CF833236

Overview
NameCF833236
Unique NameCF833236
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF833236 vs. ExPASy Swiss-Prot
Match: SLY1_ENCCU (SEC1 family transport protein SLY1 OS=Encephalitozoon cuniculi GN=SLY1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.354e-15
Identity = 68/253 (26.88%), Postives = 114/253 (45.06%), Query Frame = 2 
Query:   11 KHLMNAVNSLPELTVRKQVIDKHTNIATVLLGEIKERSLDSYAKKENDMMIRGGIDRSELMGVLKGKGSKMDKLRFAIIYLISSETINQSEVEAVEAALRESEVDISAFQYVKKIKXXXXXXXXXXXXXXXXIVDWAEKLYGQSISAVTAGVKNLLSNDRQLALTRTVEALVEGRPNPEIDSYLMFDPRAPKSSSGSNHLKGPFKEAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQL 769
            K +  A++  PEL  R + ++ H +I + ++  IKER++D + K E     +GG    EL+  L  KGS  D LR AI+ L      N  + + ++  LR+ ++   A ++ ++                    +    LY Q ++++   VK LL    Q  ++  VE +     +       +FD    KS   S          +VF +GGG Y E  +L+ L +R      +IYG+TEIL   EF+ Q+
Sbjct:  295 KVIQEALDKAPELAKRNESVNAHISICSEMVEMIKERAIDDFYKVE-----KGGHTNQELI-ELSEKGSDEDVLRLAILLL------NTKDFDLIDPLLRKRKIKSKAIEFFRR--------------HGGTRSEKLGTLYSQVVTSLMGNVKKLLPVKEQTPISSLVETIYGDIKSQIYSGLRVFDSMGSKSIYASE-----ISRLVVFGVGGGTYTELKTLKLLEERIG--VPIIYGSTEILNAREFLRQV 514
The following BLAST results are available for this feature:
BLAST of CF833236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SLY1_ENCCU4.354e-1526.88SEC1 family transport protein SLY1 OS=Encephalitoz... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03E08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833236 ID=CF833236; Name=CF833236; organism=Citrus sinensis; type=EST; length=824bp
TATTGGAACCAAGCATTTGATGAATGCTGTGAACTCGCTACCTGAATTGA
CTGTTAGGAAGCAGGTGATTGATAAGCACACAAACATTGCAACTGTGCTG
TTGGGTGAGATAAAGGAAAGATCTCTTGATTCCTATGCTAAAAAGGAAAA
TGACATGATGATCAGAGGAGGCATTGATCGAAGTGAACTAATGGGTGTGC
TTAAAGGGAAAGGCAGTAAGATGGACAAATTGCGGTTTGCAATTATCTAT
CTGATTTCTTCGGAAACCATCAATCAATCAGAAGTGGAAGCAGTGGAAGC
AGCTCTGAGGGAGTCTGAGGTTGATATTAGTGCATTTCAGTATGTGAAGA
AGATCAAGTCATTGAATGTCTCATTGGCATCAGCAAATTCTGCAAGTAGA
AATAACATAGTTGATTGGGCCGAGAAACTATATGGGCAGTCAATCAGTGC
TGTGACAGCTGGTGTGAAGAATTTATTATCTAATGACAGGCAATTGGCAC
TGACAAGGACAGTGGAAGCTTTGGTGGAGGGGAGGCCAAATCCTGAAATT
GACTCGTACCTCATGTTTGATCCTCGTGCTCCCAAGTCAAGCTCCGGTAG
CAACCATCTGAAGGGACCATTTAAAGAAGCTATTGTGTTCATGATTGGTG
GTGGCAACTACATGGAATATGGCAGCTTGCAAGAGCTTGCGAAGCGTCAG
CAGCCTGTGAAGCATGTTATATACGGAACAACAGAAATTCTCACAGGAGA
TGAGTTTGTTGAGCAGCTTGCACTGTTGGGCCAGAAGATGGGATTGGGAA
ACACTGTTGCCCCATCCACCCATT
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