CF833129

Overview
NameCF833129
Unique NameCF833129
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833129 vs. ExPASy Swiss-Prot
Match: ALAT1_HUMAN (Alanine aminotransferase 1 OS=Homo sapiens GN=GPT PE=1 SV=3)

HSP 1 Score: 211.846 bits (538), Expect = 3.947e-54
Identity = 108/222 (48.65%), Postives = 138/222 (62.16%), Query Frame = -3
Query:  213 DEVYQENVYVPEKKFHSLKKVSRSMG---YGEKDISLVSFQSVSKGYHGECGKRGGYMEVTGFSPEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKSF 869
            DEVYQ+NVY    +FHS KKV   MG    G+++  L SF S SKGY GECG RGGY+EV      V++Q+ K+ SV LC  + GQ L  LV+SPP   D S+  + AE+  +L+ LA +AK  E  FN   GI+CN  +GAMY FPR+QLP             PD F+C RLL  TGI +VPGSGFGQ  GT+HFR TILP  +K+  ++ +L+ FH  F
Sbjct:  272 DEVYQDNVYAAGSQFHSFKKVLMEMGPPYAGQQE--LASFHSTSKGYMGECGFRGGYVEVVNMDAAVQQQMLKLMSVRLCPPVPGQALLDLVVSPPAPTDPSFAQFQAEKQAVLAELAAKAKLTEQVFNEAPGISCNPVQGAMYSFPRVQLPPRAVERAQELGLAPDMFFCLRLLEETGICVVPGSGFGQREGTYHFRMTILPPLEKLRLLLEKLSRFHAKF 491          
BLAST of CF833129 vs. ExPASy Swiss-Prot
Match: ALAT1_MOUSE (Alanine aminotransferase 1 OS=Mus musculus GN=Gpt PE=2 SV=3)

HSP 1 Score: 211.075 bits (536), Expect = 6.733e-54
Identity = 108/225 (48.00%), Postives = 138/225 (61.33%), Query Frame = -3
Query:  201 DEVYQENVYVPEKKFHSLKKVSRSMG--YGEKDISLVSFQSVSKGYHGECGKRGGYMEVTGFSPEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKSFMDKF 869
            DEVYQ+NVY    +FHS KKV   MG  Y  +   L SF SVSKGY GECG RGGY+EV     EV++Q+ K+ SV LC  + GQ L  +V+SPP   + S++ + AER  +L+ LA +AK  E  FN   GI CN  +GAMY FP+IQLP             PD F+C  LL  TGI +VPGSGFGQ  GT+HFR TILP  +K+  ++ +L  FH  F  ++
Sbjct:  272 DEVYQDNVYAEGSQFHSFKKVLTEMGPPYATQQ-ELASFHSVSKGYMGECGFRGGYVEVVNMDAEVQKQMAKLMSVRLCPPVPGQALMGMVVSPPTPSEPSFKQFQAERQEVLAELAAKAKLTEQVFNEAPGIRCNPVQGAMYSFPQIQLPLKAVQRAQDLGLAPDMFFCLCLLEETGICVVPGSGFGQQEGTYHFRMTILPPMEKLRVLLEKLRHFHAKFTHEY 495          
BLAST of CF833129 vs. ExPASy Swiss-Prot
Match: ALAT1_RAT (Alanine aminotransferase 1 OS=Rattus norvegicus GN=Gpt PE=1 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 8.794e-54
Identity = 107/225 (47.56%), Postives = 139/225 (61.78%), Query Frame = -3
Query:  201 DEVYQENVYVPEKKFHSLKKVSRSMG--YGEKDISLVSFQSVSKGYHGECGKRGGYMEVTGFSPEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKSFMDKF 869
            DEVYQ+NVY    +FHS KKV   MG  Y  +   L SF SVSKGY GECG RGGY+EV     EV++Q+ K+ SV LC  + GQ L  +V+SPP   + S++ + AER  +L+ LA +AK  E  FN   GI CN  +GAMY FP++QLP             PD F+C  LL  TGI +VPGSGFGQ  GT+HFR TILP  +K+  ++ +L+ FH  F  ++
Sbjct:  272 DEVYQDNVYAEGSQFHSFKKVLMEMGPPYSTQQ-ELASFHSVSKGYMGECGFRGGYVEVVNMDAEVQKQMGKLMSVRLCPPVPGQALMDMVVSPPTPSEPSFKQFQAERQEVLAELAAKAKLTEQVFNEAPGIRCNPVQGAMYSFPQVQLPLKAVQRAQELGLAPDMFFCLCLLEETGICVVPGSGFGQQEGTYHFRMTILPPMEKLRLLLEKLSHFHAKFTHEY 495          
BLAST of CF833129 vs. ExPASy Swiss-Prot
Match: ALAT_YEAST (Probable alanine aminotransferase OS=Saccharomyces cerevisiae GN=ALT2 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.829e-52
Identity = 107/229 (46.72%), Postives = 143/229 (62.45%), Query Frame = -3
Query:  195 DEVYQENVYVPEKKFHSLKKVSRSMGY---GEKD-ISLVSFQSVSKGYHGECGKRGGYMEVTGFSPEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKSFMDKFRN 869
            DEVYQEN++  + KFHS+KKV R + +   G+ D + L S  S+SKG+  ECG+RGGYME+ GFS E+R+ ++K+ S+++CS ++GQ +  L++ PP+ GDESYE    ER  I   +  RA  L + F  LEGI C K +GAMYLFPR+ LP             PD FYC  LL +TGI  VPGSGFGQ PGT+H R T L    K    +    +FH+ F  K+RN
Sbjct:  283 DEVYQENIF-NDVKFHSMKKVLRKLQHLYPGKFDNVQLASLHSISKGFMDECGQRGGYMEIIGFSQEIRDALFKLMSISICSVVTGQAVVDLMVKPPQPGDESYEQDHDERLKIFHEMRTRANLLYETFKELEGIECQKPQGAMYLFPRLVLPKKALCESERLGIEPDEFYCTSLLESTGICTVPGSGFGQRPGTYHVRTTFLAPGTK---WIQDWKEFHQDFFSKYRN 507          
BLAST of CF833129 vs. ExPASy Swiss-Prot
Match: ALAT_SCHPO (Putative alanine aminotransferase OS=Schizosaccharomyces pombe GN=SPBC582.08 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.685e-39
Identity = 86/228 (37.72%), Postives = 127/228 (55.70%), Query Frame = -3
Query:  201 DEVYQENVYVPEKKFHSLKKVSRSMGYGEKD-----ISLVSFQSVSKGYHGECGKRGGYMEVTGFSPEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESYCAERDGILSSLARRAKTLEDAFNSLEGITCNKAEGAMYLFPRIQLPXXXXXXXXXXKTVPDAFYCRRLLNATGIVLVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTDFHKSFMDKF 869
            DEVYQ N+Y  + KFHS ++    +   E D     +SL+S  SVSKG  GECG+RGGY++V       ++QI K+A++++C  ++GQ+L  ++++PPK GD SY+ +  E D I  +L  + + L +    ++ ++C +  GAMYL P + LP          K  PD FY   LL  +GI +VPGSGFGQ  G +H R T L    K    + R    H   MD +
Sbjct:  282 DEVYQNNIY--QNKFHSFRRKLGELREKEPDNHWDQVSLISVNSVSKGQFGECGQRGGYLDVVNIPEPAKDQILKLATIDICPPVAGQLLVDMLVNPPKPGDPSYDLFIKEVDEIHEALRLQCRQLYEGTKRMKRVSCLEPHGAMYLHPSVSLPEKLITTAKAQKIQPDEFYAIELLKRSGICVVPGSGFGQPEGDYHIRITFLA---KGTEYIERFVKAHNEIMDLY 504          
The following BLAST results are available for this feature:
BLAST of CF833129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
ALAT1_HUMAN3.947e-5448.65Alanine aminotransferase 1 OS=Homo sapiens GN=GPT ... [more]
ALAT1_MOUSE6.733e-5448.00Alanine aminotransferase 1 OS=Mus musculus GN=Gpt ... [more]
ALAT1_RAT8.794e-5447.56Alanine aminotransferase 1 OS=Rattus norvegicus GN... [more]
ALAT_YEAST2.829e-5246.72Probable alanine aminotransferase OS=Saccharomyces... [more]
ALAT_SCHPO4.685e-3937.72Putative alanine aminotransferase OS=Schizosacchar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03B05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833129 ID=CF833129; Name=CF833129; organism=Citrus sinensis; type=EST; length=871bp
TTTTTTTTTGCAAAACCTTGTAATATTTCATCGTAACAAAGACCTATGAC
CGCCATTAAAACAAAAAAAAAAAAACAAAGAGGAAAAAAAGTACGCTTTG
TCCATTCACTCTGTAAACGTTTGACAATTGAAATGAATGGCTACACATTA
TTTTTCTGAACTCAGTCTCGTATTATTATGCAGAAGATCTTTCAATTACG
GAATTTGTCCATGAAACTTTTATGGAAGTCTGTCAGCCGGGTCACAATCG
CTGGAATCTTGTCCTCTTGAGGCAATATGGTGCACCTAAAATGCCAAGTG
CCGGGGACCTGCCCAAAACCAGAACCAGGAACAAGAACAATTCCAGTGGC
ATTGAGAAGGCGGCGACAATAAAATGCATCTGGAACAGTTTTTTCAGCTT
CAGCAGCTTTAATTGCCTTTTCAGGCAGTTGAATACGAGGAAAGAGATAC
ATTGCTCCTTCAGCCTTGTTACATGTTATTCCTTCCAAACTGTTAAATGC
ATCTTCCAATGTCTTTGCACGCCTGGCTAAAGATGAGAGGATTCCATCCC
TCTCAGCGCAATAGGACTCATAAGATTCATCTCCAACCTTAGGTGGACTC
ATGACGAGGCTTGCCAGAATTTGGCCGGAGATATTAGAACAAAGATTCAC
AGATGCCACTTTGTATATTTGCTCCCTTACTTCAGGACTGAACCCAGTGA
CCTCCATGTAACCTCCTCTTTTTCCACACTCCCCATGGTAACCTTTAGAA
ACTGACTGAAATGATACAAGGGATATATCCTTCTCACCATACCCCATGGA
TCGGGATACCTTCTTTAAGGAATGGAATTTTTTCTCTGGCACATAAACAT
TTTCCTGGTATACCTCATCTG
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