CF833118

Overview
NameCF833118
Unique NameCF833118
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833118 vs. ExPASy Swiss-Prot
Match: CATB_HUMAN (Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.453e-15
Identity = 32/66 (48.48%), Postives = 48/66 (72.73%), Query Frame = -2
Query:  284 LGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGFPSSKNLVKEI 481
            +GGHA++++GWG  ++G  YW++AN WN  WG +G+FKI RG + CGIE +VVAG P +    ++I
Sbjct:  275 MGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYWEKI 339          
BLAST of CF833118 vs. ExPASy Swiss-Prot
Match: CATB_MOUSE (Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.203e-15
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = -2
Query:  311 LGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGFP 481
            +GGHA++++GWG  ++G  YW+ AN WN  WG +G+FKI RG N CGIE ++VAG P
Sbjct:  275 MGGHAIRILGWGV-ENGVPYWLAANSWNLDWGDNGFFKILRGENHCGIESEIVAGIP 330          
BLAST of CF833118 vs. ExPASy Swiss-Prot
Match: CATB_PIG (Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.217e-14
Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = -2
Query:  311 LGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGFP 481
            +GGHA++++GWG  ++G  YW++ N WN  WG +G+FKI RG + CGIE ++VAG P
Sbjct:  275 MGGHAIRILGWGV-ENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIESEIVAGIP 330          
BLAST of CF833118 vs. ExPASy Swiss-Prot
Match: CATB_BOVIN (Cathepsin B OS=Bos taurus GN=CTSB PE=1 SV=5)

HSP 1 Score: 80.1073 bits (196), Expect = 1.217e-14
Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = -2
Query:  311 LGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGFP 481
            +GGHA++++GWG  ++G  YW++ N WN  WG +G+FKI RG + CGIE ++VAG P
Sbjct:  275 MGGHAIRILGWGV-ENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIESEIVAGMP 330          
BLAST of CF833118 vs. ExPASy Swiss-Prot
Match: CATB_CHICK (Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.590e-14
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = -2
Query:  311 LGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGFP 481
            +GGHA++++GWG  ++G  YW+ AN WN  WG  G+FKI RG + CGIE ++VAG P
Sbjct:  276 VGGHAIRILGWGV-ENGTPYWLAANSWNTDWGITGFFKILRGEDHCGIESEIVAGVP 331          
BLAST of CF833118 vs. ExPASy Swiss-Prot
Match: CATB1_GIALA (Cathepsin B-like CP1 OS=Giardia lamblia GN=CP1 PE=2 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14
Identity = 30/54 (55.56%), Postives = 42/54 (77.78%), Query Frame = -2
Query:  320 LGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVA 481
            LG HA++++G+GT+DDG DYWI+ N W   WG +GYF+I RG NEC IE+++ A
Sbjct:  246 LGFHALEIVGYGTTDDGTDYWIIKNSWGPDWGENGYFRIVRGVNECRIEDEIYA 299          
BLAST of CF833118 vs. ExPASy Swiss-Prot
Match: CYSP_SCHMA (Cathepsin B-like cysteine proteinase OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.626e-14
Identity = 30/55 (54.55%), Postives = 42/55 (76.36%), Query Frame = -2
Query:  317 LGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAG 481
            LGGHA+++IGWG  ++   YW++AN WN  WG +GYF+I RG +EC IE +V+AG
Sbjct:  284 LGGHAIRIIGWGV-ENKTPYWLIANSWNEDWGENGYFRIVRGRDECSIESEVIAG 337          
BLAST of CF833118 vs. ExPASy Swiss-Prot
Match: CYSP2_HAECO (Cathepsin B-like cysteine proteinase 2 OS=Haemonchus contortus GN=AC-2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.041e-14
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = -2
Query:  296 GGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGFPSSKNL 478
            G HAVK+IGWG +++  D+W++AN W+  WG  GYF+I RGSN+CGIE  + AG   +++L
Sbjct:  283 GYHAVKMIGWG-NENNTDFWLIANSWHNDWGEKGYFRIVRGSNDCGIEGTIAAGIVDTESL 342          
BLAST of CF833118 vs. ExPASy Swiss-Prot
Match: CYSP1_HAECO (Cathepsin B-like cysteine proteinase 1 OS=Haemonchus contortus GN=AC-1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 30/61 (49.18%), Postives = 45/61 (73.77%), Query Frame = -2
Query:  296 GGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGFPSSKNL 478
            G HAVK+IGWG +++  D+W++AN W+  WG  GYF+I RG+N+CGIE  + AG   +++L
Sbjct:  283 GYHAVKMIGWG-NENNTDFWLIANSWHNDWGEKGYFRIIRGTNDCGIEGTIAAGIVDTESL 342          
BLAST of CF833118 vs. ExPASy Swiss-Prot
Match: CATC_MACFA (Dipeptidyl-peptidase 1 OS=Macaca fascicularis GN=CTSC PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = -2
Query:  302 LGGHAVKLIGWGT-SDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGFPSSK 481
            L  HAV L+G+GT S  G DYWI+ N W  SWG DGYF+I+RG++EC IE   VA  P  K
Sbjct:  402 LTNHAVLLVGYGTDSASGMDYWIVKNSWGTSWGEDGYFRIRRGTDECAIESIAVAATPIPK 462          
The following BLAST results are available for this feature:
BLAST of CF833118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
CATB_HUMAN2.453e-1548.48Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3[more]
CATB_MOUSE3.203e-1554.39Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2[more]
CATB_PIG1.217e-1450.88Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1[more]
CATB_BOVIN1.217e-1450.88Cathepsin B OS=Bos taurus GN=CTSB PE=1 SV=5[more]
CATB_CHICK1.590e-1452.63Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1[more]
CATB1_GIALA2.712e-1455.56Cathepsin B-like CP1 OS=Giardia lamblia GN=CP1 PE=... [more]
CYSP_SCHMA4.626e-1454.55Cathepsin B-like cysteine proteinase OS=Schistosom... [more]
CYSP2_HAECO6.041e-1450.82Cathepsin B-like cysteine proteinase 2 OS=Haemonch... [more]
CYSP1_HAECO1.758e-1349.18Cathepsin B-like cysteine proteinase 1 OS=Haemonch... [more]
CATC_MACFA6.679e-1355.74Dipeptidyl-peptidase 1 OS=Macaca fascicularis GN=C... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03A21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03A21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833118 ID=CF833118; Name=CF833118; organism=Citrus sinensis; type=EST; length=689bp
TTTTTTTTTTTTTTTTTGGAGCAATGATGTGACATTTTTCATCTAAACGA
ATAATTCGGCGAGGAGAAACGAAGTTATTACAACTGGTTCTATTTTTACA
CACAACATTAAACTCCATTAATACATTCAATTATGCAAGACGGGAGCTTC
CCATTTCATGCCTTGATAGCTTAGGGTCAACGATACACCCCTATAGCTAC
ACATTTGATATATAAATAACAACATGAAGGGATAGCAAAGTCTGCTCTCA
AGCTGAAGCATCCTCAAACATATCTGCACTTGTAATCTCTTTGACAAGAT
TTTTGGATGAAGGGAAACCAGCAACCACATCCTCTTCAATACCACACTCA
TTTGATCCTCTTTTAATCTTGAAGTAACCATCCGCACCCCAGCTTCTATT
CCACTGATTAGCGAGAATCCAGTAATCCTCGCCATCATCACTAGTTCCCC
AACCAATAAGCTTAACAGCATGACCCCCAAGGAACCGAACGACGCCGTCG
TTTACATCTTCATTTACGTCGTCAACGACAGCAACTCAGCCAAAGCCCGC
CTGGCAACCCAGCAAGCCGTCATGGACTCACCAACCAGCGCAGACCGGGA
TAGAAAGCGCTCCCGTTTCTATGGTGGGTGATATTCATGGCAAGAGTTGG
GCGACTACGGCCCCGTCCAAGTCCAGTTCTGGGATTGGG
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