CF833105

Overview
NameCF833105
Unique NameCF833105
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833105 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.625e-16
Identity = 57/168 (33.93%), Postives = 96/168 (57.14%), Query Frame = 2
Query:    2 EVALIFFSNRGKLYEFCSSSSMLKTLERYQK-CNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME----GYQVNTLQLNPSAEDCGYGLKPAQPQGDT 490
            EVAL+ FSNRG+LYE+ +++S+  T+ERY+K C+  +   +VS  EA     QQE  KL+A+   L    RN++GE L  +  KEL++LE++++  + +IRS + + +   +  +Q +E  L   N+ L+ ++ E     +Q   + L P +    + L P   Q DT
Sbjct:   58 EVALVVFSNRGRLYEY-ANNSVKATIERYKKACSDSSNTGSVS--EANAQYYQQEASKLRAQIGNLMNQNRNMMGEALAGMKLKELKNLEQRIEKGISKIRSKKNELLFAEIEYMQKREVDLHNNNQYLRAKIAETERAQHQHQQMNLMPGSSSNYHELVPPPQQFDT 222          
BLAST of CF833105 vs. ExPASy Swiss-Prot
Match: MAD58_ORYSJ (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.123e-16
Identity = 54/153 (35.29%), Postives = 87/153 (56.86%), Query Frame = 2
Query:    2 EVALIFFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQ-VNTLQLNPSAEDCGY 457
            EVAL+ FS+RG+LYE+ S++S+ +T+ERY+K N      +  A E      QQE  KLK +   LQ S R L+G+ +  +N +EL+ LE +LD  L +IR+ + + +   +  +Q +E  L   N  LK ++ E  + + T+ +  SA    Y
Sbjct:   84 EVALVVFSSRGRLYEY-SNNSVKETIERYKKANSDTSNASTVA-EINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITTMNHRELKQLEGRLDKGLGKIRARKNELLCAEIEYMQRRETELQNDNMYLKSKVAESERGLQTVNMMGSASTSEY 234          
BLAST of CF833105 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.123e-16
Identity = 58/168 (34.52%), Postives = 96/168 (57.14%), Query Frame = 2
Query:    2 EVALIFFSNRGKLYEFCSSSSMLKTLERYQK-CNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME----GYQVNTLQLNPSAEDCGYGLKPAQPQGDT 490
            EVALI FS+RG+LYE+ +++S+  T+ERY+K C+  +   ++S  EA     QQE  KL+A+   LQ   RN+LGE L  L+ ++L++LE++++  + +IRS + + +   +  +Q +E  L   N+ L+ ++ E      Q    Q+N       Y L P   Q DT
Sbjct:   58 EVALIVFSSRGRLYEY-ANNSVKATIERYKKACSDSSNTGSIS--EANAQYYQQEASKLRAQIGNLQNQNRNMLGESLAALSLRDLKNLEQKIEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERAQQQQQQQQMNLMPGSSSYELVPPPHQFDT 222          
BLAST of CF833105 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.123e-16
Identity = 55/162 (33.95%), Postives = 90/162 (55.56%), Query Frame = 2
Query:    2 EVALIFFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGD 487
            EVALI FS+RG+LYE+ +++S+  T+ERY+K    +     S  EA     QQE  KL+A+   LQ   RN LGE L  LN ++L +LE++++  + +IR+ + + +   +  +Q +E  L   N+ L+ ++ E  +   + L P +    Y L P Q   D
Sbjct:   58 EVALIVFSSRGRLYEY-ANNSVKATIERYKKACSDSSNTG-SIAEANAQYYQQEASKLRAQIGNLQNQNRNFLGESLAALNLRDLRNLEQKIEKGISKIRAKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERSQQMNLMPGSS--SYDLVPPQQSFD 215          
BLAST of CF833105 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.772e-16
Identity = 55/131 (41.98%), Postives = 76/131 (58.02%), Query Frame = 2
Query:    2 EVALIFFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 394
            EVALI FS RGKLYEF SSSS+ KT+ERYQK        +   R      S+ E   L  + E L+ S R ++GE L   + +EL+ LE QLD SL +IR+ + Q + +   +L+ KE+ L   NK L ++
Sbjct:   42 EVALIIFSPRGKLYEFSSSSSIPKTVERYQKRIQDLGSNH--KRNDNSQQSKDETYGLARKIEHLEISTRKMMGEGLDASSIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEK 170          
BLAST of CF833105 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.621e-16
Identity = 58/176 (32.95%), Postives = 97/176 (55.11%), Query Frame = 2
Query:    2 EVALIFFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQ---EYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDT---FFHALEC 511
            EV+LI FS +GKLYEF +SS+M  T++RY +      +  VS +   E + Q    E   +  + E L+ S+R LLGE +G  + +EL+ +E+QL+ S+K IR+ +TQ   + + +L+ KE+ L+  N+ L ++   G   + +  N + E  G G + + P  +     F  L C
Sbjct:   42 EVSLIIFSPKGKLYEF-ASSNMQDTIDRYLRHT----KDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKW--GSHESEVWSNKNQESTGRGDEESSPSSEVETQLFIGLPC 210          
BLAST of CF833105 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.176e-16
Identity = 49/135 (36.30%), Postives = 83/135 (61.48%), Query Frame = 2
Query:    2 EVALIFFSNRGKLYEFCSSSSMLKTLERYQK-CNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 403
            EVAL+ FS RG+LYE+ +++S+  T+ERY+K C+     P ++  EA     QQE  KL+ +   +Q   R++LGE LG LN KEL++LE +L+  + ++RS + + ++  +  +Q +E  L   N  L+ ++ E
Sbjct:   57 EVALVIFSTRGRLYEY-ANNSVRGTIERYKKACSDAVNPPTIT--EANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKREIELQNDNMYLRSKITE 188          
BLAST of CF833105 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.054e-15
Identity = 50/133 (37.59%), Postives = 78/133 (58.65%), Query Frame = 2
Query:    2 EVALIFFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSS-QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL 397
            EV L+ FS+ G+LYE+ SS+SM   ++RY K      E    A    EL   Q+E   L+ +   LQ + R L+GE+L  LN KEL+SLE QL++SL+ +R+ +   ++D + EL  K  L+ + N  L +++
Sbjct:   42 EVGLMIFSSTGRLYEY-SSTSMKSVIDRYGKSK---DEQQAVANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDEIHELNRKGSLVHQENMELYKKI 170          
BLAST of CF833105 vs. ExPASy Swiss-Prot
Match: AGL21_ARATH (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.003e-15
Identity = 51/140 (36.43%), Postives = 77/140 (55.00%), Query Frame = 2
Query:    2 EVALIFFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSS-QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVN 418
            EV LI FS+ GKLY+F +SSSM   ++RY K      E       A E+   Q+E   L+    ALQ + R ++GE+L  L+  EL SLE Q+++SL+ IR  + Q +   + EL  K  L+ + N  L +++   +Q N
Sbjct:   42 EVGLIIFSSTGKLYDF-ASSSMKSVIDRYNKSKI---EQQQLLNPASEVKFWQREAAVLRQELHALQENHRQMMGEQLNGLSVNELNSLENQIEISLRGIRMRKEQLLTQEIQELSQKRNLIHQENLDLSRKVQRIHQEN 177          
BLAST of CF833105 vs. ExPASy Swiss-Prot
Match: GGM13_GNEGN (MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.918e-15
Identity = 53/138 (38.41%), Postives = 76/138 (55.07%), Query Frame = 2
Query:    2 EVALIFFSNRGKLYEFCS-SSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYL---KLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 403
            E+ LI FS+ GKL+E+ S SSSM K +ERYQK         VS     E  +Q  Y    ++K   E LQ + R ++GE+L  L   EL  L +QL+ +  ++RS + Q ML  L  L+ KE++L + N  L + L E
Sbjct:   42 ELGLIIFSSSGKLFEYSSASSSMKKIIERYQK---------VSGARITEYDNQHLYCEMTRMKNENEKLQTNIRRMMGEDLTSLTMTELHHLGQQLESASSRVRSRKNQLMLQQLENLRRKERILEDQNSHLCRLLAE 170          
The following BLAST results are available for this feature:
BLAST of CF833105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
AG_SOLLC1.625e-1633.93Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]
MAD58_ORYSJ2.123e-1635.29MADS-box transcription factor 58 OS=Oryza sativa s... [more]
AG_TOBAC2.123e-1634.52Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
AG_PETHY2.123e-1633.95Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]
AGL14_ARATH2.772e-1641.98Agamous-like MADS-box protein AGL14 OS=Arabidopsis... [more]
SOC1_ARATH3.621e-1632.95MADS-box protein SOC1 OS=Arabidopsis thaliana GN=S... [more]
AGL5_ARATH6.176e-1636.30Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]
MAD27_ORYSJ1.054e-1537.59MADS-box transcription factor 27 OS=Oryza sativa s... [more]
AGL21_ARATH4.003e-1536.43Agamous-like MADS-box protein AGL21 OS=Arabidopsis... [more]
GGM13_GNEGN8.918e-1538.41MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03A13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833105 ID=CF833105; Name=CF833105; organism=Citrus sinensis; type=EST; length=675bp
TGAGGTTGCTCTCATCTTTTTCTCCAATAGAGGAAAGCTGTACGAGTTTT
GCAGCAGTTCAAGCATGCTCAAAACGCTTGAGAGGTACCAGAAGTGCAAC
TATGGAGCACCAGAACCGAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAG
TAGCCAGCAAGAATATCTGAAGCTTAAAGCACGATATGAAGCCCTACAGA
GATCCCAAAGGAATCTCCTTGGAGAAGAACTTGGCCCTCTAAACAGCAAA
GAGCTTGAGTCACTTGAAAGGCAGCTTGATATGTCATTGAAGCAGATCAG
ATCAACAAGAACTCAGTACATGCTGGATACCCTTACTGAACTGCAACATA
AGGAACAGTTGCTGAGCGAAGCAAATAAGACCCTCAAACAAAGGTTGATG
GAGGGATACCAAGTGAACACACTTCAATTGAATCCTAGTGCAGAAGATTG
TGGTTATGGGCTTAAACCAGCTCAACCTCAGGGCGATACCTTCTTTCACG
CCTTGGAATGTGAACCCACATTGCAAATTGGATACCAGCCTGCGGACCCA
ATATCGGTTGTCACAGCAGGCCCGAGTCTGAATAATTACATGCAAGGATG
GCTACCATGCTAAGAGAGCGGCGGGCATTACCAGTCAATGTATTGCAGTT
GATCCATAAGAATCAGCAACTTTGT
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