CF833115

Overview
NameCF833115
Unique NameCF833115
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYC_CANAL (Serine hydroxymethyltransferase, cytosolic OS=Candida albicans GN=SHM2 PE=1 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 9.796e-33
Identity = 76/168 (45.24%), Postives = 110/168 (65.48%), Query Frame = -3
Query:  307 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGK---LLKDFNKGLVNNKD-IEALKADVEKFASSFDM 798
            I ALA ALKQA+TP FK Y +QV  NA AL +  T KGY LV+ GT++H+V   L+   + G +VE +C+  NI +NKN++ GD SAL PGGVRIG PAMT+RGL E+DF++I  +   AV    E+Q +  K    LKDF   +  + + ++A++ ++ ++A SF +
Sbjct:  301 IAALATALKQANTPEFKEYQEQVLKNAKALESEFTKKGYKLVSDGTDSHMVLVSLKDKQIDGARVETVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGLGEEDFKKIVSYIDFAVNYAKEVQSQLPKDANKLKDFKNAVSGDSEKLKAVRDEIYQWAGSFPL 468          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYM_CANGA (Serine hydroxymethyltransferase, mitochondrial OS=Candida glabrata GN=SHM1 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.182e-32
Identity = 71/173 (41.04%), Postives = 108/173 (62.43%), Query Frame = -3
Query:  301 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQ-------KEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 798
            I ALAVALKQA TP F  Y KQV +NA A G+ L  +G+ LV+GGT+NHL+  +L  +G+ G ++E + +  NI  NKN + GD SAL P G+R+GTPAMT+RG  E+DF+++ E+   AV L++ ++       K+    L  F +    ++ ++ L  +V  +  +F +PG
Sbjct:  311 ISALAVALKQAKTPEFVEYQKQVVSNAKAFGDELLKRGFELVSGGTDNHLLLLNLSNMGIDGARLEAILEKINIAANKNTIPGDKSALFPSGLRVGTPAMTTRGFQEQDFKKVAEYIDNAVKLSIALKSQESADAKDVRSKLNSFKQLCDQSEPVQKLAEEVSSWVGTFPVPG 483          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYC_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=shm2 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.847e-31
Identity = 81/173 (46.82%), Postives = 104/173 (60.12%), Query Frame = -3
Query:  304 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQ----KEYGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMP 798
            I ALAVAL QA TP F  Y K V +NA A+ N    +GY LV+GGT+ HLV  DL   G+ G +VE++ +L NI+ NKN V GD SAL P G+R+GTPA T+RG  EKDFE++ E     V+LT +I     KE     +DF K  V +     +I  LK +V  +A  FD P
Sbjct:  300 ITALAVALGQAKTPEFYQYQKDVLSNAKAMANAFITRGYKLVSGGTDTHLVLVDLTDKGVDGARVERILELVNISANKNTVPGDKSALIPRGLRLGTPACTTRGFDEKDFERVVELIDEVVSLTKKINEAALKEGKSKFRDF-KAYVGDGSKFSEIAKLKKEVITWAGKFDFP 471          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYC_YEAST (Serine hydroxymethyltransferase, cytosolic OS=Saccharomyces cerevisiae GN=SHM2 PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 4.116e-31
Identity = 73/168 (43.45%), Postives = 104/168 (61.90%), Query Frame = -3
Query:  307 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGK---LLKDFNKGLVNNKDI-EALKADVEKFASSFDM 798
            I ALA ALKQA+TP FK Y  QV  NA AL +     GY LV+ GT++H+V   LR  G+ G +VE +C+  NI +NKN++ GD SAL PGGVRIG PAMT+RG+ E+DF +I ++ ++AV    ++Q+   K    LKDF   +    D+    K ++  +A  + +
Sbjct:  300 IAALATALKQAATPEFKEYQTQVLKNAKALESEFKNLGYRLVSNGTDSHMVLVSLREKGVDGARVEYICEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGMGEEDFHRIVQYINKAVEFAQQVQQSLPKDACRLKDFKAKVDEGSDVLNTWKKEIYDWAGEYPL 467          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYM_KLULA (Serine hydroxymethyltransferase, mitochondrial OS=Kluyveromyces lactis GN=SHM1 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.762e-30
Identity = 72/173 (41.62%), Postives = 101/173 (58.38%), Query Frame = -3
Query:  301 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKD-------IEALKADVEKFASSFDMPG 798
            I ALAVALKQA+TP FK Y   V  NA   G  L  KG+ LV+GGT+ HL+  +L  LG+ G ++E L +  NI  NKN + GD SAL P G+R+GTPAMT+RG   ++F Q+  +  RAV L + I+ +     KD    L + K+       ++ L  +V ++   F +PG
Sbjct:  324 ISALAVALKQAATPEFKEYQAAVVENARIFGEELVKKGFELVSGGTDTHLILINLSNLGIDGARLETLLENINIAANKNTIPGDKSALFPSGLRVGTPAMTTRGFGPQEFAQVAAYIDRAVKLAIGIKSQESPDAKDARSKLASFKELCKESDQVKQLADEVYQWVGEFPVPG 496          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYC_CANGA (Serine hydroxymethyltransferase, cytosolic OS=Candida glabrata GN=SHM2 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.324e-29
Identity = 74/168 (44.05%), Postives = 101/168 (60.12%), Query Frame = -3
Query:  307 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGK---LLKDFNKGLVNNKD-IEALKADVEKFASSFDM 798
            I ALA ALKQA+TP FK Y  QV  NA AL N     GY LV+ GT++H+V   LR  G+ G +VE +C+  NI +NKN++ GD SAL PGGVRIG PAMT+RG+ E+DF +I  +  +AV    + Q    K    LKDF   +    D +  LK ++  + + + +
Sbjct:  300 IAALATALKQAATPEFKEYQTQVLKNAKALENEFQTLGYRLVSNGTDSHMVLVSLREKGVDGARVEYVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGMGEEDFHRIVRYIDQAVKFAEQTQSSLPKEANKLKDFKAKVDEIADQLAPLKKEIYDWTAEYPL 467          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYM_ASHGO (Serine hydroxymethyltransferase, mitochondrial OS=Ashbya gossypii GN=SHM1 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.950e-29
Identity = 68/160 (42.50%), Postives = 97/160 (60.62%), Query Frame = -3
Query:  319 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFAS 798
            I ALAVALKQA+TP FK Y   V  NA   G  L+ +G+SLV+GGT+ HL+  DL P+G+ G+++E + +  NI  NKN + GD SAL P G+R+GTPAMT+RG    +F ++  + + AV L + ++ +     KD    L + K   A    V K A+
Sbjct:  323 ISALAVALKQAATPEFKNYQTAVVENAKVFGEELSKRGFSLVSGGTDTHLLLIDLSPMGIDGSRLETILERLNIAANKNTIPGDKSALYPSGLRVGTPAMTTRGFGPAEFGRVAAYINEAVKLAIGLKSQEPVDAKDAKTRLAHFKSFCAESEQVTKLAN 482          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYM_CANAL (Serine hydroxymethyltransferase, mitochondrial OS=Candida albicans GN=SHM1 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.031e-29
Identity = 69/171 (40.35%), Postives = 104/171 (60.82%), Query Frame = -3
Query:  301 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQ-KEYGK----LLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 798
            I ALAVALKQ + P +  Y ++V +NA    + L  KG+ LV+ GT+ HL+  DLR   + G +VE + +  NI  NKN V GD SAL P G+R+GTPAMT+RG   ++F+++ EF  +AV + +E++ +E GK    LL  F K    +  ++ L  +V  + S + +PG
Sbjct:  321 ISALAVALKQCTEPEYVKYQQEVVSNAKHFADALVSKGFKLVSDGTDTHLILVDLRSRNIDGARVEAVLERANIAANKNTVPGDVSALFPSGLRVGTPAMTTRGFGPEEFDKVAEFIDQAVNIAIELKAQEQGKVPKELLASFKKLADESDKVKQLDKEVVSWVSKYPVPG 491          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYD_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=SPAC24C9.12c PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.571e-29
Identity = 70/170 (41.18%), Postives = 101/170 (59.41%), Query Frame = -3
Query:  307 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGK---LLKDFNKGLVNNK---DIEALKADVEKFASSFDM 798
            I ALAVALKQ   PA+K Y  QV  NA         +GY L   GT++H+V  D++  G+ G + E++ +L NI  NKN V  D SA +P G+R+GTPAMT+RG  E+DF ++ ++  RA+T    +QKE  K    LKDF   L   +   ++  L+ +V ++ASSF +
Sbjct:  294 ITALAVALKQCQEPAYKEYQAQVVKNAKVCEEEFKKRGYKLAADGTDSHMVLVDVKSKGVDGARAERVLELINIVTNKNTVPSDKSAFSPSGIRVGTPAMTTRGFKEQDFVRVVDYIDRALTFAANLQKELPKDANKLKDFKAKLGEGEQYPELVQLQKEVAEWASSFPL 463          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYM_YEAST (Serine hydroxymethyltransferase, mitochondrial OS=Saccharomyces cerevisiae GN=SHM1 PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 8.582e-29
Identity = 70/173 (40.46%), Postives = 101/173 (58.38%), Query Frame = -3
Query:  301 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTL-----TLE--IQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 798
            IGA+AVALKQA +P FK Y +++  N+      LT  GY LV+GGT+NHL+  DL    + G +VE +    NI  NKN + GD SAL P G+RIGTPAMT+RG   ++F Q+ ++   AV L     TLE   + +    L +F K    + ++ AL  ++ K+   + +PG
Sbjct:  316 IGAMAVALKQAMSPEFKEYQQKIVDNSKWFAQELTKMGYKLVSGGTDNHLIVIDLSGTQVDGARVETILSALNIAANKNTIPGDKSALFPSGLRIGTPAMTTRGFGREEFSQVAKYIDSAVKLAENLKTLEPTTKLDARSRLNEFKKLCNESSEVAALSGEISKWVGQYPVPG 488          
The following BLAST results are available for this feature:
BLAST of CF833115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC_CANAL9.796e-3345.24Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYM_CANGA2.182e-3241.04Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_SCHPO1.847e-3146.82Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYC_YEAST4.116e-3143.45Serine hydroxymethyltransferase, cytosolic OS=Sacc... [more]
GLYM_KLULA7.762e-3041.62Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_CANGA1.324e-2944.05Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYM_ASHGO2.950e-2942.50Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_CANAL5.031e-2940.35Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYD_SCHPO6.571e-2941.18Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYM_YEAST8.582e-2940.46Serine hydroxymethyltransferase, mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03A20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833115 ID=CF833115; Name=CF833115; organism=Citrus sinensis; type=EST; length=800bp
TTTTTTTTTTTTTTTTTAAGAAATAAAATACATAAATTTGTTCTTTTATT
TGTAGATGAACAATCATCATTTGACCAAAGAGAAACGGATCTCACTTTCA
CAATATGGTGGGTACCAATTAAAAAAAAAAAAAAAGTTAAAACGAAAGCG
TTTAAACCTAGGACAACAAAAGGCAAAGATGCATGCAATTTTTTTTCTTC
TCTTTCTGTTTTTCAACACTAAAGAGTTGCTAACAACACAGTAACAATAA
TGATGATACTTTGAGACCTAATCCTTGTACTTCATCTCGGACATTTTAAA
GCCGGGCATGTCAAATGAGCTGGCGAACTTCTCAACATCAGCCTTGAGGG
CCTCGATGTCCTTGTTGTTCACCAAACCCTTGTTGAAGTCCTTCAAGAGC
TTTCCATACTCCTTTTGAATTTCCAACGTGAGGGTCACAGCGCGGTGAAA
AAACTCTCCAATTTGCTCGAAGTCCTTCTCCAACAAACCTCTGGAAGTCA
TGGCAGGAGTACCGATTCTTACTCCTCCAGGGGCCAAGGCACTGCTGTCA
CCAAACACAGCATTCTTGTTCACAGTAATGTTGCAAAGGTCACAGAGCTT
CTCAACCTTATTGCCAGTCAATCCAAGAGGGCGTAAATCCCAAAAAACAA
GGTGGTTCTCAGTTCCACCAGTGACAAGGCTGTATCCCTTGCCCGTCAGG
TAGTTCCCAAGTGCAACTGCATTGGCCTTGACTTGTTTCGCATAGGCCTT
GAATGCAGGGGTCGAGGCCTGTTTCAGGGCAACAGCTAGAGCACCAATCT
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