CF833115
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA1_RALSO (Serine hydroxymethyltransferase 1 OS=Ralstonia solanacearum GN=glyA1 PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 5.219e-18 Identity = 48/108 (44.44%), Postives = 67/108 (62.04%), Query Frame = -3 Query: 478 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLE 798 I AVA K+A +P FKAY +QV NA A+ L +G +V+G TE+H++ DLR +TG + EK+ +ITVNKNA+ D G+R+G+PAMT+RG E Sbjct: 267 IAGKAVAFKEAQSPTFKAYQEQVVKNARAMAETLMARGLRIVSGRTESHVMLVDLRAKSITGKEAEKVLGDAHITVNKNAIPNDPEKPFVTSGIRLGSPAMTTRGFKE 374
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA1_HAHCH (Serine hydroxymethyltransferase 1 OS=Hahella chejuensis (strain KCTC 2396) GN=glyA1 PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 5.219e-18 Identity = 50/117 (42.74%), Postives = 69/117 (58.97%), Query Frame = -3 Query: 451 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEF 798 I A AVA K+A PAF+ Y +QV NA A+ + + +GY +V+GGT+NHL DL G+TG + ITVNKN V D S G+RIGTP +T+RG EK+ ++ + Sbjct: 269 IAAKAVAFKEALEPAFRDYQQQVVNNARAMADAVKARGYKVVSGGTDNHLFLIDLIDKGVTGKDADAALGRAYITVNKNTVPNDPQSPFVTSGLRIGTPGVTTRGFKEKEVVELANW 385
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA1_BURS3 (Serine hydroxymethyltransferase 1 OS=Burkholderia sp. (strain 383) GN=glyA1 PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 5.219e-18 Identity = 51/115 (44.35%), Postives = 63/115 (54.78%), Query Frame = -3 Query: 457 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG 798 I AVA + FK Y V ANA ALG L G LVTGGT+NHL+ DLRP GL G VE+ + IT NKN + F G+R+GTPA T+RG +F ++G Sbjct: 272 IAGKAVAFGEVLQADFKTYIDNVLANAQALGEVLKAGGVDLVTGGTDNHLLLVDLRPKGLKGAPVEQALERAGITCNKNGIPFDTEKPTVTSGIRLGTPAGTTRGFGVAEFREVG 386
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_SHEAM (Serine hydroxymethyltransferase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=glyA PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 6.816e-18 Identity = 50/114 (43.86%), Postives = 66/114 (57.89%), Query Frame = -3 Query: 460 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQI 798 I AVA K+A P FK Y +QV NA A+ +GY +V+GGT+NHL+ DL LTG + + NITVNKN+V D S G+RIGTPA+T RG E + ++ Sbjct: 269 IAGKAVAFKEALEPEFKVYQQQVVTNAKAMVEVFLERGYKIVSGGTDNHLMLVDLIGRDLTGKEADAALGAANITVNKNSVPNDPRSPFITSGIRIGTPAITRRGFKEAEAREL 382
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_PROMP (Serine hydroxymethyltransferase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=glyA PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 6.816e-18 Identity = 50/116 (43.10%), Postives = 68/116 (58.62%), Query Frame = -3 Query: 454 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGE 798 I A AVA +A P F Y+KQV NA L + L +G +V+GGT+NH+V DLR + +TG + L NIT NKN V F S G+R+GT A+T+RG + F ++GE Sbjct: 267 IAAKAVAFGEALKPNFVNYSKQVINNAKVLSSTLIKRGIDIVSGGTDNHIVLLDLRSINMTGKVADLLVSEVNITANKNTVPFDPESPFVTSGLRLGTAALTTRGFNDDAFVEVGE 382
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_POLNA (Serine hydroxymethyltransferase OS=Polaromonas naphthalenivorans (strain CJ2) GN=glyA PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 6.816e-18 Identity = 47/110 (42.73%), Postives = 70/110 (63.64%), Query Frame = -3 Query: 472 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKD 798 I A A+A K+A +P FK Y +QV NA + LT +G +V+G TE+H++ DLR G+TG + E + ++T+NKNA+ D + GVRIGTPAMT+RG +++ Sbjct: 266 IAAKAIAFKEALSPEFKIYQQQVLKNAQIVAETLTQRGLRIVSGRTESHVMLVDLRAKGITGKEAEAVLGSAHMTINKNAIPNDPEKPMVTSGVRIGTPAMTTRGFGDEE 375
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_PHOLL (Serine hydroxymethyltransferase OS=Photorhabdus luminescens subsp. laumondii GN=glyA PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 6.816e-18 Identity = 51/114 (44.74%), Postives = 64/114 (56.14%), Query Frame = -3 Query: 460 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQI 798 I AVALK+A P FKAY QV NA A+ +GY +V+G TENHL DL +TG + NITVNKN+V D S GVRIGTPA+T RG + + ++ Sbjct: 269 IAGKAVALKEAMEPEFKAYQHQVADNAKAMVEVFLARGYKVVSGSTENHLFLLDLVDKNITGKDADAALGRANITVNKNSVPNDPKSPFVTSGVRIGTPAITRRGFKQAEAREL 382
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_PELPD (Serine hydroxymethyltransferase OS=Pelobacter propionicus (strain DSM 2379) GN=glyA PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 6.816e-18 Identity = 52/122 (42.62%), Postives = 65/122 (53.28%), Query Frame = -3 Query: 436 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAV 798 I A AVA K+A P FK Y +QV NA L L +G+ L +GGT+NHL+ D +TG E+ D IT NKN V F S G+RIGTPA T+ GL E + + F AV Sbjct: 263 IAAKAVAFKEALQPEFKQYQQQVVNNARTLAEELVKRGFKLTSGGTDNHLMLLDFSGTEITGKAAEEALDKAGITANKNTVPFETRSPFVTSGIRIGTPAATTHGLKEAEMVLVAGFIADAV 384
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_NITEU (Serine hydroxymethyltransferase OS=Nitrosomonas europaea GN=glyA PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 6.816e-18 Identity = 50/114 (43.86%), Postives = 68/114 (59.65%), Query Frame = -3 Query: 460 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQI 798 I A AVA K+AS+ AFK Y KQV NA + L +G +V+G T+ H+ DLR LTG + E + +ITVNKNA+ D G+RIGTPA+T+RG E + E++ Sbjct: 267 IAAKAVAFKEASSQAFKDYQKQVIENARVMARVLQQRGLRIVSGRTDCHMFLVDLRAKNLTGREAESALEAAHITVNKNAIPNDPQKPFVTSGIRIGTPAITTRGFKEPESEEL 380
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_MYCGA (Serine hydroxymethyltransferase OS=Mycoplasma gallisepticum GN=glyA PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 6.816e-18 Identity = 51/123 (41.46%), Postives = 72/123 (58.54%), Query Frame = -3 Query: 436 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDL-RPLGLTGNKVEKLCDLCNITVNKNAVFGDSS-ALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAV 798 I A A+A +A P FK Y K V N+ A KGY ++ GT+NHL +L + LTG+ VE NI VNKN + DS+ ++ P G+R+GT AMTSRGL++ DF QI ++ + + Sbjct: 261 IAAKAIAFDEALQPKFKTYIKNVIDNSKAFCEAFINKGYQIIANGTDNHLFSINLFKKFNLTGDLVENWLYQANIVVNKNMIPYDSNKSMNPSGIRLGTAAMTSRGLVQSDFVQIADWIDQII 383 The following BLAST results are available for this feature:
BLAST of CF833115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF833115 ID=CF833115; Name=CF833115; organism=Citrus sinensis; type=EST; length=800bpback to top |