CF833115

Overview
NameCF833115
Unique NameCF833115
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_DEIRA (Serine hydroxymethyltransferase OS=Deinococcus radiodurans GN=glyA PE=3 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 4.561e-22
Identity = 55/122 (45.08%), Postives = 75/122 (61.48%), Query Frame = -3
Query:  436 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAV 798
            I A AVA  +A  P FK YA+Q+  NA AL      KGY +V+GGT+NHL   DLRP GL G K  +L D  +IT++K+ + +     L  GG+RIGTPA+T+RG+ E    Q+ +   RA+
Sbjct:  268 IAAKAVAFGEALRPEFKDYARQIIKNAQALAGEFQQKGYRVVSGGTDNHLFLLDLRPQGLNGTKATRLLDANHITISKSTLPYDTEKILHGGGIRIGTPAVTTRGMTEAHMTQVADLIDRAL 389          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_CYAP8 (Serine hydroxymethyltransferase OS=Cyanothece sp. (strain PCC 8801) GN=glyA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.561e-22
Identity = 54/115 (46.96%), Postives = 76/115 (66.09%), Query Frame = -3
Query:  457 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG 798
            I A  VA  +A  P FKAY+ QV AN+ AL   L  +G+ LV+GGT+NHL+  DLR +G+TG + ++L    NIT NKN V F   S     G+R+G+PA+T+RG+ E +F++IG
Sbjct:  269 IAAKGVAFGEALKPQFKAYSGQVIANSRALAAQLMERGFKLVSGGTDNHLMLVDLRSIGMTGKEADRLVSEINITANKNTVPFDPESPFVTSGLRLGSPALTTRGMGESEFKEIG 383          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_THELT (Serine hydroxymethyltransferase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=glyA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.957e-22
Identity = 54/127 (42.52%), Postives = 76/127 (59.84%), Query Frame = -3
Query:  421 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLE 798
            I A AV  K+A +  F  Y KQV ANA  L N L+  G  +V+GGT+ HL+  DL PL +TG   EK  + C +TVNKN +  ++ S     G+RIGTPA+T+RG+ EK+ ++I E     +   L+
Sbjct:  265 IAAKAVCFKEAMSSGFVEYQKQVIANAKTLANELSSMGLRIVSGGTDTHLMLVDLTPLNVTGKAAEKALEKCGVTVNKNTIPNETRSPFVASGIRIGTPAVTTRGMREKEMKKIAELIFEVLKNVLD 391          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_PERMH (Serine hydroxymethyltransferase OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=glyA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.957e-22
Identity = 64/165 (38.79%), Postives = 89/165 (53.94%), Query Frame = -3
Query:  307 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDM 798
            I A AVA K+A T  F+ YA Q   NA  L   L  +G  +V+GGT++H+V  DLRPL + GN+ E+     NITVNKNA+ F     +   G+R+GT A+T+RG+ E D  +I               K   K+LK+    L N K I+ +K DV    SS+ +
Sbjct:  264 IAAKAVAFKEAMTEEFREYAHQTVKNAKVLAEELKAEGLRIVSGGTDSHIVLVDLRPLNVKGNQAEEALGRANITVNKNAIPFDPEKPMVTSGIRLGTAALTTRGMKENDMRRIA--------------KNIVKVLKN----LDNEKIIQEVKDDVLSLCSSYPL 410          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_NITWN (Serine hydroxymethyltransferase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=glyA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.957e-22
Identity = 62/134 (46.27%), Postives = 76/134 (56.72%), Query Frame = -3
Query:  400 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGK 798
            I A AVAL +A  P FK YAK V  NA AL   L G G+ +V+GGT+NHL+  DLRP GL GN  EK      +T NKN + F         G+R+GTPA T+RG    +F+Q+G     A  LT   Q E GK
Sbjct:  279 IAAKAVALGEALRPDFKIYAKNVVENARALAESLRGHGFDIVSGGTDNHLMLVDLRPKGLKGNVSEKALVRAGLTCNKNGIPFDPEKPFVTSGLRLGTPATTTRGFGVSEFKQVGGLI--AEVLTAIAQAEDGK 410          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_MICAN (Serine hydroxymethyltransferase OS=Microcystis aeruginosa (strain NIES-843) GN=glyA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.957e-22
Identity = 55/115 (47.83%), Postives = 73/115 (63.48%), Query Frame = -3
Query:  457 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG 798
            + A AVA  +A  P FK Y+ QV ANA AL   L  +G  +VT GT+NHL+  DLR +G+TG + ++L    NIT NKN V F   S     G+R+G+PAMT+RGL E +F +IG
Sbjct:  269 VAAKAVAFGEALKPEFKIYSGQVIANAQALAGQLKARGIKIVTDGTDNHLMLLDLRSVGMTGKEADRLVSTINITANKNTVPFDPESPFVTSGLRLGSPAMTTRGLGETEFIEIG 383          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_DESVV (Serine hydroxymethyltransferase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=glyA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.957e-22
Identity = 62/145 (42.76%), Postives = 80/145 (55.17%), Query Frame = -3
Query:  385 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAV------TLTLEIQKEYGKLLKDF 798
            I A AVA  +A  PAFK Y KQV  NA AL   LT  G+ LV+GGT+NHL+  DL    +TG   E   D   ITVNKN V F   S     GVR+GTPA+T+RG+   + E++G +   A+      T   EI +E  +  + F
Sbjct:  263 IAAKAVAFGEALRPAFKEYQKQVVDNAAALAGVLTAAGFDLVSGGTDNHLMLVDLTSKDVTGKDAEIALDKAGITVNKNTVPFETRSPFVTSGVRLGTPALTTRGMKAAEMEKVGGWIVDAIANTTNETRLAEISREVERFARQF 407          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_DESVH (Serine hydroxymethyltransferase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=glyA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.957e-22
Identity = 62/145 (42.76%), Postives = 80/145 (55.17%), Query Frame = -3
Query:  385 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAV------TLTLEIQKEYGKLLKDF 798
            I A AVA  +A  PAFK Y KQV  NA AL   LT  G+ LV+GGT+NHL+  DL    +TG   E   D   ITVNKN V F   S     GVR+GTPA+T+RG+   + E++G +   A+      T   EI +E  +  + F
Sbjct:  263 IAAKAVAFGEALRPAFKEYQKQVVDNAAALAGVLTAAGFDLVSGGTDNHLMLVDLTSKDVTGKDAEIALDKAGITVNKNTVPFETRSPFVTSGVRLGTPALTTRGMKAAEMEKVGGWIVDAIANTTNETRLAEISREVERFARQF 407          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_SALRD (Serine hydroxymethyltransferase OS=Salinibacter ruber (strain DSM 13855) GN=glyA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.780e-22
Identity = 56/122 (45.90%), Postives = 72/122 (59.02%), Query Frame = -3
Query:  436 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAV 798
            I A AV  K+A  P+F  Y +QV  NA A+G  L  +GY LV+ GT+NHLV  DLR  GLTG + E+  +   IT NKN V F D S     G+R+GTPAMT+RG    +F  + E   R +
Sbjct:  280 IAAKAVGFKEALKPSFAEYTQQVVDNAQAMGAELRERGYDLVSDGTDNHLVLIDLRNKGLTGKEAEQALEAAGITANKNMVPFDDKSPFVTSGLRLGTPAMTTRGFGPDEFAHVAEMIDRVL 401          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_MYXXD (Serine hydroxymethyltransferase OS=Myxococcus xanthus (strain DK 1622) GN=glyA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.780e-22
Identity = 55/122 (45.08%), Postives = 73/122 (59.84%), Query Frame = -3
Query:  436 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAV 798
            I   AVA K+A +P FKAY +Q+ ANA AL   L   G  L +GGT+NHL+  DLRP  LTG   E++ D   ITVNKN + F     +   GVR+GTPA+T+RG+ E +   +G     A+
Sbjct:  266 IAGKAVAFKEALSPEFKAYQRQIVANAKALAEALQRAGLRLTSGGTDNHLMLVDLRPKKLTGKVAEEVLDKAGITVNKNMIPFDPEKPMTTSGVRVGTPAITTRGMREAEMAVVGRLIGEAL 387          
The following BLAST results are available for this feature:
BLAST of CF833115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_DEIRA4.561e-2245.08Serine hydroxymethyltransferase OS=Deinococcus rad... [more]
GLYA_CYAP84.561e-2246.96Serine hydroxymethyltransferase OS=Cyanothece sp. ... [more]
GLYA_THELT5.957e-2242.52Serine hydroxymethyltransferase OS=Thermotoga lett... [more]
GLYA_PERMH5.957e-2238.79Serine hydroxymethyltransferase OS=Persephonella m... [more]
GLYA_NITWN5.957e-2246.27Serine hydroxymethyltransferase OS=Nitrobacter win... [more]
GLYA_MICAN5.957e-2247.83Serine hydroxymethyltransferase OS=Microcystis aer... [more]
GLYA_DESVV5.957e-2242.76Serine hydroxymethyltransferase OS=Desulfovibrio v... [more]
GLYA_DESVH5.957e-2242.76Serine hydroxymethyltransferase OS=Desulfovibrio v... [more]
GLYA_SALRD7.780e-2245.90Serine hydroxymethyltransferase OS=Salinibacter ru... [more]
GLYA_MYXXD7.780e-2245.08Serine hydroxymethyltransferase OS=Myxococcus xant... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03A20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833115 ID=CF833115; Name=CF833115; organism=Citrus sinensis; type=EST; length=800bp
TTTTTTTTTTTTTTTTTAAGAAATAAAATACATAAATTTGTTCTTTTATT
TGTAGATGAACAATCATCATTTGACCAAAGAGAAACGGATCTCACTTTCA
CAATATGGTGGGTACCAATTAAAAAAAAAAAAAAAGTTAAAACGAAAGCG
TTTAAACCTAGGACAACAAAAGGCAAAGATGCATGCAATTTTTTTTCTTC
TCTTTCTGTTTTTCAACACTAAAGAGTTGCTAACAACACAGTAACAATAA
TGATGATACTTTGAGACCTAATCCTTGTACTTCATCTCGGACATTTTAAA
GCCGGGCATGTCAAATGAGCTGGCGAACTTCTCAACATCAGCCTTGAGGG
CCTCGATGTCCTTGTTGTTCACCAAACCCTTGTTGAAGTCCTTCAAGAGC
TTTCCATACTCCTTTTGAATTTCCAACGTGAGGGTCACAGCGCGGTGAAA
AAACTCTCCAATTTGCTCGAAGTCCTTCTCCAACAAACCTCTGGAAGTCA
TGGCAGGAGTACCGATTCTTACTCCTCCAGGGGCCAAGGCACTGCTGTCA
CCAAACACAGCATTCTTGTTCACAGTAATGTTGCAAAGGTCACAGAGCTT
CTCAACCTTATTGCCAGTCAATCCAAGAGGGCGTAAATCCCAAAAAACAA
GGTGGTTCTCAGTTCCACCAGTGACAAGGCTGTATCCCTTGCCCGTCAGG
TAGTTCCCAAGTGCAACTGCATTGGCCTTGACTTGTTTCGCATAGGCCTT
GAATGCAGGGGTCGAGGCCTGTTTCAGGGCAACAGCTAGAGCACCAATCT
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