CF833106

Overview
NameCF833106
Unique NameCF833106
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833106 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.193e-22
Identity = 53/130 (40.77%), Postives = 69/130 (53.08%), Query Frame = 1
Query:  268 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRXAIPIYWNYNYGATGEALKADL 657
            F+     RN       GF+ Y +FI A   +   GFGTTG    K KE+ AFLA    +T+ G+  A  GP AWG C+  E +  + YC       +PC PG +YYGR  I +  NYNYG  G+A+K DL
Sbjct:   89 FDQMLKYRNDGRCAGHGFYTYDAFIAAARSFN--GFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSPK---DWPCAPGKKYYGRGPIQLTHNYNYGLAGQAIKEDL 213          
BLAST of CF833106 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.093e-21
Identity = 50/130 (38.46%), Postives = 69/130 (53.08%), Query Frame = 1
Query:  268 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRXAIPIYWNYNYGATGEALKADL 657
            F+     RN     A GF+ Y +F+ A   +   GFGTTG+   + +E+ AFLA    +T+ G+  A  G  AWG C+  E   + +YC  S +  +PC PG  YYGR  I +  NYNYG  G A+  DL
Sbjct:   89 FDRMLLHRNDGACQAKGFYTYDAFVAAAGAFP--GFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQ--WPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDL 214          
BLAST of CF833106 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 102.449 bits (254), Expect = 2.093e-21
Identity = 50/130 (38.46%), Postives = 69/130 (53.08%), Query Frame = 1
Query:  268 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRXAIPIYWNYNYGATGEALKADL 657
            F+     RN     A GF+ Y +F+ A   ++  GFGTTG    + +E+ AFLA    +T+ G+  A  G  AWG C+  E   + +YC  S +  +PC PG  YYGR  I +  NYNYG  G A+  DL
Sbjct:   86 FDRMLLHRNDGACQAKGFYTYDAFVAAASAFR--GFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQ--WPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDL 211          
BLAST of CF833106 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.570e-21
Identity = 53/130 (40.77%), Postives = 69/130 (53.08%), Query Frame = 1
Query:  268 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRXAIPIYWNYNYGATGEALKADL 657
            F +    RN       GF+ Y +FI A   +   GFGTTG    + +EI AFLA    +T+ G+  A  GP AWG CY  E     +YC  S +  +PC  G +YYGR  I I +NYNYG  G+A+  DL
Sbjct:   74 FNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFP--GFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGAYCVPSAQ--WPCAAGRKYYGRGPIQISYNYNYGQAGKAIGVDL 199          
BLAST of CF833106 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.570e-21
Identity = 53/139 (38.13%), Postives = 71/139 (51.08%), Query Frame = 1
Query:  241 ISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRXAIPIYWNYNYGATGEALKADL 657
            IS+      F+     RN        F+ Y +FITA   ++  GFGTTG    + +E+ AF A    +T+ G+  A  G  AWG CY  E     SYC  S +  +PC PG +YYGR  I I +NYNYG  G A+  +L
Sbjct:   85 ISNIISSSMFDQMLKHRNDNTCQGKSFYTYNAFITAARSFR--GFGTTGDTTRRKREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPSYCVQSSQ--WPCAPGQKYYGRGPIQISYNYNYGPCGRAIGQNL 219          
BLAST of CF833106 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.570e-21
Identity = 52/132 (39.39%), Postives = 71/132 (53.79%), Query Frame = 1
Query:  265 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYG-VATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRXAIPIYWNYNYGATGEALKADL 657
            +F+     RN     A GF+ Y +FI A   +    F TTG    + +E+ AFLA    +T+ G G  A  GP  WG CYN E++P+  YC   +   YPC PG +Y+GR  + + WNYNYG  G A+  DL
Sbjct:   80 RFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFP--AFATTGDDATRKREVAAFLAQTSHETTGGAGWAAPDGPYTWGYCYNRELNPAD-YCQ--WDPNYPCAPGKQYFGRGPMQLTWNYNYGQCGRAIGVDL 206          
BLAST of CF833106 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.662e-21
Identity = 48/130 (36.92%), Postives = 69/130 (53.08%), Query Frame = 1
Query:  268 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRXAIPIYWNYNYGATGEALKADL 657
            FE     RN     A GF+ Y++F+ A   +    FG TG    + +E+ AFL     +T+ G+  A  GP +WG C+  E +P   YC  S +  +PC PG +YYGR  I + +N+NYG  G A+  DL
Sbjct:   98 FERLLLHRNDGACPARGFYTYEAFLAAAAAFP--AFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPE--WPCAPGRKYYGRGPIQLSFNFNYGPAGRAIGVDL 223          
BLAST of CF833106 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.089e-21
Identity = 50/140 (35.71%), Postives = 71/140 (50.71%), Query Frame = 1
Query:  238 TISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRXAIPIYWNYNYGATGEALKADL 657
            ++S      QF+     RN     A GF+ Y +F+ A   +   GFG TG+   + +++ AFLA    +T+ G+  A  G  AWG C+  E   +  YC  S +  +PC PG  YYGR  I +  NYNYG  G A+  DL
Sbjct:   24 SVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFP--GFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQ--WPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDL 159          
BLAST of CF833106 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.953e-21
Identity = 53/155 (34.19%), Postives = 73/155 (47.10%), Query Frame = 1
Query:  205 CPTWSKFCCNETISD----YFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRXAIPIYWNYNYGATGEALKADL 657
            C     +CC   +S     +F    FE     RN       GF+ Y ++  AT  Y   GFG TG    + +E+ AF A    +TS    +    P  WG C  +E++P+  YCD   K +YPC   A+YYGR  + + WNYNYG  G  L  +L
Sbjct:   47 CGLTVAYCCAGCVSQCRNCFFTESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYP--GFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCV--ADYYGRGPLQLRWNYNYGECGNYLGQNL 197          
BLAST of CF833106 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.022e-20
Identity = 50/130 (38.46%), Postives = 66/130 (50.77%), Query Frame = 1
Query:  268 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRXAIPIYWNYNYGATGEALKADL 657
            F+     RN       GF+ Y +FI A   +   GFGT+G    + +EI AF A    +T+ G+  A  GP AWG C+  E      YC  S +  +PC PG +Y+GR  I I  NYNYG  G A+  DL
Sbjct:   84 FDQMLKHRNDNACQGKGFYSYNAFINAARSFP--GFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQ--WPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDL 209          
The following BLAST results are available for this feature:
BLAST of CF833106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
CHIX_PEA7.193e-2240.77Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHIA_SECCE2.093e-2138.46Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI1_HORVU2.093e-2138.4626 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIB_VITVI3.570e-2140.77Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI3_TOBAC3.570e-2138.13Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI1_THECC3.570e-2139.39Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI2_ORYSJ4.662e-2136.92Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIC_SECCE6.089e-2135.71Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI8_POPTR7.953e-2134.19Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI2_TOBAC3.022e-2038.46Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03A14_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833106 ID=CF833106; Name=CF833106; organism=Citrus sinensis; type=EST; length=659bp
CTCATCTTCCCCCCATTGAATCTCGAAACAACAGGTAGATCTGGTGAGAA
CGAGAAAATGAAGATGAAGAATGGCAGTGTGGCAATGACACTGACAGTGG
CACTAGTACTGGCACTGGCAGTGAGTTTGGCAAATGGAGATGAATCAGAG
AAGGTGATAGTGAAGAAGTTGAAGGGGAAAAAAGTTTGCATAAAAGGGTG
GGAGTGCCCAACATGGTCGAAATTCTGCTGTAACGAGACGATATCAGACT
ATTTCCAGGTTTACCAGTTTGAGAATTTCTTCTCGAAAAGGAACACGCCG
GTGGCACATGCCGTGGGATTCTGGGATTATCAGTCTTTCATTACTGCCAC
CGTCAAATATCAGCCCCTCGGCTTCGGTACCACCGGTACTAAGCTTGATA
AGATGAAGGAGATTTGCGCTTTTCTTGCCCACGTGGGCTGCAAGACCTCT
TGTGGATATGGAGTGGCCACTGGAGGACCATTGGCCTGGGGACTTTGCTA
CAACCATGAAATGAGCCCCAGTCAGTCATATTGTGATGATTCCTACAAAT
ACACATATCCCTGCACCCCTGGAGCTGAGTACTATGGCCGANGTGCTATA
CCTATATACTGGAACTATAACTATGGAGCCACTGGGGAAGCATTGAAGGC
AGATCTGTT
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