CF833115

Overview
NameCF833115
Unique NameCF833115
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_ALKOO (Serine hydroxymethyltransferase OS=Alkaliphilus oremlandii (strain OhILAs) GN=glyA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.125e-23
Identity = 56/116 (48.28%), Postives = 74/116 (63.79%), Query Frame = -3
Query:  454 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGE 798
            I A AV+ K+A +P FKAY +QV  NA  LG  L  +G++LV+GGT+NHL+  DLR   +TG   EKL D   +TVNKN + +   S     G+RIGTPA+T+RG+ E D   I E
Sbjct:  265 IAAKAVSFKEALSPEFKAYQEQVIKNAAKLGEELKSRGFNLVSGGTDNHLLLLDLRNKNITGKDAEKLLDEVGVTVNKNTIPYDPESPFVTSGIRIGTPAVTTRGMKEDDMVTIAE 380          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_SYNAS (Serine hydroxymethyltransferase OS=Syntrophus aciditrophicus (strain SB) GN=glyA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.037e-23
Identity = 59/145 (40.69%), Postives = 83/145 (57.24%), Query Frame = -3
Query:  385 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAV------TLTLEIQKEYGKLLKDF 798
            I A AVA K+A T  FK Y  Q+  NA AL   L G+GY LV+GGT+NHL+  DL   GLTG + ++  D   ITVNKN + F     +   G+RIGTPA+TSRG+ E++   I       +         + +++E G+L ++F
Sbjct:  263 IAAKAVAFKEALTDEFKDYQSQIVKNAQALAKELIGRGYRLVSGGTDNHLLLMDLTDKGLTGKEAQESLDSAGITVNKNGIPFDTRGPMVTSGIRIGTPALTSRGMKEEEMRTIARLIAEVLEHRDNEKHLMAVKEEVGRLCQNF 407          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_DEIGD (Serine hydroxymethyltransferase OS=Deinococcus geothermalis (strain DSM 11300) GN=glyA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.037e-23
Identity = 65/166 (39.16%), Postives = 89/166 (53.61%), Query Frame = -3
Query:  304 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMP 798
            I A AVA  +A  P FK YA Q+  NA AL      +GY +V+GGT+NHL   DLRP GL G K  +  D  +IT++K+ + +     L  GG+RIGTPA+T+RG+ E D E++ +   RA+                  KG       E +KA+V  FA SF +P
Sbjct:  272 IAAKAVAFGEALQPEFKDYAAQIIRNAQALAGAFQNRGYRVVSGGTDNHLFVLDLRPQGLNGTKATRRLDANDITISKSTLPYDTEKILHGGGIRIGTPAITTRGMKEADMERVADLIDRAL------------------KG-------EDVKAEVHAFAGSFPLP 412          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_CARHZ (Serine hydroxymethyltransferase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=glyA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.037e-23
Identity = 56/116 (48.28%), Postives = 77/116 (66.38%), Query Frame = -3
Query:  454 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGE 798
            I A AVA K+A +P F+ Y +QV  NA AL   L  +G  LV+GGT+NHL+  D+RP+GLTG + E+L D   +TVNKNA+ +   S     G+RIGTPA+T+RG+ E +  +I E
Sbjct:  267 IAAKAVAFKEALSPEFREYQQQVVNNAKALAEELKKQGLRLVSGGTDNHLMLVDVRPVGLTGKRAEQLLDEIGVTVNKNAIPYDPESPNVTSGIRIGTPAVTTRGMKEGEMAEIAE 382          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_SYNFM (Serine hydroxymethyltransferase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=glyA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.200e-22
Identity = 61/165 (36.97%), Postives = 88/165 (53.33%), Query Frame = -3
Query:  307 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDM 798
            I A AVA ++A  P+FK Y ++V A+A AL   L   GY LV+GGT+NHL+  DL P G+TG   E+  D   ITVNKN++ F         G+RIGTPA+ +RG+L    + +  F HR +                  K   +   +  L+A+V +F S+F +
Sbjct:  263 IAAKAVAFREALQPSFKEYQQRVVADAAALAQELKALGYRLVSGGTDNHLMLVDLTPQGVTGRVAEETLDKAGITVNKNSIPFDQQKPQVTSGIRIGTPALATRGILPHHMKAVAGFMHRGL------------------KSAGDEPALARLRAEVAEFCSAFPL 409          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_DESRM (Serine hydroxymethyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.200e-22
Identity = 57/127 (44.88%), Postives = 79/127 (62.20%), Query Frame = -3
Query:  421 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLE 798
            I A A A  +A  P FKAY +Q+  NA AL   L  +G++LV+GGT+NHL+  DLR  G+TG + E L D  +IT NKNA+ F         G+R+GTPA+T+RG  EKD +++ E     + LTL+
Sbjct:  265 IAAKAAAFGEALKPEFKAYQQQIINNAQALAKGLLERGFNLVSGGTDNHLILVDLRGTGITGKQAETLLDEVHITCNKNAIPFDPEKPFVTSGIRLGTPAVTTRGFKEKDMDKVAEI----IALTLQ 387          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_CYAA5 (Serine hydroxymethyltransferase OS=Cyanothece sp. (strain ATCC 51142) GN=glyA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.200e-22
Identity = 57/115 (49.57%), Postives = 75/115 (65.22%), Query Frame = -3
Query:  457 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG 798
            I A AVA  +A  P FK Y+ QV ANA AL N L  +G+ LV+GGT+NHL+  DLR + +TG + +KL    NIT NKN V F   S     G+R+G+PAMT+RGL  ++F +IG
Sbjct:  269 IAAKAVAFGEALKPEFKVYSGQVIANAQALANQLNQRGFKLVSGGTDNHLMLVDLRCIDMTGKEADKLVSEINITANKNTVPFDPESPFVTSGLRLGSPAMTTRGLGVEEFREIG 383          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_BACSK (Serine hydroxymethyltransferase OS=Bacillus clausii (strain KSM-K16) GN=glyA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.047e-22
Identity = 65/165 (39.39%), Postives = 88/165 (53.33%), Query Frame = -3
Query:  307 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDM 798
            I A AVA  +A +  FK YAKQ+ ANA  LG  L  +G  +V+GGT+NHL+  DLR L LTG   EK  D   IT NKNA+ F         G+RIGT A+TSRG  E + ++IGE     + LTL              K + N + + ++++ V     +F M
Sbjct:  267 IAAKAVAFGEALSDEFKTYAKQIIANAKRLGEKLQAEGVDIVSGGTDNHLLLLDLRSLQLTGKVAEKALDAVGITTNKNAIPFDPEKPFVTSGIRIGTAAVTSRGFGENEMDEIGEL----IALTL--------------KNIDNEEALNSVRSRVAALTKTFPM 413          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_RICRS (Serine hydroxymethyltransferase OS=Rickettsia rickettsii (strain Sheila Smith) GN=glyA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.674e-22
Identity = 62/156 (39.74%), Postives = 85/156 (54.49%), Query Frame = -3
Query:  334 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADV 798
            I A AVA  +   P +K+Y +QV +NA AL + L  +GY ++TGGT+NH+V  DLR  G+TG       D   IT NKNA+ F ++S     G+R+GTPA T+RG  EKDF  +G                   ++ D   GL NN+D  AL+  V
Sbjct:  268 IAAKAVAFLENLQPEYKSYIQQVISNAKALASSLQERGYDILTGGTDNHIVLVDLRKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGH------------------MVADILDGLKNNEDNSALEQQV 405          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_RICRO (Serine hydroxymethyltransferase OS=Rickettsia rickettsii (strain Iowa) GN=glyA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.674e-22
Identity = 62/156 (39.74%), Postives = 85/156 (54.49%), Query Frame = -3
Query:  334 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADV 798
            I A AVA  +   P +K+Y +QV +NA AL + L  +GY ++TGGT+NH+V  DLR  G+TG       D   IT NKNA+ F ++S     G+R+GTPA T+RG  EKDF  +G                   ++ D   GL NN+D  AL+  V
Sbjct:  268 IAAKAVAFLENLQPEYKSYIQQVISNAKALASSLQERGYDILTGGTDNHIVLVDLRKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGH------------------MVADILDGLKNNEDNSALEQQV 405          
The following BLAST results are available for this feature:
BLAST of CF833115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_ALKOO4.125e-2348.28Serine hydroxymethyltransferase OS=Alkaliphilus or... [more]
GLYA_SYNAS7.037e-2340.69Serine hydroxymethyltransferase OS=Syntrophus acid... [more]
GLYA_DEIGD7.037e-2339.16Serine hydroxymethyltransferase OS=Deinococcus geo... [more]
GLYA_CARHZ7.037e-2348.28Serine hydroxymethyltransferase OS=Carboxydothermu... [more]
GLYA_SYNFM1.200e-2236.97Serine hydroxymethyltransferase OS=Syntrophobacter... [more]
GLYA_DESRM1.200e-2244.88Serine hydroxymethyltransferase OS=Desulfotomaculu... [more]
GLYA_CYAA51.200e-2249.57Serine hydroxymethyltransferase OS=Cyanothece sp. ... [more]
GLYA_BACSK2.047e-2239.39Serine hydroxymethyltransferase OS=Bacillus clausi... [more]
GLYA_RICRS2.674e-2239.74Serine hydroxymethyltransferase OS=Rickettsia rick... [more]
GLYA_RICRO2.674e-2239.74Serine hydroxymethyltransferase OS=Rickettsia rick... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03A20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833115 ID=CF833115; Name=CF833115; organism=Citrus sinensis; type=EST; length=800bp
TTTTTTTTTTTTTTTTTAAGAAATAAAATACATAAATTTGTTCTTTTATT
TGTAGATGAACAATCATCATTTGACCAAAGAGAAACGGATCTCACTTTCA
CAATATGGTGGGTACCAATTAAAAAAAAAAAAAAAGTTAAAACGAAAGCG
TTTAAACCTAGGACAACAAAAGGCAAAGATGCATGCAATTTTTTTTCTTC
TCTTTCTGTTTTTCAACACTAAAGAGTTGCTAACAACACAGTAACAATAA
TGATGATACTTTGAGACCTAATCCTTGTACTTCATCTCGGACATTTTAAA
GCCGGGCATGTCAAATGAGCTGGCGAACTTCTCAACATCAGCCTTGAGGG
CCTCGATGTCCTTGTTGTTCACCAAACCCTTGTTGAAGTCCTTCAAGAGC
TTTCCATACTCCTTTTGAATTTCCAACGTGAGGGTCACAGCGCGGTGAAA
AAACTCTCCAATTTGCTCGAAGTCCTTCTCCAACAAACCTCTGGAAGTCA
TGGCAGGAGTACCGATTCTTACTCCTCCAGGGGCCAAGGCACTGCTGTCA
CCAAACACAGCATTCTTGTTCACAGTAATGTTGCAAAGGTCACAGAGCTT
CTCAACCTTATTGCCAGTCAATCCAAGAGGGCGTAAATCCCAAAAAACAA
GGTGGTTCTCAGTTCCACCAGTGACAAGGCTGTATCCCTTGCCCGTCAGG
TAGTTCCCAAGTGCAACTGCATTGGCCTTGACTTGTTTCGCATAGGCCTT
GAATGCAGGGGTCGAGGCCTGTTTCAGGGCAACAGCTAGAGCACCAATCT
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