CF833115

Overview
NameCF833115
Unique NameCF833115
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_BAUCH (Serine hydroxymethyltransferase OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=glyA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.901e-18
Identity = 48/117 (41.03%), Postives = 66/117 (56.41%), Query Frame = -3
Query:  451 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEF 798
            I   A+ALK+A  P FK Y  QV  NA  + N    + +++V+GGT+NHL   DL    +TG + +      NITVNKN +  D  S+    G+RIGTPA+T RG  E D  Q+  +
Sbjct:  269 IAGKAIALKEAMEPEFKIYQHQVVKNAKTMVNVFLNRNFNVVSGGTDNHLFLLDLVDKNITGQEADAALSYTNITVNKNIIPNDPQSSFVTSGIRIGTPAITRRGFNETDAYQLANW 385          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_ACIF5 (Serine hydroxymethyltransferase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=glyA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.901e-18
Identity = 52/115 (45.22%), Postives = 68/115 (59.13%), Query Frame = -3
Query:  457 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG 798
            I A AVA ++A  P FK+Y +QV  NA  L   L G+GY  V+GGT+NHL   +L    +TG + E+     NITVNKNAV F         G+RIGTPA T+RG  E +  ++G
Sbjct:  267 IAAKAVAFREALQPEFKSYQQQVIHNAQTLSKVLAGRGYGAVSGGTDNHLFLLNLGE-KVTGKEAEEALGQANITVNKNAVPFDIRPPAVTSGIRIGTPAATTRGFGEAEMHRLG 380          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_ACIF2 (Serine hydroxymethyltransferase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=glyA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.901e-18
Identity = 52/115 (45.22%), Postives = 68/115 (59.13%), Query Frame = -3
Query:  457 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG 798
            I A AVA ++A  P FK+Y +QV  NA  L   L G+GY  V+GGT+NHL   +L    +TG + E+     NITVNKNAV F         G+RIGTPA T+RG  E +  ++G
Sbjct:  267 IAAKAVAFREALQPEFKSYQQQVIHNAQTLSKVLAGRGYGAVSGGTDNHLFLLNLGE-KVTGKEAEEALGQANITVNKNAVPFDIRPPAVTSGIRIGTPAATTRGFGEAEMHRLG 380          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_ACIAC (Serine hydroxymethyltransferase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.901e-18
Identity = 46/110 (41.82%), Postives = 67/110 (60.91%), Query Frame = -3
Query:  472 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKD 798
            I A AVA K+A TP FKAY +QV  NA      L  +G  +++G TE+H++  DLR  G+TG   E      +IT+NKN++  D    +   G+R+GTPA+T+RG  E++
Sbjct:  266 IAAKAVAFKEALTPEFKAYQQQVAKNAKVFAETLIERGLRIISGRTESHVMLVDLRAKGITGKAAEAALGQAHITINKNSIPNDPEKPMVTSGIRVGTPAITTRGFKEEE 375          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA1_AGRT5 (Serine hydroxymethyltransferase 1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=glyA1 PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 8.901e-18
Identity = 52/116 (44.83%), Postives = 64/116 (55.17%), Query Frame = -3
Query:  454 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGE 798
            I A AVA  +A  P FK YA QV  NA AL   L   G  +V+GGT+NHL+  DLR    TG + E       IT NKN + F         GVR+GTPA T+RG  E +F +IG+
Sbjct:  272 IAAKAVAFGEALQPEFKDYAAQVVKNAKALAETLIEGGLDVVSGGTDNHLMLVDLRKKNATGKRAEAALGRAYITCNKNGIPFDPEKPFVTSGVRLGTPAGTTRGFKEAEFREIGK 387          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_THIDA (Serine hydroxymethyltransferase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=glyA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.163e-17
Identity = 57/167 (34.13%), Postives = 82/167 (49.10%), Query Frame = -3
Query:  301 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 798
            I   A A K+A+T  FK Y +QV  NA+ +   L  +G  +++G TE+H+   DLR   LTG + E L    +ITVNKNA+  D        G+RIGTPAMT+RG  E + EQ+                    L+ D      +   +E +K +V K  + F + G
Sbjct:  266 IAGKATAFKEAATKDFKRYQEQVIDNALVMCKVLVERGLRIISGRTESHVFLVDLRAKNLTGKEAEALLGRAHITVNKNAIPNDPQKPFVTSGIRIGTPAMTTRGFTELEAEQLAH------------------LIADVLDAPNDEAVVERVKGEVAKLTAKFPVYG 414          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_SHEWM (Serine hydroxymethyltransferase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=glyA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.163e-17
Identity = 62/167 (37.13%), Postives = 82/167 (49.10%), Query Frame = -3
Query:  301 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 798
            I A AVA K+A  P F AY +QV  NA A+      +GY +V+GGT+NHL   DL    +TG   +    L NITVNKN+V  D  S     G+RIG+PA+T RG  E           +AV LT          + D    + N   IE +K  V +  + F + G
Sbjct:  270 IAAKAVAFKEALEPEFTAYQEQVVVNAQAMAKTFIERGYDVVSGGTDNHLFLLDLISKDITGKDADAALGLANITVNKNSVPNDPRSPFVTSGLRIGSPAITRRGFKEA----------QAVELT--------NWMCDVLDDITNEGTIERVKNQVLELCAKFPVYG 418          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_SHESW (Serine hydroxymethyltransferase OS=Shewanella sp. (strain W3-18-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.163e-17
Identity = 51/114 (44.74%), Postives = 66/114 (57.89%), Query Frame = -3
Query:  460 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQI 798
            I   AVA K+A  P FK Y +QV  NA A+      +GY +V+GGT NHL+  DL    LTG + +      NITVNKN+V  D  S     GVRIGTPA+T RG  E + +++
Sbjct:  269 IAGKAVAFKEALEPEFKVYQQQVVNNAKAMVEVFLERGYKIVSGGTSNHLMLVDLIGRDLTGKEADAALGSANITVNKNSVPNDPRSPFVTSGVRIGTPAITRRGFKEAESKEL 382          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_SHELP (Serine hydroxymethyltransferase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=glyA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.163e-17
Identity = 60/167 (35.93%), Postives = 82/167 (49.10%), Query Frame = -3
Query:  301 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 798
            I   AVA K+A +P FK Y +QV  NA A+ N    +G+ +V+GGTENHL   DL    +TG   +      NITVNKN+V  D  S     G+RIG+PA+T RG  E +               +E+      +L D N    N   IE +K  V +  + F + G
Sbjct:  269 IAGKAVAFKEALSPEFKEYQQQVVVNAKAMANTFIERGFDVVSGGTENHLFLLDLIAKDITGKDADAALGRANITVNKNSVPNDPRSPFVTSGLRIGSPAITRRGFKEAE--------------AVELTNWICDVLDDIN----NEATIERVKNQVLELCAKFPVYG 417          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_SHEDO (Serine hydroxymethyltransferase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=glyA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.163e-17
Identity = 51/110 (46.36%), Postives = 64/110 (58.18%), Query Frame = -3
Query:  472 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKD 798
            I   AVA K+A  P FK Y +QV  NA A+      +GY +V+GGT+NHL+  DL    LTG + +      NITVNKN+V  D  S     GVRIGTPA+T RG  E +
Sbjct:  269 IAGKAVAFKEALEPEFKTYQQQVVKNAKAMVEVFIERGYKIVSGGTDNHLMLVDLIGRDLTGKEADAALGSANITVNKNSVPNDPRSPFVTSGVRIGTPAITRRGFKEAE 378          
The following BLAST results are available for this feature:
BLAST of CF833115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_BAUCH8.901e-1841.03Serine hydroxymethyltransferase OS=Baumannia cicad... [more]
GLYA_ACIF58.901e-1845.22Serine hydroxymethyltransferase OS=Acidithiobacill... [more]
GLYA_ACIF28.901e-1845.22Serine hydroxymethyltransferase OS=Acidithiobacill... [more]
GLYA_ACIAC8.901e-1841.82Serine hydroxymethyltransferase OS=Acidovorax aven... [more]
GLYA1_AGRT58.901e-1844.83Serine hydroxymethyltransferase 1 OS=Agrobacterium... [more]
GLYA_THIDA1.163e-1734.13Serine hydroxymethyltransferase OS=Thiobacillus de... [more]
GLYA_SHEWM1.163e-1737.13Serine hydroxymethyltransferase OS=Shewanella wood... [more]
GLYA_SHESW1.163e-1744.74Serine hydroxymethyltransferase OS=Shewanella sp. ... [more]
GLYA_SHELP1.163e-1735.93Serine hydroxymethyltransferase OS=Shewanella loih... [more]
GLYA_SHEDO1.163e-1746.36Serine hydroxymethyltransferase OS=Shewanella deni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03A20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833115 ID=CF833115; Name=CF833115; organism=Citrus sinensis; type=EST; length=800bp
TTTTTTTTTTTTTTTTTAAGAAATAAAATACATAAATTTGTTCTTTTATT
TGTAGATGAACAATCATCATTTGACCAAAGAGAAACGGATCTCACTTTCA
CAATATGGTGGGTACCAATTAAAAAAAAAAAAAAAGTTAAAACGAAAGCG
TTTAAACCTAGGACAACAAAAGGCAAAGATGCATGCAATTTTTTTTCTTC
TCTTTCTGTTTTTCAACACTAAAGAGTTGCTAACAACACAGTAACAATAA
TGATGATACTTTGAGACCTAATCCTTGTACTTCATCTCGGACATTTTAAA
GCCGGGCATGTCAAATGAGCTGGCGAACTTCTCAACATCAGCCTTGAGGG
CCTCGATGTCCTTGTTGTTCACCAAACCCTTGTTGAAGTCCTTCAAGAGC
TTTCCATACTCCTTTTGAATTTCCAACGTGAGGGTCACAGCGCGGTGAAA
AAACTCTCCAATTTGCTCGAAGTCCTTCTCCAACAAACCTCTGGAAGTCA
TGGCAGGAGTACCGATTCTTACTCCTCCAGGGGCCAAGGCACTGCTGTCA
CCAAACACAGCATTCTTGTTCACAGTAATGTTGCAAAGGTCACAGAGCTT
CTCAACCTTATTGCCAGTCAATCCAAGAGGGCGTAAATCCCAAAAAACAA
GGTGGTTCTCAGTTCCACCAGTGACAAGGCTGTATCCCTTGCCCGTCAGG
TAGTTCCCAAGTGCAACTGCATTGGCCTTGACTTGTTTCGCATAGGCCTT
GAATGCAGGGGTCGAGGCCTGTTTCAGGGCAACAGCTAGAGCACCAATCT
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