CF833115

Overview
NameCF833115
Unique NameCF833115
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_CHLCH (Serine hydroxymethyltransferase OS=Chlorobium chlorochromatii (strain CaD3) GN=glyA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.780e-22
Identity = 56/123 (45.53%), Postives = 73/123 (59.35%), Query Frame = -3
Query:  433 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVT 798
            I   AVA  +A  PAFK YA QV  NA  + +     GY++V+GGT+NHL+  DLR   +TG + E L     ITVNKN V F D S     G+RIGTPAMT+RG+ E +  +I E   + +T
Sbjct:  284 IAGKAVAFGEALQPAFKEYAAQVMKNASTMASRFMELGYTIVSGGTKNHLMLLDLRNKNVTGKEAENLLHEAGITVNKNMVPFDDKSPFVTSGIRIGTPAMTTRGMKEAESRRIAELIDQVIT 406          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_BACHD (Serine hydroxymethyltransferase OS=Bacillus halodurans GN=glyA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.780e-22
Identity = 60/127 (47.24%), Postives = 76/127 (59.84%), Query Frame = -3
Query:  421 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLE 798
            I A AVA  +A  P FK+Y + +  NA  LG  LT +G  LV+GGT+NHL+  DLR LGLTG   EK  D   IT NKN + F   S     G+RIGT A+TSRGL E+  ++IG      + LTL+
Sbjct:  263 IAAKAVAFGEALQPEFKSYGEAIIRNAKRLGEKLTSEGIDLVSGGTDNHLLLLDLRSLGLTGKVAEKALDDVGITTNKNTIPFDPESPFVTSGIRIGTAAVTSRGLDEEAMDEIG----ATIALTLK 385          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_SYNWW (Serine hydroxymethyltransferase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=glyA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.016e-21
Identity = 59/143 (41.26%), Postives = 83/143 (58.04%), Query Frame = -3
Query:  391 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTL------EIQKEYGKLLK 798
            I A AV  K+A TP FKAY + +  NA  L   L  +G  +V+GGT+NHL+  D+RP GL G   E + +  NITVNKNA+ F         G+R+GTPA+TSR L   D  ++     RA+TL L      E+++E  +++K
Sbjct:  267 IAAKAVCFKEALTPEFKAYQQDIVNNAAILAKALMEQGLRVVSGGTDNHLMLVDVRPKGLNGRDAEAILESINITVNKNAIPFDPEKPTVTSGIRVGTPAVTSRALKGDDMRELA----RAITLVLDKHDSEEVKEEARRIVK 405          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_LYSSC (Serine hydroxymethyltransferase OS=Lysinibacillus sphaericus (strain C3-41) GN=glyA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.016e-21
Identity = 53/115 (46.09%), Postives = 71/115 (61.74%), Query Frame = -3
Query:  457 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG 798
            I A AVA  +   P FK YAKQ+K NA AL   L  +G  +V+GGT+NHL+  +++ LGLTG   E   D   IT NKN + +   S     G+RIGTPA+TSRG  E+D +++G
Sbjct:  265 IAAKAVAFGEVLQPEFKDYAKQIKLNAKALAEVLIAEGVEIVSGGTDNHLLLLNVKSLGLTGKVAEHALDEVGITTNKNTIPYDTESPFVTSGIRIGTPAVTSRGFKEEDMKEVG 379          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_GEOBB (Serine hydroxymethyltransferase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=glyA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.016e-21
Identity = 57/117 (48.72%), Postives = 69/117 (58.97%), Query Frame = -3
Query:  451 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEF 798
            I A AVA K+A TP FK Y  Q+  NA AL   LT +G+ L +GGT+NHL+  DL    LTG   E+  D   ITVNKN + F   S     G+RIGTPA TS GL E + EQ+  F
Sbjct:  263 IAAKAVAFKEALTPEFKQYQGQIVKNAKALAEGLTKRGFKLTSGGTDNHLMLVDLSQTELTGKVAEEALDRAGITVNKNGIPFDTRSPFITSGIRIGTPAATSHGLKEAEMEQVAGF 379          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_OCEIH (Serine hydroxymethyltransferase OS=Oceanobacillus iheyensis GN=glyA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.327e-21
Identity = 58/135 (42.96%), Postives = 82/135 (60.74%), Query Frame = -3
Query:  397 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKL 798
            I A AV+ K+A +  FKAY+KQ+ ANA  LG  L  +G  +V+GGT+NHL+  D+ PL LTG   EK  D   IT NKN + F   S     G+RIGT A+T+RG  E++ ++I       ++LTL+  ++  KL
Sbjct:  263 IAAKAVSFKEALSDDFKAYSKQIVANAKLLGEALNKEGIRIVSGGTDNHLLLLDVTPLQLTGKVAEKALDDIGITTNKNTIPFDQESPFVTSGIRIGTAAVTTRGFGEEEMKEIASI----ISLTLKHHEDEAKL 393          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_GLUOX (Serine hydroxymethyltransferase OS=Gluconobacter oxydans GN=glyA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.327e-21
Identity = 53/127 (41.73%), Postives = 75/127 (59.06%), Query Frame = -3
Query:  421 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLE 798
            I   AVA  +A +  FKAY K+V ANA AL + L  +G+ +VTGGT++HL+  DLRP  +TG   E + +   IT NKNA+ F         G+R+G+PA T+RG  E +F ++G      +T  LE
Sbjct:  278 IAGKAVAFGEALSDEFKAYQKRVLANARALADELQNRGFDIVTGGTDSHLILVDLRPKKVTGKLAEAILERAGITANKNAIPFDPEKPFVTSGIRLGSPAATARGFGEAEFREVGRMIDEVLTAALE 404          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_FERNB (Serine hydroxymethyltransferase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=glyA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.327e-21
Identity = 59/153 (38.56%), Postives = 89/153 (58.17%), Query Frame = -3
Query:  343 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALK 798
            I A AV  K+A +  FKAY  Q+  NA AL   L  +G  +V+GGT+ HL+  DL PL +TG   E     C+ITVNKN +  ++ S     G+R+GTPA+T+RG+ E+  E+I +     VT+   ++ E G + ++  K  V+++ IE  K
Sbjct:  265 IAAKAVCFKEALSDEFKAYQNQIVKNAKALAKALENRGLRIVSGGTDTHLMLVDLNPLNVTGKAAETALGYCHITVNKNTIPNETRSPFVASGIRLGTPALTTRGMKEEQMEEIADLI---VTVLKNVKDEEGNVDEEVAK-RVSDRVIELCK 413          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_DESAP (Serine hydroxymethyltransferase OS=Desulforudis audaxviator (strain MP104C) GN=glyA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.733e-21
Identity = 60/131 (45.80%), Postives = 77/131 (58.78%), Query Frame = -3
Query:  409 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKE 798
            I A AVAL +A  P FK Y +Q+  NA AL   L  +G+ LV GGT+ HL+  DLR  GLTG   E L D  ++TVNKN V F         G+RIGTPA+T+RG+ E    QI E     ++LTL+  +E
Sbjct:  266 IAAKAVALGEAQRPEFKTYQEQIVKNARALAQALQERGFELVAGGTDTHLILVDLRNKGLTGAVAEDLLDRVDVTVNKNMVPFDPQPPRVTSGIRIGTPAVTTRGMKEDSMVQIAE----VISLTLDHPEE 392          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_ACIBL (Serine hydroxymethyltransferase OS=Acidobacteria bacterium (strain Ellin345) GN=glyA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.733e-21
Identity = 52/115 (45.22%), Postives = 73/115 (63.48%), Query Frame = -3
Query:  457 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG 798
            I A AV  K+A  P+FK YA QV ANA  L   L  +G+ +++GGT+ HL+  D+   G+ G++ EK      ITVNKNA+ F  +  + P GVRIGTPA+T+RG+ E +  Q+G
Sbjct:  268 IAAKAVCFKEAMEPSFKDYANQVVANAKVLAQSLADQGFRIISGGTDTHLMLIDVFAAGMLGSEAEKALGEAGITVNKNAIPFDTNPPMKPSGVRIGTPALTTRGMKEPEMRQVG 382          
The following BLAST results are available for this feature:
BLAST of CF833115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_CHLCH7.780e-2245.53Serine hydroxymethyltransferase OS=Chlorobium chlo... [more]
GLYA_BACHD7.780e-2247.24Serine hydroxymethyltransferase OS=Bacillus halodu... [more]
GLYA_SYNWW1.016e-2141.26Serine hydroxymethyltransferase OS=Syntrophomonas ... [more]
GLYA_LYSSC1.016e-2146.09Serine hydroxymethyltransferase OS=Lysinibacillus ... [more]
GLYA_GEOBB1.016e-2148.72Serine hydroxymethyltransferase OS=Geobacter bemid... [more]
GLYA_OCEIH1.327e-2142.96Serine hydroxymethyltransferase OS=Oceanobacillus ... [more]
GLYA_GLUOX1.327e-2141.73Serine hydroxymethyltransferase OS=Gluconobacter o... [more]
GLYA_FERNB1.327e-2138.56Serine hydroxymethyltransferase OS=Fervidobacteriu... [more]
GLYA_DESAP1.733e-2145.80Serine hydroxymethyltransferase OS=Desulforudis au... [more]
GLYA_ACIBL1.733e-2145.22Serine hydroxymethyltransferase OS=Acidobacteria b... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03A20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833115 ID=CF833115; Name=CF833115; organism=Citrus sinensis; type=EST; length=800bp
TTTTTTTTTTTTTTTTTAAGAAATAAAATACATAAATTTGTTCTTTTATT
TGTAGATGAACAATCATCATTTGACCAAAGAGAAACGGATCTCACTTTCA
CAATATGGTGGGTACCAATTAAAAAAAAAAAAAAAGTTAAAACGAAAGCG
TTTAAACCTAGGACAACAAAAGGCAAAGATGCATGCAATTTTTTTTCTTC
TCTTTCTGTTTTTCAACACTAAAGAGTTGCTAACAACACAGTAACAATAA
TGATGATACTTTGAGACCTAATCCTTGTACTTCATCTCGGACATTTTAAA
GCCGGGCATGTCAAATGAGCTGGCGAACTTCTCAACATCAGCCTTGAGGG
CCTCGATGTCCTTGTTGTTCACCAAACCCTTGTTGAAGTCCTTCAAGAGC
TTTCCATACTCCTTTTGAATTTCCAACGTGAGGGTCACAGCGCGGTGAAA
AAACTCTCCAATTTGCTCGAAGTCCTTCTCCAACAAACCTCTGGAAGTCA
TGGCAGGAGTACCGATTCTTACTCCTCCAGGGGCCAAGGCACTGCTGTCA
CCAAACACAGCATTCTTGTTCACAGTAATGTTGCAAAGGTCACAGAGCTT
CTCAACCTTATTGCCAGTCAATCCAAGAGGGCGTAAATCCCAAAAAACAA
GGTGGTTCTCAGTTCCACCAGTGACAAGGCTGTATCCCTTGCCCGTCAGG
TAGTTCCCAAGTGCAACTGCATTGGCCTTGACTTGTTTCGCATAGGCCTT
GAATGCAGGGGTCGAGGCCTGTTTCAGGGCAACAGCTAGAGCACCAATCT
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