CF833115

Overview
NameCF833115
Unique NameCF833115
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYC_ASHGO (Serine hydroxymethyltransferase, cytosolic OS=Ashbya gossypii GN=SHM2 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.582e-29
Identity = 72/169 (42.60%), Postives = 100/169 (59.17%), Query Frame = -3
Query:  304 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGK---LLKDFNKGLVNNKD-IEALKADVEKFASSFDMP 798
            I ALA ALKQA+TP F+ Y + V  NA  L        Y LV+ GT++H+V   LR  G+ G +VE +C+  NI +NKN++ GD SAL PGGVRIG PAMT+RG+ E+DF +I  + +RAV +   IQ+   K    LKDF   +    D I  L  ++  +   + +P
Sbjct:  300 ISALATALKQATTPEFREYQELVLKNAKVLETEFKKLNYRLVSDGTDSHMVLVSLREKGVDGARVEHVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGMGEEDFARIVGYINRAVEIARSIQQSLPKEANRLKDFKAKVEGGTDEIAQLAQEIYSWTEEYPLP 468          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_SYMTH (Serine hydroxymethyltransferase OS=Symbiobacterium thermophilum GN=glyA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.049e-26
Identity = 64/123 (52.03%), Postives = 79/123 (64.23%), Query Frame = -3
Query:  433 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVT 798
            I A AVA KQ S P ++AY  QV  NA AL   L  +GY LVTGGT+NHL+  DLRP G+TG   E L D  +ITVNKNA+  D    +   G+RIGTPAMT+RG+ E +  QI +   RA+T
Sbjct:  263 IAAKAVAFKQLSDPDYRAYCGQVVKNAKALAQALLERGYRLVTGGTDNHLMLVDLRPKGITGRDAEHLLDRVSITVNKNAIPNDPEKPMVTSGIRIGTPAMTTRGMKEAEMVQIADLIDRAIT 385          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_HELMI (Serine hydroxymethyltransferase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=glyA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.789e-26
Identity = 63/119 (52.94%), Postives = 77/119 (64.71%), Query Frame = -3
Query:  445 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFH 798
            I A AVA ++A  PAF AY KQ+ ANA AL   LT +G+ LV+GGT+NHL+  DLR   LTG + EK  D C ITVNKNA+ F   S     G+RIGTPA TSRG+ E   +Q+ E  H
Sbjct:  266 IAAKAVAFQEAMAPAFTAYQKQIAANAAALAKGLTDRGFQLVSGGTDNHLMLVDLRNKQLTGKEAEKRLDECRITVNKNAIPFDPQSPFVTSGIRIGTPAATSRGMDEAAMDQVAEAIH 384          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_DICT6 (Serine hydroxymethyltransferase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=glyA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.731e-24
Identity = 61/145 (42.07%), Postives = 84/145 (57.93%), Query Frame = -3
Query:  385 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVT------LTLEIQKEYGKLLKDF 798
            I A AVA K+A TP FK Y KQ+  NA A+   L   GY LV+GGT+NHL+  DLR  G+TG + EK  +   ITVNKNA+ F         G+RIGTPA+T+RG+ E +   +    H  ++      +  +++KE  +L K F
Sbjct:  263 IAAKAVAFKEAMTPEFKEYQKQIILNAKAMAEELMRLGYRLVSGGTDNHLMLVDLRDKGITGKEAEKALEEAGITVNKNAIPFDPQPPTVTSGIRIGTPALTTRGMKEDEMRYVARLIHEVLSNFKDSKVKEKVKKEVEELCKQF 407          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_ANATD (Serine hydroxymethyltransferase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=glyA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.731e-24
Identity = 60/123 (48.78%), Postives = 78/123 (63.41%), Query Frame = -3
Query:  433 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVT 798
            I A AVALK+A T  FK Y  Q+  NA AL   L  +G+ LV+GGT+NHL+  DLR  G+TG   EK+ D  NIT NKNAV F   S +   G+R+GTPA+T+RG  E D  ++ +  H A+T
Sbjct:  266 IAAKAVALKEAMTEEFKNYQVQILKNAKALSTRLIERGFRLVSGGTDNHLMLVDLRNKGITGKDAEKILDEHNITCNKNAVPFDTQSPMITSGIRLGTPAVTTRGFKEGDMLEVADIIHDALT 388          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_CALS8 (Serine hydroxymethyltransferase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=glyA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.364e-24
Identity = 58/123 (47.15%), Postives = 78/123 (63.41%), Query Frame = -3
Query:  433 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVT 798
            I A AVALK+A T  F+ Y  Q+  NA AL   L  +G+ LV+GGT+NHL+  DLR  G+TG   EK  D  NIT NKNA+ F   S +   G+R+GTPA+T+RG  E+D  ++ +  H A+T
Sbjct:  268 IAAKAVALKEAMTEEFRNYQIQILKNAKALSERLIERGFRLVSGGTDNHLMLVDLRNKGITGKDAEKRLDSLNITCNKNAIPFDTQSPMVTSGIRLGTPAVTTRGFKEEDMIEVADIIHDALT 390          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_DICTD (Serine hydroxymethyltransferase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=glyA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.312e-24
Identity = 61/145 (42.07%), Postives = 84/145 (57.93%), Query Frame = -3
Query:  385 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVT------LTLEIQKEYGKLLKDF 798
            I A AVA K+A +P FK Y KQ+  NA A+   L   GY LV+GGT+NHL+  DLR  G+TG + EK  +   ITVNKNA+ F         G+RIGTPA+T+RG+ E +   I    H  ++      +  +++KE  +L K F
Sbjct:  263 IAAKAVAFKEAMSPEFKEYQKQIVLNAKAMAEELIKLGYRLVSGGTDNHLMLVDLRDKGITGKEAEKALEEAGITVNKNAIPFDPQPPTITSGIRIGTPALTTRGMKEDEMRYIARLIHEVLSNFKDERVKEKVKKEVEELCKQF 407          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_EXIS2 (Serine hydroxymethyltransferase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=glyA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.086e-23
Identity = 59/116 (50.86%), Postives = 73/116 (62.93%), Query Frame = -3
Query:  454 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGE 798
            I A AVA  +A  P FK Y +QV ANA  LG  LT +G  +V+GGT+NHL+  DL+PLG+TG   E   D   ITVNKN + F  +S     G+RIGT AMTSRG  E + +QI E
Sbjct:  268 IAAKAVAFAEALAPEFKDYIEQVVANAKVLGEELTARGLRIVSGGTDNHLLLVDLQPLGITGKLAEHALDEAGITVNKNTIPFDPASPFVTSGIRIGTAAMTSRGFKEAEMKQIAE 383          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_PELTS (Serine hydroxymethyltransferase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=glyA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.418e-23
Identity = 63/137 (45.99%), Postives = 84/137 (61.31%), Query Frame = -3
Query:  391 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLK 798
            I A AVA K+A  P FK Y +++ +NA AL + L  +G+ LV+GGT+NHL+  DLR   +TG + ++L D   +TVNKNAV F         G+RIGTPA+TSRGL E D  QI E    A+    E + + GKL K
Sbjct:  268 IAAKAVAFKEAMEPGFKEYQRKIVSNARALADALLERGFELVSGGTDNHLILVDLRSKKITGREAQELFDAVGVTVNKNAVPFDPQPPNIASGIRIGTPAVTSRGLNEDDMVQIAEIMDYAI----EHRDDRGKLEK 400          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_EUBR3 (Serine hydroxymethyltransferase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=glyA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.159e-23
Identity = 56/116 (48.28%), Postives = 71/116 (61.21%), Query Frame = -3
Query:  454 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGE 798
            I A AV  K+A  P FK Y KQ+  NA AL   L  +G  +V+ GT+NHL+  DL P GLTG  +EKL D  +IT NKN +  D        G+R+GTPA TSRGL E DF+++ E
Sbjct:  267 IAAKAVCFKEALQPEFKEYQKQIVKNAQALCKGLQSRGIKIVSDGTDNHLMLVDLTPFGLTGKSIEKLLDAAHITANKNTIPNDPQKPFVTSGIRLGTPAATSRGLKEDDFDKVAE 382          
The following BLAST results are available for this feature:
BLAST of CF833115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC_ASHGO8.582e-2942.60Serine hydroxymethyltransferase, cytosolic OS=Ashb... [more]
GLYA_SYMTH1.049e-2652.03Serine hydroxymethyltransferase OS=Symbiobacterium... [more]
GLYA_HELMI1.789e-2652.94Serine hydroxymethyltransferase OS=Heliobacterium ... [more]
GLYA_DICT63.731e-2442.07Serine hydroxymethyltransferase OS=Dictyoglomus th... [more]
GLYA_ANATD3.731e-2448.78Serine hydroxymethyltransferase OS=Anaerocellum th... [more]
GLYA_CALS86.364e-2447.15Serine hydroxymethyltransferase OS=Caldicellulosir... [more]
GLYA_DICTD8.312e-2442.07Serine hydroxymethyltransferase OS=Dictyoglomus tu... [more]
GLYA_EXIS21.086e-2350.86Serine hydroxymethyltransferase OS=Exiguobacterium... [more]
GLYA_PELTS1.418e-2345.99Serine hydroxymethyltransferase OS=Pelotomaculum t... [more]
GLYA_EUBR33.159e-2348.28Serine hydroxymethyltransferase OS=Eubacterium rec... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03A20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833115 ID=CF833115; Name=CF833115; organism=Citrus sinensis; type=EST; length=800bp
TTTTTTTTTTTTTTTTTAAGAAATAAAATACATAAATTTGTTCTTTTATT
TGTAGATGAACAATCATCATTTGACCAAAGAGAAACGGATCTCACTTTCA
CAATATGGTGGGTACCAATTAAAAAAAAAAAAAAAGTTAAAACGAAAGCG
TTTAAACCTAGGACAACAAAAGGCAAAGATGCATGCAATTTTTTTTCTTC
TCTTTCTGTTTTTCAACACTAAAGAGTTGCTAACAACACAGTAACAATAA
TGATGATACTTTGAGACCTAATCCTTGTACTTCATCTCGGACATTTTAAA
GCCGGGCATGTCAAATGAGCTGGCGAACTTCTCAACATCAGCCTTGAGGG
CCTCGATGTCCTTGTTGTTCACCAAACCCTTGTTGAAGTCCTTCAAGAGC
TTTCCATACTCCTTTTGAATTTCCAACGTGAGGGTCACAGCGCGGTGAAA
AAACTCTCCAATTTGCTCGAAGTCCTTCTCCAACAAACCTCTGGAAGTCA
TGGCAGGAGTACCGATTCTTACTCCTCCAGGGGCCAAGGCACTGCTGTCA
CCAAACACAGCATTCTTGTTCACAGTAATGTTGCAAAGGTCACAGAGCTT
CTCAACCTTATTGCCAGTCAATCCAAGAGGGCGTAAATCCCAAAAAACAA
GGTGGTTCTCAGTTCCACCAGTGACAAGGCTGTATCCCTTGCCCGTCAGG
TAGTTCCCAAGTGCAACTGCATTGGCCTTGACTTGTTTCGCATAGGCCTT
GAATGCAGGGGTCGAGGCCTGTTTCAGGGCAACAGCTAGAGCACCAATCT
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