CF833115

Overview
NameCF833115
Unique NameCF833115
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_HALMA (Serine hydroxymethyltransferase OS=Haloarcula marismortui GN=glyA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.343e-18
Identity = 51/124 (41.13%), Postives = 72/124 (58.06%), Query Frame = -3
Query:  436 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPL--GLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAV 798
            +   AV   +A  P F+ YA+Q   NA+ALG      G SLV+GGT+NHLV  DLRP     TG +VE+  +   I +N N V G++ SA  P G+R GTPA+T+RG  E    ++ +  ++ V
Sbjct:  265 VAGKAVGFGEALAPEFEQYAQQTVDNAIALGEQFKEHGLSLVSGGTDNHLVLIDLRPSHPDTTGKEVEEALEEAGIVLNANTVPGETRSAFNPSGIRAGTPALTTRGFDEDACREVADLIYKVV 388          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_ECO5E (Serine hydroxymethyltransferase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=glyA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.343e-18
Identity = 50/114 (43.86%), Postives = 67/114 (58.77%), Query Frame = -3
Query:  460 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQI 798
            I   AVALK+A  P FK Y +QV  NA A+      +GY +V+GGT+NHL   DL    LTG + +      NITVNKN+V  D  S     G+R+GTPA+T RG  E + +++
Sbjct:  269 IAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEVEAKEL 382          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_ECO57 (Serine hydroxymethyltransferase OS=Escherichia coli O157:H7 GN=glyA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.343e-18
Identity = 50/114 (43.86%), Postives = 67/114 (58.77%), Query Frame = -3
Query:  460 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQI 798
            I   AVALK+A  P FK Y +QV  NA A+      +GY +V+GGT+NHL   DL    LTG + +      NITVNKN+V  D  S     G+R+GTPA+T RG  E + +++
Sbjct:  269 IAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEVEAKEL 382          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_CYAP4 (Serine hydroxymethyltransferase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=glyA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.343e-18
Identity = 50/114 (43.86%), Postives = 69/114 (60.53%), Query Frame = -3
Query:  460 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQI 798
            I A AVA  +A  P FK Y+ QV  NA AL   L  +G+ +V+ GT+NHL+  DLR +G+TG   ++L    NIT NKN V F   S     G+R+G+ AMT+RG+   +F +I
Sbjct:  269 IAAKAVAFGEALRPEFKTYSAQVIKNAQALSQQLQQRGFKIVSNGTDNHLLLVDLRSIGMTGKLADQLVSEVNITANKNTVPFDPESPFVTSGLRLGSAAMTTRGMGTPEFIEI 382          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_XYLFT (Serine hydroxymethyltransferase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=glyA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.059e-18
Identity = 52/110 (47.27%), Postives = 68/110 (61.82%), Query Frame = -3
Query:  472 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKD 798
            I A AVA K+A  PAFK Y +QV  NA A+   L  +GY +V+GGTENHL+  D+    ++G   E      +ITVNKNAV  D  S     G+R+GTPA+T+RG  E+D
Sbjct:  269 IAAKAVAFKEALEPAFKVYQQQVVKNAKAMAGTLMLRGYKIVSGGTENHLMLVDMIGRDVSGKDAEGALGQVHITVNKNAVPDDPRSPFVTSGLRLGTPAVTTRGYQEQD 378          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_XYLF2 (Serine hydroxymethyltransferase OS=Xylella fastidiosa (strain M23) GN=glyA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.059e-18
Identity = 52/110 (47.27%), Postives = 68/110 (61.82%), Query Frame = -3
Query:  472 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKD 798
            I A AVA K+A  PAFK Y +QV  NA A+   L  +GY +V+GGTENHL+  D+    ++G   E      +ITVNKNAV  D  S     G+R+GTPA+T+RG  E+D
Sbjct:  269 IAAKAVAFKEALEPAFKVYQQQVVKNAKAMAGTLMLRGYKIVSGGTENHLMLVDMIGRDVSGKDAEGALGQVHITVNKNAVPDDPRSPFVTSGLRLGTPAVTTRGYQEQD 378          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_WOLWR (Serine hydroxymethyltransferase OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=glyA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.059e-18
Identity = 61/166 (36.75%), Postives = 88/166 (53.01%), Query Frame = -3
Query:  313 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLV--NNKDIE-ALKADVEKFASSF 798
            I A AVA K+A  P FK Y+K+V  NA  L   L   G  ++TGGT++H+V  DLR   LTG  V    +   IT NKN+V F  +      G+R GT A T+RGL  ++F++I +                  L+ +  +GL+  N+  +E A+KA VE+  S+F
Sbjct:  275 IAAKAVAFKEALAPEFKTYSKKVVENAKVLAQELQKHGLDIITGGTDSHIVLVDLRSQKLTGKDVVDSLERAGITCNKNSVPFDTAKPTITSGLRFGTAAETTRGLEAENFKEIAD------------------LINEVIQGLISGNSSSVEKAVKAKVERICSNF 422          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_THERP (Serine hydroxymethyltransferase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=glyA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.059e-18
Identity = 49/105 (46.67%), Postives = 65/105 (61.90%), Query Frame = -3
Query:  487 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRG 798
            I   AVAL +A  P F+ Y ++V  NA  L   L  +G+ LV+GGT+NHL+  DLR  GL+G K E++ D   ITVNKN +  D        G+R+GTPAMT+RG
Sbjct:  264 IAGKAVALGEALRPTFRTYIERVLENARVLAETLQAEGFRLVSGGTDNHLLLVDLRSHGLSGRKAERVLDEVGITVNKNTIPNDPKPPTQASGIRLGTPAMTTRG 368          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_PROM0 (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain MIT 9301) GN=glyA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.059e-18
Identity = 50/116 (43.10%), Postives = 68/116 (58.62%), Query Frame = -3
Query:  454 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGE 798
            I A AVA  +A  P F  Y++QV  NA  L + L  +G  +V+GGT+NH+V  DLR + +TG   + L    NIT NKN V F   S     G+R+GT A+T+RG  E  F ++GE
Sbjct:  267 IAAKAVAFGEALQPDFVNYSQQVIKNAKVLASTLINRGIDIVSGGTDNHIVLLDLRSINMTGKIADLLVSEVNITANKNTVPFDPESPFVTSGLRLGTAALTTRGFNENAFAEVGE 382          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_PELUB (Serine hydroxymethyltransferase OS=Pelagibacter ubique GN=glyA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.059e-18
Identity = 50/145 (34.48%), Postives = 75/145 (51.72%), Query Frame = -3
Query:  367 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVN 798
            I   A    +A  P FK Y K V ANA  L   L   G+ + +GGT+ HL+  DLRP  + GN   +     NIT NKN + F     +   G+R+GT A T+RG   K+FE++GE   + V    E  ++ GK+ ++    +++
Sbjct:  280 IAGKAAGFLEALRPDFKDYIKSVLANAKILSETLKNNGFKIYSGGTDTHLMLVDLRPFNVKGNAAAESLSNANITCNKNGIPFDSEKPMITSGIRLGTQAATTRGFGLKEFEKVGELITKVVKGLSENPEDNGKIEEEVRNEVID 424          
The following BLAST results are available for this feature:
BLAST of CF833115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_HALMA2.343e-1841.13Serine hydroxymethyltransferase OS=Haloarcula mari... [more]
GLYA_ECO5E2.343e-1843.86Serine hydroxymethyltransferase OS=Escherichia col... [more]
GLYA_ECO572.343e-1843.86Serine hydroxymethyltransferase OS=Escherichia col... [more]
GLYA_CYAP42.343e-1843.86Serine hydroxymethyltransferase OS=Cyanothece sp. ... [more]
GLYA_XYLFT3.059e-1847.27Serine hydroxymethyltransferase OS=Xylella fastidi... [more]
GLYA_XYLF23.059e-1847.27Serine hydroxymethyltransferase OS=Xylella fastidi... [more]
GLYA_WOLWR3.059e-1836.75Serine hydroxymethyltransferase OS=Wolbachia sp. s... [more]
GLYA_THERP3.059e-1846.67Serine hydroxymethyltransferase OS=Thermomicrobium... [more]
GLYA_PROM03.059e-1843.10Serine hydroxymethyltransferase OS=Prochlorococcus... [more]
GLYA_PELUB3.059e-1834.48Serine hydroxymethyltransferase OS=Pelagibacter ub... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03A20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833115 ID=CF833115; Name=CF833115; organism=Citrus sinensis; type=EST; length=800bp
TTTTTTTTTTTTTTTTTAAGAAATAAAATACATAAATTTGTTCTTTTATT
TGTAGATGAACAATCATCATTTGACCAAAGAGAAACGGATCTCACTTTCA
CAATATGGTGGGTACCAATTAAAAAAAAAAAAAAAGTTAAAACGAAAGCG
TTTAAACCTAGGACAACAAAAGGCAAAGATGCATGCAATTTTTTTTCTTC
TCTTTCTGTTTTTCAACACTAAAGAGTTGCTAACAACACAGTAACAATAA
TGATGATACTTTGAGACCTAATCCTTGTACTTCATCTCGGACATTTTAAA
GCCGGGCATGTCAAATGAGCTGGCGAACTTCTCAACATCAGCCTTGAGGG
CCTCGATGTCCTTGTTGTTCACCAAACCCTTGTTGAAGTCCTTCAAGAGC
TTTCCATACTCCTTTTGAATTTCCAACGTGAGGGTCACAGCGCGGTGAAA
AAACTCTCCAATTTGCTCGAAGTCCTTCTCCAACAAACCTCTGGAAGTCA
TGGCAGGAGTACCGATTCTTACTCCTCCAGGGGCCAAGGCACTGCTGTCA
CCAAACACAGCATTCTTGTTCACAGTAATGTTGCAAAGGTCACAGAGCTT
CTCAACCTTATTGCCAGTCAATCCAAGAGGGCGTAAATCCCAAAAAACAA
GGTGGTTCTCAGTTCCACCAGTGACAAGGCTGTATCCCTTGCCCGTCAGG
TAGTTCCCAAGTGCAACTGCATTGGCCTTGACTTGTTTCGCATAGGCCTT
GAATGCAGGGGTCGAGGCCTGTTTCAGGGCAACAGCTAGAGCACCAATCT
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