CF833115

Overview
NameCF833115
Unique NameCF833115
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYC_ENCCU (Serine hydroxymethyltransferase, cytosolic OS=Encephalitozoon cuniculi GN=SHMT-1 PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.264e-21
Identity = 50/127 (39.37%), Postives = 78/127 (61.42%), Query Frame = -3
Query:  418 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEI 798
            I  +A AL  A TP F  Y ++V  N+  L + L   G  ++TGGT+NH++  DLR  G+ G  VE +CD   I++N+NA+ G+SS L+P G+R+GT A+T+RG   ++  ++G+     V L  E+
Sbjct:  290 IAGIASALLHAGTPEFAEYTRRVVENSRELCSRLQSLGLDILTGGTDNHMLLVDLRSTGVDGAAVEHMCDALGISLNRNAIVGNSSPLSPSGIRVGTYAVTARGFGPEEMREVGDIIGGVVKLCREM 416          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_RHOP5 (Serine hydroxymethyltransferase OS=Rhodopseudomonas palustris (strain BisA53) GN=glyA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.264e-21
Identity = 55/115 (47.83%), Postives = 68/115 (59.13%), Query Frame = -3
Query:  457 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG 798
            I A AVA K+A  P FK YAK V  NA AL   L G G+ +V+GGT+NHL+  DLRP  L GN  EK      IT NKN + F         G+R+GTPA T+RG    +F+Q+G
Sbjct:  279 IAAKAVAFKEALQPDFKVYAKNVVENAKALAETLRGHGFDIVSGGTDNHLMLVDLRPKALKGNVSEKALVRAGITCNKNGIPFDPEKPFVTSGIRLGTPAATTRGFGVAEFQQVG 393          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_PETMO (Serine hydroxymethyltransferase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=glyA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.264e-21
Identity = 61/152 (40.13%), Postives = 87/152 (57.24%), Query Frame = -3
Query:  346 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEAL 798
            I A AVA K+A +  FK Y KQV  N+ AL N L  K   +V+GGT+ HL   DL  L +TG  +EK    C+ITVNKN V  ++ S     G+RIGTPA+T+RG+ E++ ++I     +     L+   E G + KD  + +   KD+ +L
Sbjct:  265 IAAKAVAFKEAMSGEFKEYQKQVVRNSKALSNELASKNLRIVSGGTDTHLFLVDLSELNITGKALEKALGQCDITVNKNTVPKETLSPFVTSGIRIGTPAVTTRGMKEEEMKEIASMIAKVANNVLD---EEGNIDKDLAQEI--KKDVVSL 411          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_GEOLS (Serine hydroxymethyltransferase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=glyA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.264e-21
Identity = 60/145 (41.38%), Postives = 76/145 (52.41%), Query Frame = -3
Query:  385 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVT------LTLEIQKEYGKLLKDF 798
            I A AVA K+A  P FK Y +Q+  NA  L   L  KG+ L +GGT+NHL+  +     +TG   E+  D   ITVNKN V F   S     G+R+GTPA TS GL E + EQ+  F   AV           IQK   +L+K F
Sbjct:  263 IAAKAVAFKEALQPEFKTYQQQIVKNAAKLAECLMAKGFKLTSGGTDNHLMLINFTGTEITGKAAEEALDKAGITVNKNTVPFETRSPFVTSGIRVGTPACTSHGLKETEMEQVAGFIADAVANIGNDEALAAIQKRVNELMKKF 407          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_CLOTH (Serine hydroxymethyltransferase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=glyA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.264e-21
Identity = 55/123 (44.72%), Postives = 74/123 (60.16%), Query Frame = -3
Query:  433 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVT 798
            I A AV+  +  T  FK Y +Q+  NA  L N L  KG  LV+GGT+NHL+  DLR  GLTG  V+ + D   ITVNKN + F   S     G+RIGTPA+T+RG+ E+D  +I +  +  +T
Sbjct:  266 IAAKAVSFAEVLTDEFKQYQQQIVKNAKTLANALMEKGIDLVSGGTDNHLMLVDLRNKGLTGKYVQHILDEVCITVNKNGIPFDPESPFVTSGIRIGTPAVTARGMKEEDMVEIADLINLTIT 388          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_ALKMQ (Serine hydroxymethyltransferase OS=Alkaliphilus metalliredigens (strain QYMF) GN=glyA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.264e-21
Identity = 55/114 (48.25%), Postives = 73/114 (64.04%), Query Frame = -3
Query:  460 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQI 798
            I A AVA K+A  P FKAY +QV  NA ALG  L  +G+ LV+ GT+ HL+  DLR   +TG   E+L D   ITVNKN + F   S     G+RIGTPA+T+RG+ E++ ++I
Sbjct:  265 IAAKAVAFKEALEPGFKAYQEQVIKNAKALGEELKKQGFDLVSDGTDTHLLLIDLRNKNITGKDAERLFDEVGITVNKNTIPFDPQSPFVTSGIRIGTPAVTTRGMKEEEMKKI 378          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_THET8 (Serine hydroxymethyltransferase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=glyA PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.956e-21
Identity = 55/122 (45.08%), Postives = 71/122 (58.20%), Query Frame = -3
Query:  436 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAV 798
            I   AVA  +A  P FK Y++ V  NA  L   L  +GY +VTGGT+NHL   DLRP GLTG + E+  D   ITVNKNA+ F         G+RIGTPA+T+RG   ++   + E   RA+
Sbjct:  264 IAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARRGYRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRAL 385          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_THET2 (Serine hydroxymethyltransferase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=glyA PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.956e-21
Identity = 55/122 (45.08%), Postives = 71/122 (58.20%), Query Frame = -3
Query:  436 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAV 798
            I   AVA  +A  P FK Y++ V  NA  L   L  +GY +VTGGT+NHL   DLRP GLTG + E+  D   ITVNKNA+ F         G+RIGTPA+T+RG   ++   + E   RA+
Sbjct:  264 IAGKAVAFFEALQPEFKEYSRLVVENAKRLAEALARRGYRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRAL 385          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_THEP1 (Serine hydroxymethyltransferase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=glyA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.956e-21
Identity = 56/146 (38.36%), Postives = 81/146 (55.48%), Query Frame = -3
Query:  388 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAV--------TLTLEIQKEYGKLLKD 798
            I A AV  K+A T  FK Y KQV  NA  +      +GY +V+GGT+ HL   DL P  +TG   EK  + C ITVNKN +  +  S     G+RIGTPA+T+RG+ E++ E+I E     +        T+  E+++E  K +++
Sbjct:  265 IAAKAVCFKEAMTEEFKEYQKQVVKNAKKMAEEFQKRGYRIVSGGTDTHLFLVDLTPKDITGKAAEKALESCGITVNKNTIPNEKRSPFVASGIRIGTPAVTTRGMKEEEMEEIAEMIDLVLSNVTDENGTVKPEVREEVSKRVRE 410          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_THEMA (Serine hydroxymethyltransferase OS=Thermotoga maritima GN=glyA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.956e-21
Identity = 56/146 (38.36%), Postives = 81/146 (55.48%), Query Frame = -3
Query:  388 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAV--------TLTLEIQKEYGKLLKD 798
            I A AV  K+A T  FK Y KQV  NA  +      +GY +V+GGT+ HL   DL P  +TG   EK  + C ITVNKN +  +  S     G+RIGTPA+T+RG+ E++ E+I E     +        T+  E+++E  K +++
Sbjct:  265 IAAKAVCFKEAMTEEFKEYQKQVVKNAKKMAEEFQKRGYRIVSGGTDTHLFLVDLTPKDITGKAAEKALESCGITVNKNTIPNEKRSPFVASGIRIGTPAVTTRGMKEEEMEEIAEMIDLVLSNVIDENGTVKPEVREEVSKKVRE 410          
The following BLAST results are available for this feature:
BLAST of CF833115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC_ENCCU2.264e-2139.37Serine hydroxymethyltransferase, cytosolic OS=Ence... [more]
GLYA_RHOP52.264e-2147.83Serine hydroxymethyltransferase OS=Rhodopseudomona... [more]
GLYA_PETMO2.264e-2140.13Serine hydroxymethyltransferase OS=Petrotoga mobil... [more]
GLYA_GEOLS2.264e-2141.38Serine hydroxymethyltransferase OS=Geobacter lovle... [more]
GLYA_CLOTH2.264e-2144.72Serine hydroxymethyltransferase OS=Clostridium the... [more]
GLYA_ALKMQ2.264e-2148.25Serine hydroxymethyltransferase OS=Alkaliphilus me... [more]
GLYA_THET82.956e-2145.08Serine hydroxymethyltransferase OS=Thermus thermop... [more]
GLYA_THET22.956e-2145.08Serine hydroxymethyltransferase OS=Thermus thermop... [more]
GLYA_THEP12.956e-2138.36Serine hydroxymethyltransferase OS=Thermotoga petr... [more]
GLYA_THEMA2.956e-2138.36Serine hydroxymethyltransferase OS=Thermotoga mari... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03A20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833115 ID=CF833115; Name=CF833115; organism=Citrus sinensis; type=EST; length=800bp
TTTTTTTTTTTTTTTTTAAGAAATAAAATACATAAATTTGTTCTTTTATT
TGTAGATGAACAATCATCATTTGACCAAAGAGAAACGGATCTCACTTTCA
CAATATGGTGGGTACCAATTAAAAAAAAAAAAAAAGTTAAAACGAAAGCG
TTTAAACCTAGGACAACAAAAGGCAAAGATGCATGCAATTTTTTTTCTTC
TCTTTCTGTTTTTCAACACTAAAGAGTTGCTAACAACACAGTAACAATAA
TGATGATACTTTGAGACCTAATCCTTGTACTTCATCTCGGACATTTTAAA
GCCGGGCATGTCAAATGAGCTGGCGAACTTCTCAACATCAGCCTTGAGGG
CCTCGATGTCCTTGTTGTTCACCAAACCCTTGTTGAAGTCCTTCAAGAGC
TTTCCATACTCCTTTTGAATTTCCAACGTGAGGGTCACAGCGCGGTGAAA
AAACTCTCCAATTTGCTCGAAGTCCTTCTCCAACAAACCTCTGGAAGTCA
TGGCAGGAGTACCGATTCTTACTCCTCCAGGGGCCAAGGCACTGCTGTCA
CCAAACACAGCATTCTTGTTCACAGTAATGTTGCAAAGGTCACAGAGCTT
CTCAACCTTATTGCCAGTCAATCCAAGAGGGCGTAAATCCCAAAAAACAA
GGTGGTTCTCAGTTCCACCAGTGACAAGGCTGTATCCCTTGCCCGTCAGG
TAGTTCCCAAGTGCAACTGCATTGGCCTTGACTTGTTTCGCATAGGCCTT
GAATGCAGGGGTCGAGGCCTGTTTCAGGGCAACAGCTAGAGCACCAATCT
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