CF833115

Overview
NameCF833115
Unique NameCF833115
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_PROA2 (Serine hydroxymethyltransferase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=glyA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.956e-21
Identity = 57/122 (46.72%), Postives = 70/122 (57.38%), Query Frame = -3
Query:  436 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAV 798
            I A AVA  +A  P FK YA QV+ANA A+        Y++V+GGT+NHL+  DLR   +TG   E L     ITVNKN V F D S     G+RIGTPAMT+RG+ E   E I     R +
Sbjct:  284 IAAKAVAFGEALQPEFKEYAVQVRANAAAMAQKFISLDYNIVSGGTKNHLMLIDLRNKNVTGKVAENLLHEAGITVNKNMVPFDDKSPFVTSGIRIGTPAMTTRGMTESHAEAIVSLIDRVI 405          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_RICM5 (Serine hydroxymethyltransferase OS=Rickettsia massiliae (strain Mtu5) GN=glyA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.861e-21
Identity = 61/156 (39.10%), Postives = 84/156 (53.85%), Query Frame = -3
Query:  334 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADV 798
            I A AVA  +   P +K+Y +QV +NA AL + L  +GY ++TGGT+NH+V  DLR  G+TG       D   IT NKNA+ F ++S     G+R+GTPA T+RG  EKDF  +                  G ++ D   GL NN+D   L+  V
Sbjct:  268 IAAKAVAFLENLQPEYKSYIQQVISNAKALASSLQERGYDILTGGTDNHIVLVDLRKDGITGKFAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLV------------------GYMVADILDGLKNNEDNSDLEQKV 405          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_RHOP2 (Serine hydroxymethyltransferase OS=Rhodopseudomonas palustris (strain HaA2) GN=glyA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.861e-21
Identity = 56/115 (48.70%), Postives = 68/115 (59.13%), Query Frame = -3
Query:  457 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG 798
            I A AVA K+A  P FK YAK V  NA AL   L   G+ LV+GGT+NHL+  DLRP GL GN  EK      IT NKN + F         G+R+GTPA T+RG    +F+Q+G
Sbjct:  279 IAAKAVAFKEALQPDFKVYAKNVVENAKALAETLRAAGFDLVSGGTDNHLMLVDLRPKGLKGNVSEKALVRAAITCNKNGIPFDPEKPFVTSGLRLGTPAATTRGFGVAEFQQVG 393          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_HYPME (Serine hydroxymethyltransferase OS=Hyphomicrobium methylovorum GN=glyA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.861e-21
Identity = 55/115 (47.83%), Postives = 69/115 (60.00%), Query Frame = -3
Query:  457 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG 798
            I   AVA  +A  P FK Y KQV  NA ALG  L   G++LV+GGT+ HLV  DLRP  LTG K EK     NIT NKN + F     +   G+R+G+PA T+RG    +F++IG
Sbjct:  280 IAGKAVAFGEALRPDFKVYIKQVMDNARALGEVLVQNGFALVSGGTDTHLVLVDLRPKKLTGTKAEKALGRANITCNKNGIPFDPEKPMVTSGIRLGSPAGTTRGFGVAEFQEIG 394          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_CHLP8 (Serine hydroxymethyltransferase OS=Chlorobaculum parvum (strain NCIB 8327) GN=glyA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.861e-21
Identity = 55/123 (44.72%), Postives = 72/123 (58.54%), Query Frame = -3
Query:  433 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVT 798
            I   AVA  +A  P FKAYA+Q+K NA A+        Y +V+GGT+NHL+  DLR   + G   E L     ITVNKN V F D S     G+R+GTPAMT+RG+   + E+I EF  R ++
Sbjct:  284 IAGKAVAFGEALQPEFKAYAQQIKDNAAAMAAKFLAADYHIVSGGTKNHLMLLDLRNKNVNGKVAENLLHDAGITVNKNMVPFDDKSPFVTSGIRVGTPAMTTRGMKVAEAEKIVEFIDRVIS 406          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_BORRA (Serine hydroxymethyltransferase OS=Borrelia recurrentis (strain A1) GN=glyA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.861e-21
Identity = 61/166 (36.75%), Postives = 84/166 (50.60%), Query Frame = -3
Query:  304 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMP 798
            I   AVA K+A    FK Y  +V  N  A+  Y   +G  +V+GGT+NHL   DL  LG+TG   EK+ +  NIT+NKNA+ F   +     G+RIG PA+TSRGL   D  ++  F  RA+                      +  ++  +K +V  F SSFDMP
Sbjct:  271 IAGKAVAFKEALNKEFKDYISRVIENTKAMAEYFISEGLRIVSGGTDNHLFLVDLSGLGITGADAEKILESVNITLNKNAIPFDSKNPSVASGIRIGAPAITSRGLNRDDSIKVAHFIIRALKTK-------------------STDELRKIKQEVIGFISSFDMP 417          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_BORDL (Serine hydroxymethyltransferase OS=Borrelia duttonii (strain Ly) GN=glyA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.861e-21
Identity = 61/166 (36.75%), Postives = 84/166 (50.60%), Query Frame = -3
Query:  304 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMP 798
            I   AVA K+A    FK Y  +V  N  A+  Y   +G  +V+GGT+NHL   DL  LG+TG   EK+ +  NIT+NKNA+ F   +     G+RIG PA+TSRGL   D  ++  F  RA+                      +  ++  +K +V  F SSFDMP
Sbjct:  271 IAGKAVAFKEALNKEFKDYISRVIENTKAMAEYFISEGLRIVSGGTDNHLFLVDLSGLGITGADAEKILESVNITLNKNAIPFDSKNPSVASGIRIGAPAITSRGLNRDDSIKVAHFIIRALKTK-------------------STDELRKIKQEVIGFISSFDMP 417          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA2_RALSO (Serine hydroxymethyltransferase 2 OS=Ralstonia solanacearum GN=glyA2 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.861e-21
Identity = 56/115 (48.70%), Postives = 67/115 (58.26%), Query Frame = -3
Query:  457 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG 798
            I   AVA  +A  P FK Y   V ANA ALG  L   G  LVTGGT+NHL+  DLRP GL G +VE+  +   IT NKN + F         G+R+GTPA T+RG    +FEQIG
Sbjct:  272 IAGKAVAFGEALKPEFKTYIDSVLANAKALGEVLKAGGVDLVTGGTDNHLLLVDLRPKGLKGTQVEQALERAGITCNKNGIPFDTEKPTITSGIRLGTPAATTRGFGVAEFEQIG 386          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_SULSY (Serine hydroxymethyltransferase OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=glyA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.043e-21
Identity = 64/165 (38.79%), Postives = 89/165 (53.94%), Query Frame = -3
Query:  307 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDM 798
            I A AVA  +A T  FK YA+QV  NA AL   L  +G  +V+GGT++H++  DLRPL + GN+ E+     NITVNKNA+ F         G+R+GT A+T+RG+ E D  +I               K   K+LK+    L N K I+  + DV    SS+ +
Sbjct:  264 IAAKAVAFGEALTEDFKKYAEQVVKNARALAEELMAEGLRIVSGGTDSHMMLVDLRPLNVKGNQAEEALGKANITVNKNAIPFDPEKPTVTSGIRLGTAALTTRGMKENDMRRIA--------------KNIVKVLKN----LDNEKVIQEARDDVLSLCSSYPL 410          
BLAST of CF833115 vs. ExPASy Swiss-Prot
Match: GLYA_SILST (Serine hydroxymethyltransferase OS=Silicibacter sp. (strain TM1040) GN=glyA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.043e-21
Identity = 54/122 (44.26%), Postives = 72/122 (59.02%), Query Frame = -3
Query:  436 IGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVFWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFFHRAV 798
            I   A A  +A  P FK+Y KQV+ANAVAL + L   G  +VTGGT+ H++  DLRP G+TGN V+K     +IT NKN + F         G+R+GTPA T+RG  E++F +I       V
Sbjct:  275 IAGKAAAFGEALKPEFKSYQKQVRANAVALADELIKGGLDIVTGGTDTHVMLVDLRPKGVTGNIVDKALGRAHITTNKNGIPFDPEKPTVTSGIRLGTPAGTTRGFGEEEFREIARLIVEVV 396          
The following BLAST results are available for this feature:
BLAST of CF833115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_PROA22.956e-2146.72Serine hydroxymethyltransferase OS=Prosthecochlori... [more]
GLYA_RICM53.861e-2139.10Serine hydroxymethyltransferase OS=Rickettsia mass... [more]
GLYA_RHOP23.861e-2148.70Serine hydroxymethyltransferase OS=Rhodopseudomona... [more]
GLYA_HYPME3.861e-2147.83Serine hydroxymethyltransferase OS=Hyphomicrobium ... [more]
GLYA_CHLP83.861e-2144.72Serine hydroxymethyltransferase OS=Chlorobaculum p... [more]
GLYA_BORRA3.861e-2136.75Serine hydroxymethyltransferase OS=Borrelia recurr... [more]
GLYA_BORDL3.861e-2136.75Serine hydroxymethyltransferase OS=Borrelia dutton... [more]
GLYA2_RALSO3.861e-2148.70Serine hydroxymethyltransferase 2 OS=Ralstonia sol... [more]
GLYA_SULSY5.043e-2138.79Serine hydroxymethyltransferase OS=Sulfurihydrogen... [more]
GLYA_SILST5.043e-2144.26Serine hydroxymethyltransferase OS=Silicibacter sp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03A20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833115 ID=CF833115; Name=CF833115; organism=Citrus sinensis; type=EST; length=800bp
TTTTTTTTTTTTTTTTTAAGAAATAAAATACATAAATTTGTTCTTTTATT
TGTAGATGAACAATCATCATTTGACCAAAGAGAAACGGATCTCACTTTCA
CAATATGGTGGGTACCAATTAAAAAAAAAAAAAAAGTTAAAACGAAAGCG
TTTAAACCTAGGACAACAAAAGGCAAAGATGCATGCAATTTTTTTTCTTC
TCTTTCTGTTTTTCAACACTAAAGAGTTGCTAACAACACAGTAACAATAA
TGATGATACTTTGAGACCTAATCCTTGTACTTCATCTCGGACATTTTAAA
GCCGGGCATGTCAAATGAGCTGGCGAACTTCTCAACATCAGCCTTGAGGG
CCTCGATGTCCTTGTTGTTCACCAAACCCTTGTTGAAGTCCTTCAAGAGC
TTTCCATACTCCTTTTGAATTTCCAACGTGAGGGTCACAGCGCGGTGAAA
AAACTCTCCAATTTGCTCGAAGTCCTTCTCCAACAAACCTCTGGAAGTCA
TGGCAGGAGTACCGATTCTTACTCCTCCAGGGGCCAAGGCACTGCTGTCA
CCAAACACAGCATTCTTGTTCACAGTAATGTTGCAAAGGTCACAGAGCTT
CTCAACCTTATTGCCAGTCAATCCAAGAGGGCGTAAATCCCAAAAAACAA
GGTGGTTCTCAGTTCCACCAGTGACAAGGCTGTATCCCTTGCCCGTCAGG
TAGTTCCCAAGTGCAACTGCATTGGCCTTGACTTGTTTCGCATAGGCCTT
GAATGCAGGGGTCGAGGCCTGTTTCAGGGCAACAGCTAGAGCACCAATCT
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