CF833115

Overview
NameCF833115
Unique NameCF833115
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_PELLD (Serine hydroxymethyltransferase OS=Pelodictyon luteolum (strain DSM 273) GN=glyA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.123e-20
Identity = 55/123 (44.72%), Postives = 70/123 (56.91%), Query Frame = -3
Query:  433 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVT 798
            I   AVA  +A  P F+ YA QV+ NA ++    T  GY++V+GGT+NHL+  DLR   + G   E L     ITVNKN V F D S     G+RIGT AMT+RG+ E D   I E   R +T
Sbjct:  284 IAGKAVAFGEALRPEFREYAVQVRKNAASMAERFTSLGYNIVSGGTKNHLMLLDLRNKDVNGKVAENLLHDAGITVNKNMVPFDDKSPFVTSGIRIGTAAMTTRGMKEADATLIAELIDRVIT 406          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_OLICO (Serine hydroxymethyltransferase OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=glyA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.123e-20
Identity = 53/115 (46.09%), Postives = 69/115 (60.00%), Query Frame = -3
Query:  457 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG 798
            I A AVA K+A  P FK YAK +  NA AL   L G G+ +V+GGT+NHL+  DLRP GL GN  E+      +T NKN + F         G+R+GTPA T+RG    +F+Q+G
Sbjct:  279 IAAKAVAFKEALQPDFKVYAKNIVENARALAETLRGHGFEIVSGGTDNHLMLVDLRPKGLKGNISERALVRSGLTCNKNGIPFDPEKPFVTSGLRLGTPATTTRGFGVAEFKQVG 393          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_METHJ (Serine hydroxymethyltransferase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=glyA PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.123e-20
Identity = 53/117 (45.30%), Postives = 73/117 (62.39%), Query Frame = -3
Query:  451 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEF 798
            I A AV  K+AST  FK Y++QV  NA  +   L+  G  LV+GGT+NHL   DL   G+TG + E+      ITVNKN +  ++ S     G+R+GTPA+TSRG+ E + +QIGE+
Sbjct:  263 IAAKAVCFKEASTKEFKKYSEQVVKNARTMAETLSANGVRLVSGGTDNHLCLLDLTNFGITGLEAEQALGNAGITVNKNTIPNETKSPFVTSGLRVGTPAVTSRGMKESEMKQIGEW 379          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_BRASB (Serine hydroxymethyltransferase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=glyA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.123e-20
Identity = 53/115 (46.09%), Postives = 68/115 (59.13%), Query Frame = -3
Query:  457 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG 798
            I A AVA  +A  P FK YAK +  NA AL   L  +G+ +V+GGT+NHL+  DLRP GL GN  EK      IT NKN + F         G+R+GTPA T+RG    +F+Q+G
Sbjct:  280 IAAKAVAFAEALRPEFKTYAKNIVENAKALAESLRAQGFDIVSGGTDNHLMLVDLRPKGLKGNVSEKALVRAGITCNKNGIPFDPEKPFVTSGLRLGTPAATTRGFGVAEFQQVG 394          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_TRIEI (Serine hydroxymethyltransferase OS=Trichodesmium erythraeum (strain IMS101) GN=glyA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.467e-20
Identity = 54/116 (46.55%), Postives = 71/116 (61.21%), Query Frame = -3
Query:  454 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGE 798
            I A AVA  +A  P FK Y+ QV  NA AL   L  +   +V+GGTENH++  DLR + +TG K +KL    NIT NKN V F   S     G+R+G+PAMTSRG+   +F +IG+
Sbjct:  267 IAAKAVAFGEALKPEFKTYSGQVIENAAALATQLQERKLKIVSGGTENHVMLVDLRSVSMTGKKADKLMSGVNITANKNTVPFDPESPFVTSGLRLGSPAMTSRGMKATEFIEIGD 382          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_NITHX (Serine hydroxymethyltransferase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=glyA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.467e-20
Identity = 54/115 (46.96%), Postives = 68/115 (59.13%), Query Frame = -3
Query:  457 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG 798
            I A AVA  +A  P FK YAK V  NA AL   L G G+ +++GGT+NHL+  DLRP GL GN  EK      IT NKN + F         G+R+GTPA T+RG    +F+Q+G
Sbjct:  279 IAAKAVAFGEALRPDFKIYAKNVVENAKALAESLRGNGFDIISGGTDNHLMLVDLRPKGLRGNVSEKALVRAAITCNKNGIPFDPEKPFVTSGLRLGTPAATTRGFGVAEFKQVG 393          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_LAWIP (Serine hydroxymethyltransferase OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=glyA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.467e-20
Identity = 62/145 (42.76%), Postives = 79/145 (54.48%), Query Frame = -3
Query:  385 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAV------TLTLEIQKEYGKLLKDF 798
            I A AVAL +AS  +F  Y KQV  NA  L   L   G++LV+GGT+NHL+  DL    +TG   EK  D   ITVNKN V F   S     G+RIGTPA+T+RGL E+D  ++  +   A+      T   EI KE     + F
Sbjct:  263 IAAKAVALGEASKASFVTYQKQVILNAKTLAKQLLDAGFNLVSGGTDNHLLLIDLTNKKITGKDAEKALDQAGITVNKNTVPFETLSPFVTSGIRIGTPALTTRGLCEQDMIKVANWIVTALNNINNETQLKEINKEVTYFARQF 407          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_THENN (Serine hydroxymethyltransferase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=glyA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.916e-20
Identity = 51/116 (43.97%), Postives = 70/116 (60.34%), Query Frame = -3
Query:  454 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGE 798
            I A AV  K+A +  F+ Y KQV  NA  +   +  +GY +V+GGT+ HL   DL P  +TG   EK  + C ITVNKN +  +  S     G+RIGTPA+T+RG+ EK+ E+I E
Sbjct:  265 IAAKAVCFKEAMSEEFREYQKQVVKNAKKMAEEMKKRGYRIVSGGTDTHLFLVDLTPKDITGKAAEKALESCGITVNKNTIPNEKRSPFVASGIRIGTPAVTTRGMKEKEMEEIVE 380          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_PELCD (Serine hydroxymethyltransferase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=glyA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.916e-20
Identity = 58/165 (35.15%), Postives = 86/165 (52.12%), Query Frame = -3
Query:  307 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDM 798
            I A AV+ K+A  P FK Y+ QV  NA  L + L  +G +LV+GGT+NHL+  D      TG   EK  +   ITVNKN+V F   S     G+R+GTPA T+RGL E + E++ ++  RA+                    + N+ ++ A+K +V +    F +
Sbjct:  264 IAAKAVSFKEALAPEFKEYSTQVVKNAKVLADALVKRGLNLVSGGTDNHLILVDFTGTETTGKMAEKALEKAGITVNKNSVPFETRSPFVTSGIRLGTPATTTRGLKEAEMERVADWVVRAL------------------DNMENDTELAAIKGEVREMCKRFPL 410          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_DESPS (Serine hydroxymethyltransferase OS=Desulfotalea psychrophila GN=glyA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.916e-20
Identity = 54/120 (45.00%), Postives = 72/120 (60.00%), Query Frame = -3
Query:  436 ALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAV 792
            A+AVALK+AST +FK Y  QV  NA +L + L  KG++LVTGGTENHL+  DL    +TG +  K  D   I +N N+V F       P G+R+GT A+TSRG  + +   +G    R V
Sbjct:  273 AIAVALKEASTDSFKKYTAQVVENAASLADVLIEKGFNLVTGGTENHLMLIDLSNKNITGKQAAKALDAAGIVLNCNSVPFDKRKPFDPSGIRLGTCAITSRGFAKAEMVILGNMMDRVV 392          
The following BLAST results are available for this feature:
BLAST of CF833115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_PELLD1.123e-2044.72Serine hydroxymethyltransferase OS=Pelodictyon lut... [more]
GLYA_OLICO1.123e-2046.09Serine hydroxymethyltransferase OS=Oligotropha car... [more]
GLYA_METHJ1.123e-2045.30Serine hydroxymethyltransferase OS=Methanospirillu... [more]
GLYA_BRASB1.123e-2046.09Serine hydroxymethyltransferase OS=Bradyrhizobium ... [more]
GLYA_TRIEI1.467e-2046.55Serine hydroxymethyltransferase OS=Trichodesmium e... [more]
GLYA_NITHX1.467e-2046.96Serine hydroxymethyltransferase OS=Nitrobacter ham... [more]
GLYA_LAWIP1.467e-2042.76Serine hydroxymethyltransferase OS=Lawsonia intrac... [more]
GLYA_THENN1.916e-2043.97Serine hydroxymethyltransferase OS=Thermotoga neap... [more]
GLYA_PELCD1.916e-2035.15Serine hydroxymethyltransferase OS=Pelobacter carb... [more]
GLYA_DESPS1.916e-2045.00Serine hydroxymethyltransferase OS=Desulfotalea ps... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03A20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833115 ID=CF833115; Name=CF833115; organism=Citrus sinensis; type=EST; length=800bp
TTTTTTTTTTTTTTTTTAAGAAATAAAATACATAAATTTGTTCTTTTATT
TGTAGATGAACAATCATCATTTGACCAAAGAGAAACGGATCTCACTTTCA
CAATATGGTGGGTACCAATTAAAAAAAAAAAAAAAGTTAAAACGAAAGCG
TTTAAACCTAGGACAACAAAAGGCAAAGATGCATGCAATTTTTTTTCTTC
TCTTTCTGTTTTTCAACACTAAAGAGTTGCTAACAACACAGTAACAATAA
TGATGATACTTTGAGACCTAATCCTTGTACTTCATCTCGGACATTTTAAA
GCCGGGCATGTCAAATGAGCTGGCGAACTTCTCAACATCAGCCTTGAGGG
CCTCGATGTCCTTGTTGTTCACCAAACCCTTGTTGAAGTCCTTCAAGAGC
TTTCCATACTCCTTTTGAATTTCCAACGTGAGGGTCACAGCGCGGTGAAA
AAACTCTCCAATTTGCTCGAAGTCCTTCTCCAACAAACCTCTGGAAGTCA
TGGCAGGAGTACCGATTCTTACTCCTCCAGGGGCCAAGGCACTGCTGTCA
CCAAACACAGCATTCTTGTTCACAGTAATGTTGCAAAGGTCACAGAGCTT
CTCAACCTTATTGCCAGTCAATCCAAGAGGGCGTAAATCCCAAAAAACAA
GGTGGTTCTCAGTTCCACCAGTGACAAGGCTGTATCCCTTGCCCGTCAGG
TAGTTCCCAAGTGCAACTGCATTGGCCTTGACTTGTTTCGCATAGGCCTT
GAATGCAGGGGTCGAGGCCTGTTTCAGGGCAACAGCTAGAGCACCAATCT
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