattus norvegicus GN=Gabarapl1 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.988e-29
Identity = 58/115 (50.43%), Postives = 79/115 (68.70%), Query Frame = 1
Query:   79 KSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 423
            K  +K++H               YPDR+PVIVEKA ++ +P++DK+KYLVP+DLTVGQF ++IRKRI L  E A+F FV+N +PPT A M  +YE+  +ED FLYV YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CF833090 vs. ExPASy Swiss-Prot
Match: GBRL1_MOUSE (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Mus musculus GN=Gabarapl1 PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 5.988e-29
Identity = 58/115 (50.43%), Postives = 79/115 (68.70%), Query Frame = 1
Query:   79 KSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 423
            K  +K++H               YPDR+PVIVEKA ++ +P++DK+KYLVP+DLTVGQF ++IRKRI L  E A+F FV+N +PPT A M  +YE+  +ED FLYV YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CF833090 vs. ExPASy Swiss-Prot
Match: GBRL1_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Homo sapiens GN=GABARAPL1 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.988e-29
Identity = 58/115 (50.43%), Postives = 79/115 (68.70%), Query Frame = 1
Query:   79 KSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 423
            K  +K++H               YPDR+PVIVEKA ++ +P++DK+KYLVP+DLTVGQF ++IRKRI L  E A+F FV+N +PPT A M  +YE+  +ED FLYV YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CF833090 vs. ExPASy Swiss-Prot
Match: GBRL1_CAVPO (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Cavia porcellus GN=GABARAPL1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.988e-29
Identity = 58/115 (50.43%), Postives = 79/115 (68.70%), Query Frame = 1
Query:   79 KSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 423
            K  +K++H               YPDR+PVIVEKA ++ +P++DK+KYLVP+DLTVGQF ++IRKRI L  E A+F FV+N +PPT A M  +YE+  +ED FLYV YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CF833090 vs. ExPASy Swiss-Prot
Match: GBRL1_BOVIN (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Bos taurus GN=GABARAPL1 PE=3 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 5.988e-29
Identity = 58/115 (50.43%), Postives = 79/115 (68.70%), Query Frame = 1
Query:   79 KSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 423
            K  +K++H               YPDR+PVIVEKA ++ +P++DK+KYLVP+DLTVGQF ++IRKRI L  E A+F FV+N +PPT A M  +YE+  +ED FLYV YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CF833090 vs. ExPASy Swiss-Prot
Match: ATG8I_ARATH (Autophagy-related protein 8i OS=Arabidopsis thaliana GN=ATG8I PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.926e-27
Identity = 55/112 (49.11%), Postives = 78/112 (69.64%), Query Frame = 1
Query:   88 FKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 423
            FK+++ L             YP RIPVI EK  ++D+P I+KKK+LVP D++VGQF+Y++  R+ LS  KA+F+FV+N LP T A+M ++YE  KD+DGF+Y+ YS E TFG
Sbjct:    4 FKEQYTLDERLAESREIIAKYPTRIPVIAEKYCKTDLPAIEKKKFLVPRDMSVGQFIYILSARLHLSPGKALFVFVNNTLPQTAALMDSVYESYKDDDGFVYMCYSSEKTFG 115          
BLAST of CF833090 vs. ExPASy Swiss-Prot
Match: ATG8D_ORYSJ (Autophagy-related protein 8D OS=Oryza sativa subsp. japonica GN=ATG8D PE=3 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 5.604e-27
Identity = 57/113 (50.44%), Postives = 77/113 (68.14%), Query Frame = 1
Query:   88 FKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDE-DGFLYVTYSGENTFG 423
            FK+E  L             YPDRIPVIVEK  RS++P ++K+KYLVP ++ VGQF++++R R+ LS   A+F+FV+N LP T  +M ++YE  KDE DGFLY+ YS E TFG
Sbjct:    6 FKEEFTLEERAKESAAMIASYPDRIPVIVEKFSRSNLPEMEKRKYLVPCNMPVGQFIFILRSRLHLSPGTALFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG 118          
BLAST of CF833090 vs. ExPASy Swiss-Prot
Match: LGG1_CAEEL (Protein lgg-1 OS=Caenorhabditis elegans GN=lgg-1 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.319e-27
Identity = 56/115 (48.70%), Postives = 79/115 (68.70%), Query Frame = 1
Query:   88 FKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHI 432
            +K+E++              YPDRIPVIVEKA +S + ++DKKKYLVP+DLTVGQF ++IRKRI+L  E A+F FV+NV+P T   M  +Y++  +ED FLY+ YS E+ +G  +
Sbjct:    5 YKEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQFYFLIRKRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYGGEV 119          
BLAST of CF833090 vs. ExPASy Swiss-Prot
Match: GBRL3_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 3 OS=Homo sapiens GN=GABARAPL3 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.319e-27
Identity = 55/115 (47.83%), Postives = 76/115 (66.09%), Query Frame = 1
Query:   79 KSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 423
            K  +K+ H               YPDR+P+IVEKA ++ +P++D++KYLVP+DLT GQF  +IRKRI L  E A+F FV+N +PPT A M  +YE+  +ED FLYV YS E+ +G
Sbjct:    2 KFQYKEVHPFEYRKKEGEKIRKKYPDRVPLIVEKAPKARVPDLDRRKYLVPSDLTDGQFYLLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDSHEEDDFLYVAYSNESVYG 116          
The following BLAST results are available for this feature:
BLAST of CF833090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
GBRL1_XENLA5.988e-2950.43Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_RAT5.988e-2950.43Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_MOUSE5.988e-2950.43Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_HUMAN5.988e-2950.43Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_CAVPO5.988e-2950.43Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_BOVIN5.988e-2950.43Gamma-aminobutyric acid receptor-associated protei... [more]
ATG8I_ARATH1.926e-2749.11Autophagy-related protein 8i OS=Arabidopsis thalia... [more]
ATG8D_ORYSJ5.604e-2750.44Autophagy-related protein 8D OS=Oryza sativa subsp... [more]
LGG1_CAEEL7.319e-2748.70Protein lgg-1 OS=Caenorhabditis elegans GN=lgg-1 P... [more]
GBRL3_HUMAN7.319e-2747.83Gamma-aminobutyric acid receptor-associated protei... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03A06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833090 ID=CF833090; Name=CF833090; organism=Citrus sinensis; type=EST; length=568bp
GCCCCTTAGTTCTCTCGCTCTTTTCTGTTTTTTTTTCCTCTCGCTTCTTC
GCTTCGACTCTTTACAGGAGGAATGGCAAAGAGTTACTTCAAGCAAGAGC
ATGATCTTGAGAAGAGACGCGCAGAGGCTGCAAGGATTAGGGAGAAGTAC
CCTGACAGGATTCCGGTGATTGTGGAGAAGGCAGAGAGAAGTGACATACC
AAATATAGATAAGAAGAAGTATCTTGTTCCAGCTGACCTGACTGTAGGAC
AATTTGTCTATGTCATCCGTAAAAGGATCAAACTGAGTGCTGAAAAGGCG
ATATTTATTTTTGTGGATAATGTGCTCCCACCTACAGGTGCAATTATGTC
TGCCATATACGAAGAGAAAAAGGATGAAGATGGTTTTCTTTATGTGACTT
ACAGTGGGGAGAACACATTTGGAAGCCACATCCCAGTTTAGCCTTGTGAT
TATCTATCTGCTCATTGTGTGGTTTCTTGTGCGACCGCATTTTTATCTCA
ATTGTCATCCTTGCTTTCCGCTGAATATTCCTTTATCGGGCATATTTTAT
ATTTTATAAAGACATTGC
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