CF833115

Overview
NameCF833115
Unique NameCF833115
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.540e-38
Identity = 83/181 (45.86%), Postives = 121/181 (66.85%), Query Frame = -3
Query:  271 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKE-YGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPGFKMSEMKYKD 798
            I  LAVALKQA+TP ++AY +QV +N+      L  KGY LV+GGT+NHLV  +++  G+ G++VEK+ +  +I  NKN V GD SA+ PGG+R+GTPA+TSRG LE+DF ++ +FF  AV + ++++ E  G  LKDF   L ++     +I  L+ DVE++A  F   GF+   MKYK+
Sbjct:  338 ITGLAVALKQATTPEYRAYQEQVLSNSSKFAQALGEKGYELVSGGTDNHLVLVNMKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFLEEDFVKVADFFDAAVKIAVKVKAETQGTKLKDFVATLESSAPIKSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN 518          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.929e-38
Identity = 85/180 (47.22%), Postives = 118/180 (65.56%), Query Frame = -3
Query:  271 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKE-YGKLLKDFNKGLVNN---KDIEALKADVEKFASSFDMPGFKMSEMKYKD 798
            I  LAVALKQA+T  +KAY +QV +N+      L   GY LV+GGTENHLV  +L+  G+ G+KVEK+ +  +I  NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++  FF  AV L ++I+ E  G  LKDF   + ++    +I  L+ DVE++A  F   GF+   MKYK+
Sbjct:  338 ITGLAVALKQATTAEYKAYQEQVMSNSAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSKVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDLAVKLAVKIKGEAKGTKLKDFVTAMESSAIQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.744e-38
Identity = 84/171 (49.12%), Postives = 113/171 (66.08%), Query Frame = -3
Query:  298 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKAD----VEKFASSFDMPGF 798
            I A+AVALKQA TP F+ Y+ Q+  NA A+ N L  +GYSLV+GGT+NHLV  DLRP GL G + E++ +L +IT NKN   GD SA+ PGG+R+G PA+TSRG LE DF ++  F    V + LE++ +  K L+DF   L+ + +     AD    VE+FA +F MPGF
Sbjct:  332 IAAVAVALKQACTPMFREYSLQILKNAQAMANALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRGFLEDDFRKVVGFIDEGVNIGLEVKSKTTK-LQDFKSFLLKDPETSHQLADLRQRVEQFARAFPMPGF 501          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.556e-37
Identity = 83/180 (46.11%), Postives = 116/180 (64.44%), Query Frame = -3
Query:  271 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKE-YGKLLKDFNKGLVNN---KDIEALKADVEKFASSFDMPGFKMSEMKYKD 798
            I  LAVALKQA+T  +KAY +QV +N       L   GY LV+GGTENHLV  +L+  G+ G++VEK+ +  +I  NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++   F  AV L ++I+ E  G  LKDF   + ++    +I  L+ DVE++A  F   GF+   MKYK+
Sbjct:  338 ITGLAVALKQATTAEYKAYQEQVMSNCAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYLFDLAVKLAVKIKGEAQGTKLKDFVAAMQSSAFQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYC_CAEBR (Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 8.562e-37
Identity = 78/170 (45.88%), Postives = 105/170 (61.76%), Query Frame = -3
Query:  301 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPG 798
            I  +AVALKQ  +  F  Y +Q+  NA  L   L   GYSL TGGT+NHL+  DLRP+G+ G + E + DL +I  NKN   GD SAL PGG+R+GTPA+TSRG  E+DFE++G+F H  V +  +   E GK LKDF      N    +++  L   VE+F+  F++PG
Sbjct:  338 IAGIAVALKQCLSEDFVQYGEQILKNAKTLAERLKKHGYSLATGGTDNHLLLVDLRPIGVEGARAEHILDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFKEQDFEKVGDFIHEGVQIAKKYNAEAGKTLKDFKAFTATNEQFKQEVAELAKRVEEFSGKFEIPG 507          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 1.118e-36
Identity = 78/170 (45.88%), Postives = 106/170 (62.35%), Query Frame = -3
Query:  301 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPG 798
            I  +AVAL+Q  +  F  Y +QV  NA  L   +   GY+L TGGT+NHL+  DLRP+G+ G + E + DL +I  NKN   GD SAL PGG+R+GTPA+TSRG  E+DFE++G+F H  V +  +   E GK LKDF      N    KD+  L   VE+F++ F++PG
Sbjct:  334 IAGIAVALRQCLSEDFVQYGEQVLKNAKTLAERMKKHGYALATGGTDNHLLLVDLRPIGVEGARAEHVLDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFQEQDFEKVGDFIHEGVQIAKKYNAEAGKTLKDFKSFTETNEPFKKDVADLAKRVEEFSTKFEIPG 503          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 2.491e-36
Identity = 81/171 (47.37%), Postives = 113/171 (66.08%), Query Frame = -3
Query:  298 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKD----IEALKADVEKFASSFDMPGF 798
            I A+AVALKQA TP F+ Y+ QV  NA A+ + L  +GYSLV+GGT+NHLV  DLRP GL G + E++ +L +IT NKN   GD SA+ PGG+R+G PA+TSR   E DF ++ +F    V + LE++ +  K L+DF   L+ + +    +  L+  VE+FA +F MPGF
Sbjct:  332 IAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKTAK-LQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPGF 501          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 3.254e-36
Identity = 81/171 (47.37%), Postives = 113/171 (66.08%), Query Frame = -3
Query:  298 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKAD----VEKFASSFDMPGF 798
            I A+AVALKQA TP F+ Y+ QV  NA A+ + L  +GYSLV+GGT+NHLV  DLRP GL G + E++ +L +IT NKN   GD SA+ PGG+R+G PA+TSR   E DF ++ +F    V + LE++++  K L+DF   L+ + +     AD    V++FA +F MPGF
Sbjct:  332 IAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKRKTAK-LQDFKSFLLKDPETSQHLADLRRRVQQFARAFPMPGF 501          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYC_NEUCR (Serine hydroxymethyltransferase, cytosolic OS=Neurospora crassa GN=for PE=3 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 1.047e-34
Identity = 87/171 (50.88%), Postives = 111/171 (64.91%), Query Frame = -3
Query:  304 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQ----KEYGKLLKDFNKGLVNN--KDIEALKADVEKFASSFDMP 798
            I ALAVALKQA++P FK Y ++V ANA AL   L   GY LV+ GT++H+V  DLRP+G+ G +VE L +  NIT NKNAV GD SAL PGG+RIGTPAMTSRG  E DFE++  F   AV L  EIQ    KE  K  KDF   +  +    I  LK ++  ++++F +P
Sbjct:  301 ITALAVALKQAASPEFKEYQQKVVANAKALEKKLKELGYKLVSDGTDSHMVLVDLRPIGVDGARVEFLLEQINITCNKNAVPGDKSALTPGGLRIGTPAMTSRGFGEADFEKVAVFVDEAVKLCKEIQASLPKEANK-QKDFKAKIATSDIPRINELKQEIAAWSNTFPLP 470          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYM_NEUCR (Putative serine hydroxymethyltransferase, mitochondrial OS=Neurospora crassa GN=NCU05805 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.332e-34
Identity = 82/186 (44.09%), Postives = 113/186 (60.75%), Query Frame = -3
Query:  304 IGALAVALKQASTPAFKAYAKQVKANAVALGNYL------TGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQK------------EYGKLLKDFNKGLVNNK---DIEALKADVEKFASSFDMP 798
            I ALAVALKQA TP F+AY  QV ANA AL   L       G GY++V+GGT+NHLV  DL+P G+ G++VE++ +L  +  NKN V GD SAL PGG+RIGTPAMT+RG  E+DF ++ +   RAVT+ + I K            +    +K F   L N +   +I  L+++VE +  ++  P
Sbjct:  337 IAALAVALKQAQTPEFRAYQSQVLANATALAARLGEPKDKNGLGYTIVSGGTDNHLVLIDLKPQGIDGSRVERVLELVGVAANKNTVPGDKSALTPGGLRIGTPAMTTRGFTEEDFARVADIIDRAVTIAVRINKAAKEDAVKKGNEKAANRVKTFMDYLGNGETDPEIVQLRSEVESWVGTYPCP 522          
The following BLAST results are available for this feature:
BLAST of CF833115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYM_SOLTU4.540e-3845.86Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_FLAPR5.929e-3847.22Serine hydroxymethyltransferase 1, mitochondrial O... [more]
GLYM_BOVIN7.744e-3849.12Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYN_FLAPR6.556e-3746.11Serine hydroxymethyltransferase 2, mitochondrial O... [more]
GLYC_CAEBR8.562e-3745.88Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYC_CAEEL1.118e-3645.88Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYM_HUMAN2.491e-3647.37Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_RABIT3.254e-3647.37Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_NEUCR1.047e-3450.88Serine hydroxymethyltransferase, cytosolic OS=Neur... [more]
GLYM_NEUCR2.332e-3444.09Putative serine hydroxymethyltransferase, mitochon... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_03A20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833115 ID=CF833115; Name=CF833115; organism=Citrus sinensis; type=EST; length=800bp
TTTTTTTTTTTTTTTTTAAGAAATAAAATACATAAATTTGTTCTTTTATT
TGTAGATGAACAATCATCATTTGACCAAAGAGAAACGGATCTCACTTTCA
CAATATGGTGGGTACCAATTAAAAAAAAAAAAAAAGTTAAAACGAAAGCG
TTTAAACCTAGGACAACAAAAGGCAAAGATGCATGCAATTTTTTTTCTTC
TCTTTCTGTTTTTCAACACTAAAGAGTTGCTAACAACACAGTAACAATAA
TGATGATACTTTGAGACCTAATCCTTGTACTTCATCTCGGACATTTTAAA
GCCGGGCATGTCAAATGAGCTGGCGAACTTCTCAACATCAGCCTTGAGGG
CCTCGATGTCCTTGTTGTTCACCAAACCCTTGTTGAAGTCCTTCAAGAGC
TTTCCATACTCCTTTTGAATTTCCAACGTGAGGGTCACAGCGCGGTGAAA
AAACTCTCCAATTTGCTCGAAGTCCTTCTCCAACAAACCTCTGGAAGTCA
TGGCAGGAGTACCGATTCTTACTCCTCCAGGGGCCAAGGCACTGCTGTCA
CCAAACACAGCATTCTTGTTCACAGTAATGTTGCAAAGGTCACAGAGCTT
CTCAACCTTATTGCCAGTCAATCCAAGAGGGCGTAAATCCCAAAAAACAA
GGTGGTTCTCAGTTCCACCAGTGACAAGGCTGTATCCCTTGCCCGTCAGG
TAGTTCCCAAGTGCAACTGCATTGGCCTTGACTTGTTTCGCATAGGCCTT
GAATGCAGGGGTCGAGGCCTGTTTCAGGGCAACAGCTAGAGCACCAATCT
back to top