CF833115
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 4.540e-38 Identity = 83/181 (45.86%), Postives = 121/181 (66.85%), Query Frame = -3 Query: 271 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKE-YGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPGFKMSEMKYKD 798 I LAVALKQA+TP ++AY +QV +N+ L KGY LV+GGT+NHLV +++ G+ G++VEK+ + +I NKN V GD SA+ PGG+R+GTPA+TSRG LE+DF ++ +FF AV + ++++ E G LKDF L ++ +I L+ DVE++A F GF+ MKYK+ Sbjct: 338 ITGLAVALKQATTPEYRAYQEQVLSNSSKFAQALGEKGYELVSGGTDNHLVLVNMKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFLEEDFVKVADFFDAAVKIAVKVKAETQGTKLKDFVATLESSAPIKSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN 518
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 5.929e-38 Identity = 85/180 (47.22%), Postives = 118/180 (65.56%), Query Frame = -3 Query: 271 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKE-YGKLLKDFNKGLVNN---KDIEALKADVEKFASSFDMPGFKMSEMKYKD 798 I LAVALKQA+T +KAY +QV +N+ L GY LV+GGTENHLV +L+ G+ G+KVEK+ + +I NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++ FF AV L ++I+ E G LKDF + ++ +I L+ DVE++A F GF+ MKYK+ Sbjct: 338 ITGLAVALKQATTAEYKAYQEQVMSNSAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSKVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDLAVKLAVKIKGEAKGTKLKDFVTAMESSAIQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 7.744e-38 Identity = 84/171 (49.12%), Postives = 113/171 (66.08%), Query Frame = -3 Query: 298 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKAD----VEKFASSFDMPGF 798 I A+AVALKQA TP F+ Y+ Q+ NA A+ N L +GYSLV+GGT+NHLV DLRP GL G + E++ +L +IT NKN GD SA+ PGG+R+G PA+TSRG LE DF ++ F V + LE++ + K L+DF L+ + + AD VE+FA +F MPGF Sbjct: 332 IAAVAVALKQACTPMFREYSLQILKNAQAMANALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRGFLEDDFRKVVGFIDEGVNIGLEVKSKTTK-LQDFKSFLLKDPETSHQLADLRQRVEQFARAFPMPGF 501
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 6.556e-37 Identity = 83/180 (46.11%), Postives = 116/180 (64.44%), Query Frame = -3 Query: 271 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKE-YGKLLKDFNKGLVNN---KDIEALKADVEKFASSFDMPGFKMSEMKYKD 798 I LAVALKQA+T +KAY +QV +N L GY LV+GGTENHLV +L+ G+ G++VEK+ + +I NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++ F AV L ++I+ E G LKDF + ++ +I L+ DVE++A F GF+ MKYK+ Sbjct: 338 ITGLAVALKQATTAEYKAYQEQVMSNCAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYLFDLAVKLAVKIKGEAQGTKLKDFVAAMQSSAFQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYC_CAEBR (Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3) HSP 1 Score: 154.066 bits (388), Expect = 8.562e-37 Identity = 78/170 (45.88%), Postives = 105/170 (61.76%), Query Frame = -3 Query: 301 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPG 798 I +AVALKQ + F Y +Q+ NA L L GYSL TGGT+NHL+ DLRP+G+ G + E + DL +I NKN GD SAL PGG+R+GTPA+TSRG E+DFE++G+F H V + + E GK LKDF N +++ L VE+F+ F++PG Sbjct: 338 IAGIAVALKQCLSEDFVQYGEQILKNAKTLAERLKKHGYSLATGGTDNHLLLVDLRPIGVEGARAEHILDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFKEQDFEKVGDFIHEGVQIAKKYNAEAGKTLKDFKAFTATNEQFKQEVAELAKRVEEFSGKFEIPG 507
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2) HSP 1 Score: 153.68 bits (387), Expect = 1.118e-36 Identity = 78/170 (45.88%), Postives = 106/170 (62.35%), Query Frame = -3 Query: 301 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPG 798 I +AVAL+Q + F Y +QV NA L + GY+L TGGT+NHL+ DLRP+G+ G + E + DL +I NKN GD SAL PGG+R+GTPA+TSRG E+DFE++G+F H V + + E GK LKDF N KD+ L VE+F++ F++PG Sbjct: 334 IAGIAVALRQCLSEDFVQYGEQVLKNAKTLAERMKKHGYALATGGTDNHLLLVDLRPIGVEGARAEHVLDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFQEQDFEKVGDFIHEGVQIAKKYNAEAGKTLKDFKSFTETNEPFKKDVADLAKRVEEFSTKFEIPG 503
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3) HSP 1 Score: 152.525 bits (384), Expect = 2.491e-36 Identity = 81/171 (47.37%), Postives = 113/171 (66.08%), Query Frame = -3 Query: 298 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKD----IEALKADVEKFASSFDMPGF 798 I A+AVALKQA TP F+ Y+ QV NA A+ + L +GYSLV+GGT+NHLV DLRP GL G + E++ +L +IT NKN GD SA+ PGG+R+G PA+TSR E DF ++ +F V + LE++ + K L+DF L+ + + + L+ VE+FA +F MPGF Sbjct: 332 IAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKTAK-LQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPGF 501
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2) HSP 1 Score: 152.14 bits (383), Expect = 3.254e-36 Identity = 81/171 (47.37%), Postives = 113/171 (66.08%), Query Frame = -3 Query: 298 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKAD----VEKFASSFDMPGF 798 I A+AVALKQA TP F+ Y+ QV NA A+ + L +GYSLV+GGT+NHLV DLRP GL G + E++ +L +IT NKN GD SA+ PGG+R+G PA+TSR E DF ++ +F V + LE++++ K L+DF L+ + + AD V++FA +F MPGF Sbjct: 332 IAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKRKTAK-LQDFKSFLLKDPETSQHLADLRRRVQQFARAFPMPGF 501
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYC_NEUCR (Serine hydroxymethyltransferase, cytosolic OS=Neurospora crassa GN=for PE=3 SV=2) HSP 1 Score: 147.132 bits (370), Expect = 1.047e-34 Identity = 87/171 (50.88%), Postives = 111/171 (64.91%), Query Frame = -3 Query: 304 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQ----KEYGKLLKDFNKGLVNN--KDIEALKADVEKFASSFDMP 798 I ALAVALKQA++P FK Y ++V ANA AL L GY LV+ GT++H+V DLRP+G+ G +VE L + NIT NKNAV GD SAL PGG+RIGTPAMTSRG E DFE++ F AV L EIQ KE K KDF + + I LK ++ ++++F +P Sbjct: 301 ITALAVALKQAASPEFKEYQQKVVANAKALEKKLKELGYKLVSDGTDSHMVLVDLRPIGVDGARVEFLLEQINITCNKNAVPGDKSALTPGGLRIGTPAMTSRGFGEADFEKVAVFVDEAVKLCKEIQASLPKEANK-QKDFKAKIATSDIPRINELKQEIAAWSNTFPLP 470
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYM_NEUCR (Putative serine hydroxymethyltransferase, mitochondrial OS=Neurospora crassa GN=NCU05805 PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 2.332e-34 Identity = 82/186 (44.09%), Postives = 113/186 (60.75%), Query Frame = -3 Query: 304 IGALAVALKQASTPAFKAYAKQVKANAVALGNYL------TGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQK------------EYGKLLKDFNKGLVNNK---DIEALKADVEKFASSFDMP 798 I ALAVALKQA TP F+AY QV ANA AL L G GY++V+GGT+NHLV DL+P G+ G++VE++ +L + NKN V GD SAL PGG+RIGTPAMT+RG E+DF ++ + RAVT+ + I K + +K F L N + +I L+++VE + ++ P Sbjct: 337 IAALAVALKQAQTPEFRAYQSQVLANATALAARLGEPKDKNGLGYTIVSGGTDNHLVLIDLKPQGIDGSRVERVLELVGVAANKNTVPGDKSALTPGGLRIGTPAMTTRGFTEEDFARVADIIDRAVTIAVRINKAAKEDAVKKGNEKAANRVKTFMDYLGNGETDPEIVQLRSEVESWVGTYPCP 522 The following BLAST results are available for this feature:
BLAST of CF833115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF833115 ID=CF833115; Name=CF833115; organism=Citrus sinensis; type=EST; length=800bpback to top |