CF833115

Overview
NameCF833115
Unique NameCF833115
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_METCA (Serine hydroxymethyltransferase OS=Methylococcus capsulatus GN=glyA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.518e-17
Identity = 50/105 (47.62%), Postives = 63/105 (60.00%), Query Frame = -3
Query:  487 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRG 798
            I A AVALK+A  P F+ Y   V  NA A+      +GY +V+GGT NHL   DL   GLTG   E++    +ITVNKNAV  D  S     G+R+GTPA+T+RG
Sbjct:  269 IAAKAVALKEALQPDFRHYQSAVMENADAMAKTFIERGYRIVSGGTRNHLFLVDLIQKGLTGKLAEEVLGRAHITVNKNAVPNDPQSPFVTSGIRVGTPAVTTRG 373          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_LISW6 (Serine hydroxymethyltransferase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=glyA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.518e-17
Identity = 48/115 (41.74%), Postives = 67/115 (58.26%), Query Frame = -3
Query:  457 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG 798
            I A AVA  +A  P F  Y +Q+  N+  L   L     +++TGG++NHL+  DL+PL LTG  VEK+ D   ITVNKN + F   S     G+R+G  A+T+RG  E   E++G
Sbjct:  263 IAAKAVAFGEALQPEFTTYCEQIIRNSKKLAETLQAHDVTVLTGGSDNHLLLIDLKPLSLTGKAVEKVLDEVGITVNKNTIPFETESPFVTSGIRVGVAAVTTRGFDEVAIEKVG 377          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_LACS1 (Serine hydroxymethyltransferase OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=glyA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.518e-17
Identity = 56/156 (35.90%), Postives = 84/156 (53.85%), Query Frame = -3
Query:  337 IGALAVALKQASTPAFKAYAKQVKANAVALGN-YLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKAD 798
            I   A A  +A TP FK Y +Q+  N   +   +   +   LV+ G++NHL+  D+R  GL G + EKL D  NITVNKN++ F   S     G+RIGTPA+TSRG  E+D  Q+ +     + LT+   K+  ++L D  + +    D   + A+
Sbjct:  263 IAGKAAAFGEALTPEFKEYGEQIIRNTQEMALCFADNEKARLVSNGSDNHLLLLDVRNFGLNGKEAEKLLDQVNITVNKNSIPFETLSPFKTSGIRIGTPAITSRGFNEEDSYQVAK-----LILTVLANKDDEQVLADVKRQVKELTDAHPIYAE 413          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_KOSOT (Serine hydroxymethyltransferase OS=Kosmotoga olearia (strain TBF 19.5.1) GN=glyA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.518e-17
Identity = 55/157 (35.03%), Postives = 82/157 (52.23%), Query Frame = -3
Query:  355 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAV--------TLTLEIQKEYGKLLKDFNKGLVNNKDI 798
            I A AVA  +A    FK Y  ++  NA AL   L   G  +V+GGT+ HL   DL P  +TG   EK  +  +ITVNKN +  ++ S     G+RIGTPA+T+RG+ E + + I E   + +        T+  EI++E  K + +  +     KD+
Sbjct:  265 IAAKAVAFGEALKDEFKEYQMRIITNAKALAKELENLGLRIVSGGTDTHLFLVDLNPKNVTGKAAEKALESADITVNKNTIPKETRSPFVTSGIRIGTPAVTTRGMGESEMKVIAELIVKVIDNIQDEKGTIPEEIREEVKKAVHELTEKFPLYKDL 421          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_EHRCR (Serine hydroxymethyltransferase OS=Ehrlichia chaffeensis (strain Arkansas) GN=glyA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.518e-17
Identity = 53/151 (35.10%), Postives = 77/151 (50.99%), Query Frame = -3
Query:  370 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAV-------TLTLEIQKEYGKLLKDFNKGLV 798
            I A AVA  +A  P FK YAKQ+  N+ ALG     +G  LVTGGT++H+V  DLR   +TG       +   I  NKNA+ F         G+R G+ A TSRGL E +F +IG      +       ++ L ++++  K +K+     +
Sbjct:  270 IAAKAVAFAEALKPEFKDYAKQIIKNSKALGEVFKERGLDLVTGGTDSHMVVLDLRSKSVTGKDAVLALEKLGIICNKNAIPFDPEKPFVTSGLRFGSAAETSRGLQESEFREIGSMVCDVIDSLKASDSVRLSVERDIIKRVKELTSNFI 420          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_BRUSU (Serine hydroxymethyltransferase OS=Brucella suis GN=glyA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.518e-17
Identity = 51/115 (44.35%), Postives = 63/115 (54.78%), Query Frame = -3
Query:  457 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG 798
            I   AVA  +A    FK YAK V  NA AL   L   G  +V+GGT+NHL+  DLRP   TG + E      NIT NKN + F         GVR+GTPA T+RG    +F++IG
Sbjct:  280 IAGKAVAFAEALKLEFKLYAKNVVDNARALAEELKSHGLDIVSGGTDNHLMLVDLRPKNATGKRAEAALGRANITCNKNGIPFDPEKPFVTSGVRLGTPAGTTRGFGVAEFKEIG 394          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_BRUC2 (Serine hydroxymethyltransferase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=glyA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.518e-17
Identity = 51/115 (44.35%), Postives = 63/115 (54.78%), Query Frame = -3
Query:  457 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG 798
            I   AVA  +A    FK YAK V  NA AL   L   G  +V+GGT+NHL+  DLRP   TG + E      NIT NKN + F         GVR+GTPA T+RG    +F++IG
Sbjct:  280 IAGKAVAFAEALKLEFKLYAKNVVDNARALAEELKSHGLDIVSGGTDNHLMLVDLRPKNATGKRAEAALGRANITCNKNGIPFDPEKPFVTSGVRLGTPAGTTRGFGVAEFKEIG 394          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_AZOSB (Serine hydroxymethyltransferase OS=Azoarcus sp. (strain BH72) GN=glyA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.518e-17
Identity = 51/115 (44.35%), Postives = 71/115 (61.74%), Query Frame = -3
Query:  460 IGALAVALKQASTPAFKAYAKQVKANAVALGNYL-TGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQI 798
            I A AVA K+A+TPAF+ Y +QV ANA  +   L   +G  +V+G TE+H+   DLR   +TG + E +    +ITVNKN++  D        G+RIG+PAMT+RG  E + EQI
Sbjct:  266 IAAKAVAFKEAATPAFRDYQEQVIANARVMARVLGEERGLRIVSGRTESHVFLVDLRSKNITGKEAEAVLGSAHITVNKNSIPNDPQKPFVTSGIRIGSPAMTTRGFTEIEAEQI 380          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_ANASK (Serine hydroxymethyltransferase OS=Anaeromyxobacter sp. (strain K) GN=glyA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.518e-17
Identity = 49/122 (40.16%), Postives = 68/122 (55.74%), Query Frame = -3
Query:  436 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAV 798
            I A AVA  +A  P FKAY +++  NA  L   L   G  LV+GGT+NHL+  DLRP  LTG   E+      ITVNKN +  D    +   G+R+GTPA+T+RG+  ++   +     R +
Sbjct:  266 IAAKAVAFGEALRPEFKAYQRRIVENAQVLAEGLKSAGLRLVSGGTDNHLMLVDLRPKKLTGKIAEEALGRAGITVNKNMIPWDPEKPMTTSGIRVGTPALTTRGMGSREMTLVAALIGRVL 387          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_ANAD2 (Serine hydroxymethyltransferase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=glyA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.518e-17
Identity = 49/122 (40.16%), Postives = 68/122 (55.74%), Query Frame = -3
Query:  436 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAV 798
            I A AVA  +A  P FKAY +++  NA  L   L   G  LV+GGT+NHL+  DLRP  LTG   E+      ITVNKN +  D    +   G+R+GTPA+T+RG+  ++   +     R +
Sbjct:  266 IAAKAVAFGEALRPEFKAYQRRIVENAQVLAEGLKSAGLRLVSGGTDNHLMLVDLRPKKLTGKIAEEALGKAGITVNKNMIPWDPEKPMTTSGIRVGTPALTTRGMGSREMTLVAALIGRVL 387          
The following BLAST results are available for this feature:
BLAST of CF833115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_METCA1.518e-1747.62Serine hydroxymethyltransferase OS=Methylococcus c... [more]
GLYA_LISW61.518e-1741.74Serine hydroxymethyltransferase OS=Listeria welshi... [more]
GLYA_LACS11.518e-1735.90Serine hydroxymethyltransferase OS=Lactobacillus s... [more]
GLYA_KOSOT1.518e-1735.03Serine hydroxymethyltransferase OS=Kosmotoga olear... [more]
GLYA_EHRCR1.518e-1735.10Serine hydroxymethyltransferase OS=Ehrlichia chaff... [more]
GLYA_BRUSU1.518e-1744.35Serine hydroxymethyltransferase OS=Brucella suis G... [more]
GLYA_BRUC21.518e-1744.35Serine hydroxymethyltransferase OS=Brucella canis ... [more]
GLYA_AZOSB1.518e-1744.35Serine hydroxymethyltransferase OS=Azoarcus sp. (s... [more]
GLYA_ANASK1.518e-1740.16Serine hydroxymethyltransferase OS=Anaeromyxobacte... [more]
GLYA_ANAD21.518e-1740.16Serine hydroxymethyltransferase OS=Anaeromyxobacte... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03A20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833115 ID=CF833115; Name=CF833115; organism=Citrus sinensis; type=EST; length=800bp
TTTTTTTTTTTTTTTTTAAGAAATAAAATACATAAATTTGTTCTTTTATT
TGTAGATGAACAATCATCATTTGACCAAAGAGAAACGGATCTCACTTTCA
CAATATGGTGGGTACCAATTAAAAAAAAAAAAAAAGTTAAAACGAAAGCG
TTTAAACCTAGGACAACAAAAGGCAAAGATGCATGCAATTTTTTTTCTTC
TCTTTCTGTTTTTCAACACTAAAGAGTTGCTAACAACACAGTAACAATAA
TGATGATACTTTGAGACCTAATCCTTGTACTTCATCTCGGACATTTTAAA
GCCGGGCATGTCAAATGAGCTGGCGAACTTCTCAACATCAGCCTTGAGGG
CCTCGATGTCCTTGTTGTTCACCAAACCCTTGTTGAAGTCCTTCAAGAGC
TTTCCATACTCCTTTTGAATTTCCAACGTGAGGGTCACAGCGCGGTGAAA
AAACTCTCCAATTTGCTCGAAGTCCTTCTCCAACAAACCTCTGGAAGTCA
TGGCAGGAGTACCGATTCTTACTCCTCCAGGGGCCAAGGCACTGCTGTCA
CCAAACACAGCATTCTTGTTCACAGTAATGTTGCAAAGGTCACAGAGCTT
CTCAACCTTATTGCCAGTCAATCCAAGAGGGCGTAAATCCCAAAAAACAA
GGTGGTTCTCAGTTCCACCAGTGACAAGGCTGTATCCCTTGCCCGTCAGG
TAGTTCCCAAGTGCAACTGCATTGGCCTTGACTTGTTTCGCATAGGCCTT
GAATGCAGGGGTCGAGGCCTGTTTCAGGGCAACAGCTAGAGCACCAATCT
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