CF833115

Overview
NameCF833115
Unique NameCF833115
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_FRAT1 (Serine hydroxymethyltransferase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=glyA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.996e-18
Identity = 49/114 (42.98%), Postives = 69/114 (60.53%), Query Frame = -3
Query:  460 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQI 798
            I A AVA K+A  P+F  Y KQV  NA A+   L  +G ++++GGT NHL+  D+   G +G + E      NITVNKN++  D  S     G+RIG+PA+T+RG  EK+ E +
Sbjct:  269 IAAKAVAFKEALEPSFVDYQKQVLKNAKAMEKVLKQRGINIISGGTSNHLLLLDITNTGFSGKEAEAALGRANITVNKNSIPNDPRSPFVTSGLRIGSPAITTRGFKEKECELV 382          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_EDWI9 (Serine hydroxymethyltransferase OS=Edwardsiella ictaluri (strain 93-146) GN=glyA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.996e-18
Identity = 51/114 (44.74%), Postives = 67/114 (58.77%), Query Frame = -3
Query:  460 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQI 798
            I A AVALK+A  P F  Y +QV  NA A+ +    +GY +V+GGTENHL   DL    +TG + +      NITVNKN+V  D  S     G+RIGTPA+T RG  E +  ++
Sbjct:  269 IAAKAVALKEAMEPEFTRYQQQVAKNAKAMVDVFLQRGYKVVSGGTENHLFLLDLVDRQITGKEADAALGHANITVNKNSVPNDPQSPFVTSGIRIGTPAITRRGFKEAESREL 382          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_WOLPM (Serine hydroxymethyltransferase OS=Wolbachia pipientis wMel GN=glyA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.219e-18
Identity = 62/166 (37.35%), Postives = 86/166 (51.81%), Query Frame = -3
Query:  313 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLV--NNKDIE-ALKADVEKFASSF 798
            I A AVA K+A  P FK Y+K+V  NA  L   L   G  ++TGGT++H+V  DLR   LTG  V    +   IT NKN+V F  +      G+R GT A T+RGL  ++F                  KE   L+ +  +GL+  N+  +E A+KA VE+  S+F
Sbjct:  275 IAAKAVAFKEALAPEFKTYSKKVVENAKVLAQELQKHGLDIITGGTDSHIVLVDLRSQKLTGKDVVDSLERAGITCNKNSVPFDTAKPTITSGLRFGTAAETTRGLEAENF------------------KEIAGLINEVIQGLISGNSSSVEKAVKAKVERICSNF 422          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_SHEPC (Serine hydroxymethyltransferase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=glyA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.219e-18
Identity = 52/114 (45.61%), Postives = 66/114 (57.89%), Query Frame = -3
Query:  460 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQI 798
            I   AVA K+A  P FK Y +QV  NA A+      +GY +V+GGT NHL+  DL    LTG + +      NITVNKN+V  D  S     GVRIGTPA+T RG  E + +Q+
Sbjct:  269 IAGKAVAFKEALEPEFKVYQQQVVNNAKAMVEVFLERGYKIVSGGTSNHLMLVDLIGRDLTGKEADAALGSANITVNKNSVPNDPRSPFVTSGVRIGTPAITRRGFKEAEAKQL 382          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_SHEON (Serine hydroxymethyltransferase OS=Shewanella oneidensis GN=glyA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.219e-18
Identity = 52/114 (45.61%), Postives = 66/114 (57.89%), Query Frame = -3
Query:  460 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQI 798
            I   AVA K+A  P FK Y +QV  NA A+      +GY +V+GGT NHL+  DL    LTG + +      NITVNKN+V  D  S     GVRIGTPA+T RG  E + +Q+
Sbjct:  269 IAGKAVAFKEALEPEFKTYQQQVVNNAKAMVEVFLERGYKIVSGGTSNHLMLVDLIGRDLTGKEADAALGSANITVNKNSVPNDPRSPFVTSGVRIGTPAITRRGFKEAEAKQL 382          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_SHEFN (Serine hydroxymethyltransferase OS=Shewanella frigidimarina (strain NCIMB 400) GN=glyA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.219e-18
Identity = 50/114 (43.86%), Postives = 67/114 (58.77%), Query Frame = -3
Query:  460 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQI 798
            I   AVA K+A  P FK Y +QV  NA A+      +GY +V+GGTENHL+  DL    LTG + +      NITVNKN+V  D  S     G+RIG+PA+T RG  E + +++
Sbjct:  269 IAGKAVAFKEALEPEFKVYQQQVVKNAKAMVEVFLARGYKIVSGGTENHLMLVDLIGRDLTGKEADAALGSANITVNKNSVPNDPRSPFVTSGIRIGSPAITRRGFKEAEAKEL 382          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_RALPJ (Serine hydroxymethyltransferase OS=Ralstonia pickettii (strain 12J) GN=glyA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.219e-18
Identity = 49/110 (44.55%), Postives = 68/110 (61.82%), Query Frame = -3
Query:  472 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKD 798
            I   AVA K+A +P FKAY +QV  NA A+   L  +G  +V+G TE+H++  DLR   +TG + EK+    +ITVNKNA+  D        GVR+G+PAMT+RG  E +
Sbjct:  267 IAGKAVAFKEALSPEFKAYQEQVVKNAAAMAETLMARGLRIVSGRTESHVMLVDLRAKKITGKEAEKVLGDAHITVNKNAIPNDPEKPFVTSGVRLGSPAMTTRGFKEAE 376          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_PROMH (Serine hydroxymethyltransferase OS=Proteus mirabilis (strain HI4320) GN=glyA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.219e-18
Identity = 50/114 (43.86%), Postives = 66/114 (57.89%), Query Frame = -3
Query:  460 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQI 798
            I   AVALK+A  P FK Y +QV  NA A+ +    +GY +V+GGTENHL   DL    +TG   +      NITVNKN+V  D  S     G+RIG+PA+T RG  E + + +
Sbjct:  269 IAGKAVALKEAMEPEFKVYQQQVAKNAKAMVDVFLARGYKVVSGGTENHLFLLDLVDKDITGKDADAALGRANITVNKNSVPNDPRSPFVTSGIRIGSPAITRRGFKEAEAKDL 382          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_HAES2 (Serine hydroxymethyltransferase OS=Haemophilus somnus (strain 2336) GN=glyA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.219e-18
Identity = 51/114 (44.74%), Postives = 64/114 (56.14%), Query Frame = -3
Query:  460 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQI 798
            I A AV  K+A  P FK Y  QV  NA A+      +GY++V+ GTENHL   DL   GLTG   +      NITVNKNAV  D        G+R+GTPA+T RG  E+D  ++
Sbjct:  268 IAAKAVCFKEALEPEFKTYQAQVVKNAKAMVKVFKQRGYNVVSNGTENHLFLVDLVNHGLTGKAADAALSRANITVNKNAVPNDPQKPFVTSGIRVGTPAVTRRGFNEEDVAEL 381          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_BARQU (Serine hydroxymethyltransferase OS=Bartonella quintana GN=glyA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.219e-18
Identity = 49/115 (42.61%), Postives = 68/115 (59.13%), Query Frame = -3
Query:  457 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG 798
            I A AVA ++A  PAFK Y+  V  NA  L   L   G+ +V+GGT+NHL+  DL    +TG + E      +IT NKNA+ F   +     G+R+G+PA T+RGL E +F Q+G
Sbjct:  277 IAAKAVAFEEALQPAFKNYSANVVVNAKTLAKTLQSNGFDIVSGGTDNHLLLVDLCSKKVTGKRAELALGRAHITCNKNAIPFDLQAPSVTSGIRLGSPAATTRGLAENEFVQVG 391          
The following BLAST results are available for this feature:
BLAST of CF833115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_FRAT13.996e-1842.98Serine hydroxymethyltransferase OS=Francisella tul... [more]
GLYA_EDWI93.996e-1844.74Serine hydroxymethyltransferase OS=Edwardsiella ic... [more]
GLYA_WOLPM5.219e-1837.35Serine hydroxymethyltransferase OS=Wolbachia pipie... [more]
GLYA_SHEPC5.219e-1845.61Serine hydroxymethyltransferase OS=Shewanella putr... [more]
GLYA_SHEON5.219e-1845.61Serine hydroxymethyltransferase OS=Shewanella onei... [more]
GLYA_SHEFN5.219e-1843.86Serine hydroxymethyltransferase OS=Shewanella frig... [more]
GLYA_RALPJ5.219e-1844.55Serine hydroxymethyltransferase OS=Ralstonia picke... [more]
GLYA_PROMH5.219e-1843.86Serine hydroxymethyltransferase OS=Proteus mirabil... [more]
GLYA_HAES25.219e-1844.74Serine hydroxymethyltransferase OS=Haemophilus som... [more]
GLYA_BARQU5.219e-1842.61Serine hydroxymethyltransferase OS=Bartonella quin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03A20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833115 ID=CF833115; Name=CF833115; organism=Citrus sinensis; type=EST; length=800bp
TTTTTTTTTTTTTTTTTAAGAAATAAAATACATAAATTTGTTCTTTTATT
TGTAGATGAACAATCATCATTTGACCAAAGAGAAACGGATCTCACTTTCA
CAATATGGTGGGTACCAATTAAAAAAAAAAAAAAAGTTAAAACGAAAGCG
TTTAAACCTAGGACAACAAAAGGCAAAGATGCATGCAATTTTTTTTCTTC
TCTTTCTGTTTTTCAACACTAAAGAGTTGCTAACAACACAGTAACAATAA
TGATGATACTTTGAGACCTAATCCTTGTACTTCATCTCGGACATTTTAAA
GCCGGGCATGTCAAATGAGCTGGCGAACTTCTCAACATCAGCCTTGAGGG
CCTCGATGTCCTTGTTGTTCACCAAACCCTTGTTGAAGTCCTTCAAGAGC
TTTCCATACTCCTTTTGAATTTCCAACGTGAGGGTCACAGCGCGGTGAAA
AAACTCTCCAATTTGCTCGAAGTCCTTCTCCAACAAACCTCTGGAAGTCA
TGGCAGGAGTACCGATTCTTACTCCTCCAGGGGCCAAGGCACTGCTGTCA
CCAAACACAGCATTCTTGTTCACAGTAATGTTGCAAAGGTCACAGAGCTT
CTCAACCTTATTGCCAGTCAATCCAAGAGGGCGTAAATCCCAAAAAACAA
GGTGGTTCTCAGTTCCACCAGTGACAAGGCTGTATCCCTTGCCCGTCAGG
TAGTTCCCAAGTGCAACTGCATTGGCCTTGACTTGTTTCGCATAGGCCTT
GAATGCAGGGGTCGAGGCCTGTTTCAGGGCAACAGCTAGAGCACCAATCT
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