CF833115

Overview
NameCF833115
Unique NameCF833115
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA1_RALSO (Serine hydroxymethyltransferase 1 OS=Ralstonia solanacearum GN=glyA1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.219e-18
Identity = 48/108 (44.44%), Postives = 67/108 (62.04%), Query Frame = -3
Query:  478 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLE 798
            I   AVA K+A +P FKAY +QV  NA A+   L  +G  +V+G TE+H++  DLR   +TG + EK+    +ITVNKNA+  D        G+R+G+PAMT+RG  E
Sbjct:  267 IAGKAVAFKEAQSPTFKAYQEQVVKNARAMAETLMARGLRIVSGRTESHVMLVDLRAKSITGKEAEKVLGDAHITVNKNAIPNDPEKPFVTSGIRLGSPAMTTRGFKE 374          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA1_HAHCH (Serine hydroxymethyltransferase 1 OS=Hahella chejuensis (strain KCTC 2396) GN=glyA1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.219e-18
Identity = 50/117 (42.74%), Postives = 69/117 (58.97%), Query Frame = -3
Query:  451 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEF 798
            I A AVA K+A  PAF+ Y +QV  NA A+ + +  +GY +V+GGT+NHL   DL   G+TG   +       ITVNKN V  D  S     G+RIGTP +T+RG  EK+  ++  +
Sbjct:  269 IAAKAVAFKEALEPAFRDYQQQVVNNARAMADAVKARGYKVVSGGTDNHLFLIDLIDKGVTGKDADAALGRAYITVNKNTVPNDPQSPFVTSGLRIGTPGVTTRGFKEKEVVELANW 385          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA1_BURS3 (Serine hydroxymethyltransferase 1 OS=Burkholderia sp. (strain 383) GN=glyA1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.219e-18
Identity = 51/115 (44.35%), Postives = 63/115 (54.78%), Query Frame = -3
Query:  457 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG 798
            I   AVA  +     FK Y   V ANA ALG  L   G  LVTGGT+NHL+  DLRP GL G  VE+  +   IT NKN + F         G+R+GTPA T+RG    +F ++G
Sbjct:  272 IAGKAVAFGEVLQADFKTYIDNVLANAQALGEVLKAGGVDLVTGGTDNHLLLVDLRPKGLKGAPVEQALERAGITCNKNGIPFDTEKPTVTSGIRLGTPAGTTRGFGVAEFREVG 386          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_SHEAM (Serine hydroxymethyltransferase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=glyA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.816e-18
Identity = 50/114 (43.86%), Postives = 66/114 (57.89%), Query Frame = -3
Query:  460 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQI 798
            I   AVA K+A  P FK Y +QV  NA A+      +GY +V+GGT+NHL+  DL    LTG + +      NITVNKN+V  D  S     G+RIGTPA+T RG  E +  ++
Sbjct:  269 IAGKAVAFKEALEPEFKVYQQQVVTNAKAMVEVFLERGYKIVSGGTDNHLMLVDLIGRDLTGKEADAALGAANITVNKNSVPNDPRSPFITSGIRIGTPAITRRGFKEAEAREL 382          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_PROMP (Serine hydroxymethyltransferase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=glyA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.816e-18
Identity = 50/116 (43.10%), Postives = 68/116 (58.62%), Query Frame = -3
Query:  454 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGE 798
            I A AVA  +A  P F  Y+KQV  NA  L + L  +G  +V+GGT+NH+V  DLR + +TG   + L    NIT NKN V F   S     G+R+GT A+T+RG  +  F ++GE
Sbjct:  267 IAAKAVAFGEALKPNFVNYSKQVINNAKVLSSTLIKRGIDIVSGGTDNHIVLLDLRSINMTGKVADLLVSEVNITANKNTVPFDPESPFVTSGLRLGTAALTTRGFNDDAFVEVGE 382          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_POLNA (Serine hydroxymethyltransferase OS=Polaromonas naphthalenivorans (strain CJ2) GN=glyA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.816e-18
Identity = 47/110 (42.73%), Postives = 70/110 (63.64%), Query Frame = -3
Query:  472 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKD 798
            I A A+A K+A +P FK Y +QV  NA  +   LT +G  +V+G TE+H++  DLR  G+TG + E +    ++T+NKNA+  D    +   GVRIGTPAMT+RG  +++
Sbjct:  266 IAAKAIAFKEALSPEFKIYQQQVLKNAQIVAETLTQRGLRIVSGRTESHVMLVDLRAKGITGKEAEAVLGSAHMTINKNAIPNDPEKPMVTSGVRIGTPAMTTRGFGDEE 375          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_PHOLL (Serine hydroxymethyltransferase OS=Photorhabdus luminescens subsp. laumondii GN=glyA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.816e-18
Identity = 51/114 (44.74%), Postives = 64/114 (56.14%), Query Frame = -3
Query:  460 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQI 798
            I   AVALK+A  P FKAY  QV  NA A+      +GY +V+G TENHL   DL    +TG   +      NITVNKN+V  D  S     GVRIGTPA+T RG  + +  ++
Sbjct:  269 IAGKAVALKEAMEPEFKAYQHQVADNAKAMVEVFLARGYKVVSGSTENHLFLLDLVDKNITGKDADAALGRANITVNKNSVPNDPKSPFVTSGVRIGTPAITRRGFKQAEAREL 382          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_PELPD (Serine hydroxymethyltransferase OS=Pelobacter propionicus (strain DSM 2379) GN=glyA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.816e-18
Identity = 52/122 (42.62%), Postives = 65/122 (53.28%), Query Frame = -3
Query:  436 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAV 798
            I A AVA K+A  P FK Y +QV  NA  L   L  +G+ L +GGT+NHL+  D     +TG   E+  D   IT NKN V F   S     G+RIGTPA T+ GL E +   +  F   AV
Sbjct:  263 IAAKAVAFKEALQPEFKQYQQQVVNNARTLAEELVKRGFKLTSGGTDNHLMLLDFSGTEITGKAAEEALDKAGITANKNTVPFETRSPFVTSGIRIGTPAATTHGLKEAEMVLVAGFIADAV 384          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_NITEU (Serine hydroxymethyltransferase OS=Nitrosomonas europaea GN=glyA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.816e-18
Identity = 50/114 (43.86%), Postives = 68/114 (59.65%), Query Frame = -3
Query:  460 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQI 798
            I A AVA K+AS+ AFK Y KQV  NA  +   L  +G  +V+G T+ H+   DLR   LTG + E   +  +ITVNKNA+  D        G+RIGTPA+T+RG  E + E++
Sbjct:  267 IAAKAVAFKEASSQAFKDYQKQVIENARVMARVLQQRGLRIVSGRTDCHMFLVDLRAKNLTGREAESALEAAHITVNKNAIPNDPQKPFVTSGIRIGTPAITTRGFKEPESEEL 380          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_MYCGA (Serine hydroxymethyltransferase OS=Mycoplasma gallisepticum GN=glyA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.816e-18
Identity = 51/123 (41.46%), Postives = 72/123 (58.54%), Query Frame = -3
Query:  436 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDL-RPLGLTGNKVEKLCDLCNITVNKNAVFGDSS-ALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAV 798
            I A A+A  +A  P FK Y K V  N+ A       KGY ++  GT+NHL   +L +   LTG+ VE      NI VNKN +  DS+ ++ P G+R+GT AMTSRGL++ DF QI ++  + +
Sbjct:  261 IAAKAIAFDEALQPKFKTYIKNVIDNSKAFCEAFINKGYQIIANGTDNHLFSINLFKKFNLTGDLVENWLYQANIVVNKNMIPYDSNKSMNPSGIRLGTAAMTSRGLVQSDFVQIADWIDQII 383          
The following BLAST results are available for this feature:
BLAST of CF833115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA1_RALSO5.219e-1844.44Serine hydroxymethyltransferase 1 OS=Ralstonia sol... [more]
GLYA1_HAHCH5.219e-1842.74Serine hydroxymethyltransferase 1 OS=Hahella cheju... [more]
GLYA1_BURS35.219e-1844.35Serine hydroxymethyltransferase 1 OS=Burkholderia ... [more]
GLYA_SHEAM6.816e-1843.86Serine hydroxymethyltransferase OS=Shewanella amaz... [more]
GLYA_PROMP6.816e-1843.10Serine hydroxymethyltransferase OS=Prochlorococcus... [more]
GLYA_POLNA6.816e-1842.73Serine hydroxymethyltransferase OS=Polaromonas nap... [more]
GLYA_PHOLL6.816e-1844.74Serine hydroxymethyltransferase OS=Photorhabdus lu... [more]
GLYA_PELPD6.816e-1842.62Serine hydroxymethyltransferase OS=Pelobacter prop... [more]
GLYA_NITEU6.816e-1843.86Serine hydroxymethyltransferase OS=Nitrosomonas eu... [more]
GLYA_MYCGA6.816e-1841.46Serine hydroxymethyltransferase OS=Mycoplasma gall... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_03A20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833115 ID=CF833115; Name=CF833115; organism=Citrus sinensis; type=EST; length=800bp
TTTTTTTTTTTTTTTTTAAGAAATAAAATACATAAATTTGTTCTTTTATT
TGTAGATGAACAATCATCATTTGACCAAAGAGAAACGGATCTCACTTTCA
CAATATGGTGGGTACCAATTAAAAAAAAAAAAAAAGTTAAAACGAAAGCG
TTTAAACCTAGGACAACAAAAGGCAAAGATGCATGCAATTTTTTTTCTTC
TCTTTCTGTTTTTCAACACTAAAGAGTTGCTAACAACACAGTAACAATAA
TGATGATACTTTGAGACCTAATCCTTGTACTTCATCTCGGACATTTTAAA
GCCGGGCATGTCAAATGAGCTGGCGAACTTCTCAACATCAGCCTTGAGGG
CCTCGATGTCCTTGTTGTTCACCAAACCCTTGTTGAAGTCCTTCAAGAGC
TTTCCATACTCCTTTTGAATTTCCAACGTGAGGGTCACAGCGCGGTGAAA
AAACTCTCCAATTTGCTCGAAGTCCTTCTCCAACAAACCTCTGGAAGTCA
TGGCAGGAGTACCGATTCTTACTCCTCCAGGGGCCAAGGCACTGCTGTCA
CCAAACACAGCATTCTTGTTCACAGTAATGTTGCAAAGGTCACAGAGCTT
CTCAACCTTATTGCCAGTCAATCCAAGAGGGCGTAAATCCCAAAAAACAA
GGTGGTTCTCAGTTCCACCAGTGACAAGGCTGTATCCCTTGCCCGTCAGG
TAGTTCCCAAGTGCAACTGCATTGGCCTTGACTTGTTTCGCATAGGCCTT
GAATGCAGGGGTCGAGGCCTGTTTCAGGGCAACAGCTAGAGCACCAATCT
back to top