CF833459

Overview
NameCF833459
Unique NameCF833459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF833459 vs. ExPASy Swiss-Prot
Match: PHG1B_DICDI (Putative phagocytic receptor 1b OS=Dictyostelium discoideum GN=phg1b PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.788e-16
Identity = 40/133 (30.08%), Postives = 67/133 (50.38%), Query Frame = -3 
Query:  309 FGTLFIELCFILSSIWLGRFYYVFGFXXXXXXXXXXXXXXXXXXLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 707
            F  ++IEL +I +S+W    Y ++G                   LTY  L +ED +WWW +F   GS  +++++YSI Y  + +  + G + A  Y  Y LI+     +  GT+GF +S  FV  ++ ++K D
Sbjct:  456 FSAIYIELFYIFNSVWGHSTYTLYGILCLVFLILINVTVCITVALTYFQLSMEDHKWWWNSFINGGSTVVFIYMYSIYYYYY-ISHMYGLLQATFYFTYMLIVCFFFFILLGTVGFYSSLIFVKRIYRNLKSD 587
The following BLAST results are available for this feature:
BLAST of CF833459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PHG1B_DICDI6.788e-1630.08Putative phagocytic receptor 1b OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03K13_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833459 ID=CF833459; Name=CF833459; organism=Citrus sinensis; type=EST; length=709bp
TTTTTTTTAAGAAAAAGACTATTTAAATTCTCTCCATTGATAAAGCTATC
GAAAGTACAAGGAGAGCAAAACCAACCAATTACAATTTTGTAGAACAGCC
AATGTAAACTGAGATAGGTAATCCAAAATGATGCTCAAAACTAGTAAAAT
AGGAAAAACAAGAACAACAATATAGGGGAATGAGACAGCATATCATAATC
TCTAAATCTATCAAAAGGAAGGCTGAACCAAGAAAACTCCCTCTTCCTAA
CGTACTGGAGTCTTCTCTACCTGGTCGATGAAGATTGATTCACAAACATA
ATTTTTCAGTCAATCTTTACAGACGAGAAAAGGTAATGGACGAAGTAAAA
AGACGTAAGGAAGCCAATGGTGCCGGTTGCCAACATGATTGCGACTGCCA
TGATTAATGAATAACCAAGATATAGTAGAGCAGACACGGGTCCACTCAAA
CTCTGCAGGTCAAATACCAAATAGTTGATAGAGTACAGGAACACATACAG
TGCAACTGATCCTGAAGCAAAGAAAGCCTTCCACCACCAACGCCAATCCT
CCACACAAAGATGCATGTATGTTAGGACCACAGACACTTCAGCGCAAACA
ACAACCAGCAACAAAAGAACTATCAGCAGAAAACCAAAGACATAATAGAA
CCTTCCTAGCCAAATGCTAGAAAGAATGAAGCAAAGTTCTATAAAGAGGG
TTCCAAACG
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