CF833115

Overview
NameCF833115
Unique NameCF833115
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_PELPB (Serine hydroxymethyltransferase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.674e-22
Identity = 58/123 (47.15%), Postives = 71/123 (57.72%), Query Frame = -3
Query:  433 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVT 798
            I   AVA  +A  PAF+ YA QV  NA A+    T  GY +V+GGT+NHL+  DLR   +TG   E L     ITVNKN V F D S     G+R+GTPAMT+RG+ E D   I E   R +T
Sbjct:  284 IAGKAVAFGEALQPAFRDYAAQVIKNAAAMAEKFTELGYKIVSGGTKNHLMLLDLRSKNVTGKVAENLLHSAGITVNKNMVPFDDKSPFVTSGIRVGTPAMTTRGMNEADSVLIAELIDRVIT 406          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_CHLPD (Serine hydroxymethyltransferase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=glyA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.674e-22
Identity = 57/123 (46.34%), Postives = 73/123 (59.35%), Query Frame = -3
Query:  433 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVT 798
            I   AVA  +A  P F+ YA QVK NA  + +  +  GY++V+GGT+NHL+  DLR   + G   E L     ITVNKN V F D S     G+RIGTPAMT+RG+ E D E+I E   R V+
Sbjct:  284 IAGKAVAFAEALRPEFRDYALQVKKNAAVMADKFSSLGYTIVSGGTKNHLMLLDLRNKNVNGKVAENLLHQAGITVNKNMVPFDDKSPFVTSGIRIGTPAMTTRGMKESDSERIVELIDRVVS 406          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_RICPU (Serine hydroxymethyltransferase OS=Rickettsia peacockii (strain Rustic) GN=glyA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.492e-22
Identity = 62/156 (39.74%), Postives = 85/156 (54.49%), Query Frame = -3
Query:  334 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADV 798
            I A AVA  +   P +K+Y +QV +NA AL + L  +GY ++TGGT+NH+V  DLR  G+TG       D   IT NKNA+ F ++S     G+R+GTPA T+RG  EKDF  +G                   ++ D   GL NN+D  AL+  V
Sbjct:  268 IAAKAVAFLENLQPEYKSYIQQVISNAKALASSLQERGYDILTGGTDNHIVLVDLRKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGH------------------MVADILDGLKNNEDNSALEQKV 405          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_RICCN (Serine hydroxymethyltransferase OS=Rickettsia conorii GN=glyA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.492e-22
Identity = 62/156 (39.74%), Postives = 85/156 (54.49%), Query Frame = -3
Query:  334 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADV 798
            I A AVA  +   P +K+Y +QV +NA AL + L  +GY ++TGGT+NH+V  DLR  G+TG       D   IT NKNA+ F ++S     G+R+GTPA T+RG  EKDF  +G                   ++ D   GL NN+D  AL+  V
Sbjct:  268 IAAKAVAFLENLQPEYKSYIQQVISNAKALASSLQERGYDILTGGTDNHIVLVDLRKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGH------------------MVADILDGLKNNEDNSALEQKV 405          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_RICAE (Serine hydroxymethyltransferase OS=Rickettsia africae (strain ESF-5) GN=glyA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.492e-22
Identity = 62/156 (39.74%), Postives = 85/156 (54.49%), Query Frame = -3
Query:  334 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADV 798
            I A AVA  +   P +K+Y +QV +NA AL + L  +GY ++TGGT+NH+V  DLR  G+TG       D   IT NKNA+ F ++S     G+R+GTPA T+RG  EKDF  +G                   ++ D   GL NN+D  AL+  V
Sbjct:  268 IAAKAVAFLENLQPEYKSYIQQVISNAKALASSLQERGYDILTGGTDNHIVLVDLRKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGH------------------MVADILDGLKNNEDNSALEQKV 405          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_CLOPH (Serine hydroxymethyltransferase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=glyA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.492e-22
Identity = 58/136 (42.65%), Postives = 83/136 (61.03%), Query Frame = -3
Query:  394 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLL 798
            I A A+  K+A   +FK YA ++ +NA AL N LT +G++LV+GGT+NHL+  DL+ + +TG + E + D  NIT NKN V  D +S     G+R+GTPA+T+RG  EKD   + E     V   ++  KE  K L
Sbjct:  267 IAAKAICFKEALDDSFKDYAGKIISNAGALANELTARGFNLVSGGTDNHLMLIDLQNMNITGKEAEHILDEANITCNKNTVPNDPASPFVTSGIRLGTPAITTRGFNEKDMAVVAEAI-SLVVKDVDKNKEQAKAL 401          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_CHLTE (Serine hydroxymethyltransferase OS=Chlorobium tepidum GN=glyA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.492e-22
Identity = 57/123 (46.34%), Postives = 73/123 (59.35%), Query Frame = -3
Query:  433 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVT 798
            I   AVA  +A  P FKAYA+Q+K NA A+       GY +V+GGT+NHL+  DLR   + G   E L     ITVNKN V F D S     G+RIGTPAMT+RG+   + E+I EF  R ++
Sbjct:  284 IAGKAVAFGEALQPEFKAYAQQIKDNAAAMAAKFLAAGYHIVSGGTKNHLMLLDLRNKNVNGKVAENLLHEAGITVNKNMVPFDDKSPFVTSGIRIGTPAMTTRGMKVAEAEKIVEFIDRVIS 406          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_RICAH (Serine hydroxymethyltransferase OS=Rickettsia akari (strain Hartford) GN=glyA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.561e-22
Identity = 58/148 (39.19%), Postives = 82/148 (55.41%), Query Frame = -3
Query:  358 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKD 798
            + A AVA  ++  P +K+Y KQ+ +NA AL + L  +GY ++TGGT+NH+V  DLR  G+TG       D   IT NKNA+ F ++S     G+R+GTPA T+RG  E+DF  +G                   ++ D   GL NNKD
Sbjct:  268 VAAKAVAFLESLQPEYKSYIKQIISNAKALASSLQERGYDILTGGTDNHIVLVDLRKNGITGKLAANSLDNAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEQDFVSVGH------------------MVADILDGLKNNKD 397          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_GLOVI (Serine hydroxymethyltransferase OS=Gloeobacter violaceus GN=gylA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.561e-22
Identity = 58/123 (47.15%), Postives = 75/123 (60.98%), Query Frame = -3
Query:  433 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVT 798
            I A AVA  +A  P FK YA  V ANA AL   LT +G +LV+GGT+NHL+  DLR + LTG + + L    NIT NKN + F   S     G+R+G+PAMT+RGL   +F +IGE     +T
Sbjct:  268 IAAKAVAFGEALQPEFKTYAADVVANARALAERLTARGLTLVSGGTDNHLMLVDLRSVDLTGKQADLLMSDVNITTNKNTIPFDPQSPFVTSGLRLGSPAMTTRGLGTTEFGEIGEIIANRLT 390          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_GEOSM (Serine hydroxymethyltransferase OS=Geobacter sp. (strain M21) GN=glyA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.561e-22
Identity = 57/117 (48.72%), Postives = 70/117 (59.83%), Query Frame = -3
Query:  451 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEF 798
            I A AVA K+A TP FK Y +Q+  NA AL   LT +G+ L +GGT+NHL+  DL    LTG   E+  D   ITVNKN + F   S     G+RIGTPA TS GL E + EQ+  F
Sbjct:  263 IAAKAVAFKEALTPEFKKYQEQIVKNAKALAEGLTKRGFKLTSGGTDNHLMLVDLSQTELTGKVAEEALDRAGITVNKNGIPFDTRSPFITSGIRIGTPAATSHGLKEAEMEQVAGF 379          
The following BLAST results are available for this feature:
BLAST of CF833115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_PELPB2.674e-2247.15Serine hydroxymethyltransferase OS=Pelodictyon pha... [more]
GLYA_CHLPD2.674e-2246.34Serine hydroxymethyltransferase OS=Chlorobium phae... [more]
GLYA_RICPU3.492e-2239.74Serine hydroxymethyltransferase OS=Rickettsia peac... [more]
GLYA_RICCN3.492e-2239.74Serine hydroxymethyltransferase OS=Rickettsia cono... [more]
GLYA_RICAE3.492e-2239.74Serine hydroxymethyltransferase OS=Rickettsia afri... [more]
GLYA_CLOPH3.492e-2242.65Serine hydroxymethyltransferase OS=Clostridium phy... [more]
GLYA_CHLTE3.492e-2246.34Serine hydroxymethyltransferase OS=Chlorobium tepi... [more]
GLYA_RICAH4.561e-2239.19Serine hydroxymethyltransferase OS=Rickettsia akar... [more]
GLYA_GLOVI4.561e-2247.15Serine hydroxymethyltransferase OS=Gloeobacter vio... [more]
GLYA_GEOSM4.561e-2248.72Serine hydroxymethyltransferase OS=Geobacter sp. (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03A20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833115 ID=CF833115; Name=CF833115; organism=Citrus sinensis; type=EST; length=800bp
TTTTTTTTTTTTTTTTTAAGAAATAAAATACATAAATTTGTTCTTTTATT
TGTAGATGAACAATCATCATTTGACCAAAGAGAAACGGATCTCACTTTCA
CAATATGGTGGGTACCAATTAAAAAAAAAAAAAAAGTTAAAACGAAAGCG
TTTAAACCTAGGACAACAAAAGGCAAAGATGCATGCAATTTTTTTTCTTC
TCTTTCTGTTTTTCAACACTAAAGAGTTGCTAACAACACAGTAACAATAA
TGATGATACTTTGAGACCTAATCCTTGTACTTCATCTCGGACATTTTAAA
GCCGGGCATGTCAAATGAGCTGGCGAACTTCTCAACATCAGCCTTGAGGG
CCTCGATGTCCTTGTTGTTCACCAAACCCTTGTTGAAGTCCTTCAAGAGC
TTTCCATACTCCTTTTGAATTTCCAACGTGAGGGTCACAGCGCGGTGAAA
AAACTCTCCAATTTGCTCGAAGTCCTTCTCCAACAAACCTCTGGAAGTCA
TGGCAGGAGTACCGATTCTTACTCCTCCAGGGGCCAAGGCACTGCTGTCA
CCAAACACAGCATTCTTGTTCACAGTAATGTTGCAAAGGTCACAGAGCTT
CTCAACCTTATTGCCAGTCAATCCAAGAGGGCGTAAATCCCAAAAAACAA
GGTGGTTCTCAGTTCCACCAGTGACAAGGCTGTATCCCTTGCCCGTCAGG
TAGTTCCCAAGTGCAACTGCATTGGCCTTGACTTGTTTCGCATAGGCCTT
GAATGCAGGGGTCGAGGCCTGTTTCAGGGCAACAGCTAGAGCACCAATCT
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