CF833115
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYC_ASHGO (Serine hydroxymethyltransferase, cytosolic OS=Ashbya gossypii GN=SHM2 PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 8.582e-29 Identity = 72/169 (42.60%), Postives = 100/169 (59.17%), Query Frame = -3 Query: 304 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGK---LLKDFNKGLVNNKD-IEALKADVEKFASSFDMP 798 I ALA ALKQA+TP F+ Y + V NA L Y LV+ GT++H+V LR G+ G +VE +C+ NI +NKN++ GD SAL PGGVRIG PAMT+RG+ E+DF +I + +RAV + IQ+ K LKDF + D I L ++ + + +P Sbjct: 300 ISALATALKQATTPEFREYQELVLKNAKVLETEFKKLNYRLVSDGTDSHMVLVSLREKGVDGARVEHVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGMGEEDFARIVGYINRAVEIARSIQQSLPKEANRLKDFKAKVEGGTDEIAQLAQEIYSWTEEYPLP 468
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_SYMTH (Serine hydroxymethyltransferase OS=Symbiobacterium thermophilum GN=glyA PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.049e-26 Identity = 64/123 (52.03%), Postives = 79/123 (64.23%), Query Frame = -3 Query: 433 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVT 798 I A AVA KQ S P ++AY QV NA AL L +GY LVTGGT+NHL+ DLRP G+TG E L D +ITVNKNA+ D + G+RIGTPAMT+RG+ E + QI + RA+T Sbjct: 263 IAAKAVAFKQLSDPDYRAYCGQVVKNAKALAQALLERGYRLVTGGTDNHLMLVDLRPKGITGRDAEHLLDRVSITVNKNAIPNDPEKPMVTSGIRIGTPAMTTRGMKEAEMVQIADLIDRAIT 385
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_HELMI (Serine hydroxymethyltransferase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=glyA PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.789e-26 Identity = 63/119 (52.94%), Postives = 77/119 (64.71%), Query Frame = -3 Query: 445 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFH 798 I A AVA ++A PAF AY KQ+ ANA AL LT +G+ LV+GGT+NHL+ DLR LTG + EK D C ITVNKNA+ F S G+RIGTPA TSRG+ E +Q+ E H Sbjct: 266 IAAKAVAFQEAMAPAFTAYQKQIAANAAALAKGLTDRGFQLVSGGTDNHLMLVDLRNKQLTGKEAEKRLDECRITVNKNAIPFDPQSPFVTSGIRIGTPAATSRGMDEAAMDQVAEAIH 384
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_DICT6 (Serine hydroxymethyltransferase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=glyA PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.731e-24 Identity = 61/145 (42.07%), Postives = 84/145 (57.93%), Query Frame = -3 Query: 385 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVT------LTLEIQKEYGKLLKDF 798 I A AVA K+A TP FK Y KQ+ NA A+ L GY LV+GGT+NHL+ DLR G+TG + EK + ITVNKNA+ F G+RIGTPA+T+RG+ E + + H ++ + +++KE +L K F Sbjct: 263 IAAKAVAFKEAMTPEFKEYQKQIILNAKAMAEELMRLGYRLVSGGTDNHLMLVDLRDKGITGKEAEKALEEAGITVNKNAIPFDPQPPTVTSGIRIGTPALTTRGMKEDEMRYVARLIHEVLSNFKDSKVKEKVKKEVEELCKQF 407
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_ANATD (Serine hydroxymethyltransferase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=glyA PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.731e-24 Identity = 60/123 (48.78%), Postives = 78/123 (63.41%), Query Frame = -3 Query: 433 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVT 798 I A AVALK+A T FK Y Q+ NA AL L +G+ LV+GGT+NHL+ DLR G+TG EK+ D NIT NKNAV F S + G+R+GTPA+T+RG E D ++ + H A+T Sbjct: 266 IAAKAVALKEAMTEEFKNYQVQILKNAKALSTRLIERGFRLVSGGTDNHLMLVDLRNKGITGKDAEKILDEHNITCNKNAVPFDTQSPMITSGIRLGTPAVTTRGFKEGDMLEVADIIHDALT 388
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_CALS8 (Serine hydroxymethyltransferase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=glyA PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 6.364e-24 Identity = 58/123 (47.15%), Postives = 78/123 (63.41%), Query Frame = -3 Query: 433 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVT 798 I A AVALK+A T F+ Y Q+ NA AL L +G+ LV+GGT+NHL+ DLR G+TG EK D NIT NKNA+ F S + G+R+GTPA+T+RG E+D ++ + H A+T Sbjct: 268 IAAKAVALKEAMTEEFRNYQIQILKNAKALSERLIERGFRLVSGGTDNHLMLVDLRNKGITGKDAEKRLDSLNITCNKNAIPFDTQSPMVTSGIRLGTPAVTTRGFKEEDMIEVADIIHDALT 390
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_DICTD (Serine hydroxymethyltransferase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=glyA PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 8.312e-24 Identity = 61/145 (42.07%), Postives = 84/145 (57.93%), Query Frame = -3 Query: 385 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVT------LTLEIQKEYGKLLKDF 798 I A AVA K+A +P FK Y KQ+ NA A+ L GY LV+GGT+NHL+ DLR G+TG + EK + ITVNKNA+ F G+RIGTPA+T+RG+ E + I H ++ + +++KE +L K F Sbjct: 263 IAAKAVAFKEAMSPEFKEYQKQIVLNAKAMAEELIKLGYRLVSGGTDNHLMLVDLRDKGITGKEAEKALEEAGITVNKNAIPFDPQPPTITSGIRIGTPALTTRGMKEDEMRYIARLIHEVLSNFKDERVKEKVKKEVEELCKQF 407
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_EXIS2 (Serine hydroxymethyltransferase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=glyA PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.086e-23 Identity = 59/116 (50.86%), Postives = 73/116 (62.93%), Query Frame = -3 Query: 454 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGE 798 I A AVA +A P FK Y +QV ANA LG LT +G +V+GGT+NHL+ DL+PLG+TG E D ITVNKN + F +S G+RIGT AMTSRG E + +QI E Sbjct: 268 IAAKAVAFAEALAPEFKDYIEQVVANAKVLGEELTARGLRIVSGGTDNHLLLVDLQPLGITGKLAEHALDEAGITVNKNTIPFDPASPFVTSGIRIGTAAMTSRGFKEAEMKQIAE 383
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_PELTS (Serine hydroxymethyltransferase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=glyA PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.418e-23 Identity = 63/137 (45.99%), Postives = 84/137 (61.31%), Query Frame = -3 Query: 391 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLK 798 I A AVA K+A P FK Y +++ +NA AL + L +G+ LV+GGT+NHL+ DLR +TG + ++L D +TVNKNAV F G+RIGTPA+TSRGL E D QI E A+ E + + GKL K Sbjct: 268 IAAKAVAFKEAMEPGFKEYQRKIVSNARALADALLERGFELVSGGTDNHLILVDLRSKKITGREAQELFDAVGVTVNKNAVPFDPQPPNIASGIRIGTPAVTSRGLNEDDMVQIAEIMDYAI----EHRDDRGKLEK 400
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_EUBR3 (Serine hydroxymethyltransferase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=glyA PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.159e-23 Identity = 56/116 (48.28%), Postives = 71/116 (61.21%), Query Frame = -3 Query: 454 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGE 798 I A AV K+A P FK Y KQ+ NA AL L +G +V+ GT+NHL+ DL P GLTG +EKL D +IT NKN + D G+R+GTPA TSRGL E DF+++ E Sbjct: 267 IAAKAVCFKEALQPEFKEYQKQIVKNAQALCKGLQSRGIKIVSDGTDNHLMLVDLTPFGLTGKSIEKLLDAAHITANKNTIPNDPQKPFVTSGIRLGTPAATSRGLKEDDFDKVAE 382 The following BLAST results are available for this feature:
BLAST of CF833115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF833115 ID=CF833115; Name=CF833115; organism=Citrus sinensis; type=EST; length=800bpback to top |