CF833115
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_ALKOO (Serine hydroxymethyltransferase OS=Alkaliphilus oremlandii (strain OhILAs) GN=glyA PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 4.125e-23 Identity = 56/116 (48.28%), Postives = 74/116 (63.79%), Query Frame = -3 Query: 454 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGE 798 I A AV+ K+A +P FKAY +QV NA LG L +G++LV+GGT+NHL+ DLR +TG EKL D +TVNKN + + S G+RIGTPA+T+RG+ E D I E Sbjct: 265 IAAKAVSFKEALSPEFKAYQEQVIKNAAKLGEELKSRGFNLVSGGTDNHLLLLDLRNKNITGKDAEKLLDEVGVTVNKNTIPYDPESPFVTSGIRIGTPAVTTRGMKEDDMVTIAE 380
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_SYNAS (Serine hydroxymethyltransferase OS=Syntrophus aciditrophicus (strain SB) GN=glyA PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 7.037e-23 Identity = 59/145 (40.69%), Postives = 83/145 (57.24%), Query Frame = -3 Query: 385 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAV------TLTLEIQKEYGKLLKDF 798 I A AVA K+A T FK Y Q+ NA AL L G+GY LV+GGT+NHL+ DL GLTG + ++ D ITVNKN + F + G+RIGTPA+TSRG+ E++ I + + +++E G+L ++F Sbjct: 263 IAAKAVAFKEALTDEFKDYQSQIVKNAQALAKELIGRGYRLVSGGTDNHLLLMDLTDKGLTGKEAQESLDSAGITVNKNGIPFDTRGPMVTSGIRIGTPALTSRGMKEEEMRTIARLIAEVLEHRDNEKHLMAVKEEVGRLCQNF 407
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_DEIGD (Serine hydroxymethyltransferase OS=Deinococcus geothermalis (strain DSM 11300) GN=glyA PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 7.037e-23 Identity = 65/166 (39.16%), Postives = 89/166 (53.61%), Query Frame = -3 Query: 304 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMP 798 I A AVA +A P FK YA Q+ NA AL +GY +V+GGT+NHL DLRP GL G K + D +IT++K+ + + L GG+RIGTPA+T+RG+ E D E++ + RA+ KG E +KA+V FA SF +P Sbjct: 272 IAAKAVAFGEALQPEFKDYAAQIIRNAQALAGAFQNRGYRVVSGGTDNHLFVLDLRPQGLNGTKATRRLDANDITISKSTLPYDTEKILHGGGIRIGTPAITTRGMKEADMERVADLIDRAL------------------KG-------EDVKAEVHAFAGSFPLP 412
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_CARHZ (Serine hydroxymethyltransferase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=glyA PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 7.037e-23 Identity = 56/116 (48.28%), Postives = 77/116 (66.38%), Query Frame = -3 Query: 454 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGE 798 I A AVA K+A +P F+ Y +QV NA AL L +G LV+GGT+NHL+ D+RP+GLTG + E+L D +TVNKNA+ + S G+RIGTPA+T+RG+ E + +I E Sbjct: 267 IAAKAVAFKEALSPEFREYQQQVVNNAKALAEELKKQGLRLVSGGTDNHLMLVDVRPVGLTGKRAEQLLDEIGVTVNKNAIPYDPESPNVTSGIRIGTPAVTTRGMKEGEMAEIAE 382
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_SYNFM (Serine hydroxymethyltransferase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=glyA PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.200e-22 Identity = 61/165 (36.97%), Postives = 88/165 (53.33%), Query Frame = -3 Query: 307 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDM 798 I A AVA ++A P+FK Y ++V A+A AL L GY LV+GGT+NHL+ DL P G+TG E+ D ITVNKN++ F G+RIGTPA+ +RG+L + + F HR + K + + L+A+V +F S+F + Sbjct: 263 IAAKAVAFREALQPSFKEYQQRVVADAAALAQELKALGYRLVSGGTDNHLMLVDLTPQGVTGRVAEETLDKAGITVNKNSIPFDQQKPQVTSGIRIGTPALATRGILPHHMKAVAGFMHRGL------------------KSAGDEPALARLRAEVAEFCSAFPL 409
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_DESRM (Serine hydroxymethyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=glyA PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.200e-22 Identity = 57/127 (44.88%), Postives = 79/127 (62.20%), Query Frame = -3 Query: 421 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLE 798 I A A A +A P FKAY +Q+ NA AL L +G++LV+GGT+NHL+ DLR G+TG + E L D +IT NKNA+ F G+R+GTPA+T+RG EKD +++ E + LTL+ Sbjct: 265 IAAKAAAFGEALKPEFKAYQQQIINNAQALAKGLLERGFNLVSGGTDNHLILVDLRGTGITGKQAETLLDEVHITCNKNAIPFDPEKPFVTSGIRLGTPAVTTRGFKEKDMDKVAEI----IALTLQ 387
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_CYAA5 (Serine hydroxymethyltransferase OS=Cyanothece sp. (strain ATCC 51142) GN=glyA PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.200e-22 Identity = 57/115 (49.57%), Postives = 75/115 (65.22%), Query Frame = -3 Query: 457 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG 798 I A AVA +A P FK Y+ QV ANA AL N L +G+ LV+GGT+NHL+ DLR + +TG + +KL NIT NKN V F S G+R+G+PAMT+RGL ++F +IG Sbjct: 269 IAAKAVAFGEALKPEFKVYSGQVIANAQALANQLNQRGFKLVSGGTDNHLMLVDLRCIDMTGKEADKLVSEINITANKNTVPFDPESPFVTSGLRLGSPAMTTRGLGVEEFREIG 383
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_BACSK (Serine hydroxymethyltransferase OS=Bacillus clausii (strain KSM-K16) GN=glyA PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 2.047e-22 Identity = 65/165 (39.39%), Postives = 88/165 (53.33%), Query Frame = -3 Query: 307 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDM 798 I A AVA +A + FK YAKQ+ ANA LG L +G +V+GGT+NHL+ DLR L LTG EK D IT NKNA+ F G+RIGT A+TSRG E + ++IGE + LTL K + N + + ++++ V +F M Sbjct: 267 IAAKAVAFGEALSDEFKTYAKQIIANAKRLGEKLQAEGVDIVSGGTDNHLLLLDLRSLQLTGKVAEKALDAVGITTNKNAIPFDPEKPFVTSGIRIGTAAVTSRGFGENEMDEIGEL----IALTL--------------KNIDNEEALNSVRSRVAALTKTFPM 413
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_RICRS (Serine hydroxymethyltransferase OS=Rickettsia rickettsii (strain Sheila Smith) GN=glyA PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.674e-22 Identity = 62/156 (39.74%), Postives = 85/156 (54.49%), Query Frame = -3 Query: 334 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADV 798 I A AVA + P +K+Y +QV +NA AL + L +GY ++TGGT+NH+V DLR G+TG D IT NKNA+ F ++S G+R+GTPA T+RG EKDF +G ++ D GL NN+D AL+ V Sbjct: 268 IAAKAVAFLENLQPEYKSYIQQVISNAKALASSLQERGYDILTGGTDNHIVLVDLRKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGH------------------MVADILDGLKNNEDNSALEQQV 405
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_RICRO (Serine hydroxymethyltransferase OS=Rickettsia rickettsii (strain Iowa) GN=glyA PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.674e-22 Identity = 62/156 (39.74%), Postives = 85/156 (54.49%), Query Frame = -3 Query: 334 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADV 798 I A AVA + P +K+Y +QV +NA AL + L +GY ++TGGT+NH+V DLR G+TG D IT NKNA+ F ++S G+R+GTPA T+RG EKDF +G ++ D GL NN+D AL+ V Sbjct: 268 IAAKAVAFLENLQPEYKSYIQQVISNAKALASSLQERGYDILTGGTDNHIVLVDLRKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGH------------------MVADILDGLKNNEDNSALEQQV 405 The following BLAST results are available for this feature:
BLAST of CF833115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF833115 ID=CF833115; Name=CF833115; organism=Citrus sinensis; type=EST; length=800bpback to top |