CF833603

Overview
NameCF833603
Unique NameCF833603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833603 vs. ExPASy Swiss-Prot
Match: FCSA_DICDI (Fatty acyl-CoA synthetase A OS=Dictyostelium discoideum GN=fcsA PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.832e-29
Identity = 70/153 (45.75%), Postives = 93/153 (60.78%), Query Frame = -2
Query:  329 IIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASE--GIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAELSRSDP 781
            IIDRKKNIFKL+QGEY+AAE +E+V+ +  F  Q FVYGDS NS LV +V  D + ++   AS+   +   N   L         +L+  D+   EA+L GFE +K + +  EPFT EN LLTP+FK KRPQ K+ +   I  +YAE  R  P
Sbjct:  513 IIDRKKNIFKLSQGEYVAAEYLESVFVRSPFASQVFVYGDSLNSFLVGVVVPDFEVVQKLFASKYPELDVSNHATLAKSKELYKEILSSFDACAAEAKLHGFEKLKHIYVEHEPFTEENNLLTPSFKPKRPQLKERYQTIIDTLYAEYKRDHP 665          
BLAST of CF833603 vs. ExPASy Swiss-Prot
Match: FCSB_DICDI (Fatty acyl-CoA synthetase B OS=Dictyostelium discoideum GN=fcsB PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.244e-26
Identity = 60/146 (41.10%), Postives = 94/146 (64.38%), Query Frame = -2
Query:  344 IIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAEL 781
            I+DRKKNIFKL+QGEY+A EKIE +  K ++V Q  +YGDS  S ++AI+    ++   WA S+    ++++++C +      VL D+    +++ L GFE  KA+ L  E F+ +N LLTP+FK+KR + K+YF   I  +Y++L
Sbjct:  528 IVDRKKNIFKLSQGEYVAVEKIETIVVKSEYVEQVCIYGDSQKSCVIAIIHPHPESCSEWAGSKKTD-KDIKEICKNQDFIKVVLDDIIKNCKKSGLHGFEIPKAIHLTPEAFSDQNNLLTPSFKLKRHEIKKYFEDEIKKLYSKL 672          
BLAST of CF833603 vs. ExPASy Swiss-Prot
Match: LCF2_YEAST (Long-chain-fatty-acid--CoA ligase 2 OS=Saccharomyces cerevisiae GN=FAA2 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.380e-22
Identity = 61/152 (40.13%), Postives = 91/152 (59.87%), Query Frame = -2
Query:  347 IIDRKKNIFKLAQGEYIAAEKIENVY-AKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEGIQYEN------LEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAE 781
            +IDR KN FKLA GEYIA EKIEN+Y + C ++ Q FV+GD   + LV IV VD DA +   A++  + +       +E L  + + R   L  ++       L+GFE +  + + LEP T+E+ ++TPTFKIKR +A ++F   +  +YAE
Sbjct:  586 VIDRVKNFFKLAHGEYIAPEKIENIYLSSCPYITQIFVFGDPLKTFLVGIVGVDVDAAQPILAAKHPEVKTWTKEVLVENLNRNKKLRKEFLNKINKC--TDGLQGFEKLHNIKVGLEPLTLEDDVVTPTFKIKRAKASKFFKDTLDQLYAE 735          
BLAST of CF833603 vs. ExPASy Swiss-Prot
Match: ACSL4_RAT (Long-chain-fatty-acid--CoA ligase 4 OS=Rattus norvegicus GN=Acsl4 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.591e-16
Identity = 47/143 (32.87%), Postives = 75/143 (52.45%), Query Frame = -2
Query:  353 IIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMY 781
            IIDRKK++ KL  GEY++  K+E     C  +     +  S  S +++ V  +Q  L   A  +G++   ++ +CN+P   A +L ++       +L  FE    V L  EP+T E GL+T  FK+KR + K ++ K I  MY
Sbjct:  526 IIDRKKDLVKLQAGEYVSLGKVEAALKNCPLIDNICAFAKSDQSYVISFVVPNQKKLTLLAQQKGVEGSWVD-ICNNPAMEAEILKEIREAANAMKLERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELKNHYLKDIERMY 667          
BLAST of CF833603 vs. ExPASy Swiss-Prot
Match: ACSL4_MOUSE (Long-chain-fatty-acid--CoA ligase 4 OS=Mus musculus GN=Acsl4 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.045e-15
Identity = 46/143 (32.17%), Postives = 74/143 (51.75%), Query Frame = -2
Query:  353 IIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMY 781
            IIDRKK++ KL  GEY+   K+E     C  +     +  S  S +++ V  +Q  L   A  +G++   ++ +CN+P   A +L ++       +L  FE    V L  EP+T E GL+T  FK+KR + K ++ K +  MY
Sbjct:  567 IIDRKKDLVKLQAGEYVFLGKVEAALKNCPLIDNICAFAKSDQSYVISFVVPNQKKLTLLAQQKGVEGSWVD-ICNNPAMEAEILKEIREAANAMKLERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELKNHYLKDVERMY 708          
BLAST of CF833603 vs. ExPASy Swiss-Prot
Match: ACSL4_HUMAN (Long-chain-fatty-acid--CoA ligase 4 OS=Homo sapiens GN=ACSL4 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.045e-15
Identity = 46/143 (32.17%), Postives = 75/143 (52.45%), Query Frame = -2
Query:  353 IIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMY 781
            IIDRKK++ KL  GEY++  K+E     C  +     +  S  S +++ V  +Q  L   A  +G++   ++ +CN+P   A +L ++       +L  FE    V L  EP+T E GL+T  FK+KR + + ++ K I  MY
Sbjct:  567 IIDRKKDLVKLQAGEYVSLGKVEAALKNCPLIDNICAFAKSDQSYVISFVVPNQKRLTLLAQQKGVEGTWVD-ICNNPAMEAEILKEIREAANAMKLERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELRNHYLKDIERMY 708          
BLAST of CF833603 vs. ExPASy Swiss-Prot
Match: LCF1_SCHPO (Long-chain-fatty-acid--CoA ligase 1 OS=Schizosaccharomyces pombe GN=lcf1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.782e-15
Identity = 51/147 (34.69%), Postives = 77/147 (52.38%), Query Frame = -2
Query:  347 IIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASE-GIQYE-NLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMYAE 781
            IIDRKKN+ K   GEYIA EK+E+ Y     V    VY D      +AI+  ++  ++  A  + G+  + + E++C++ + R  V  D+  +GR       E ++ V LV   FT ENGL+T   K++R +    F K I   YAE
Sbjct:  530 IIDRKKNLVKTQNGEYIALEKLESRYRTSSLVSNICVYADQTKVKPLAIIVPNEPVVRKLATEQAGLSPDASWEEVCHNKKVRQLVYDDLIRIGRSHHFANIELIQNVVLVPIEFTPENGLVTAAQKLQRRKILDRFKKEIDAAYAE 676          
BLAST of CF833603 vs. ExPASy Swiss-Prot
Match: ACSL3_PONAB (Long-chain-fatty-acid--CoA ligase 3 OS=Pongo abelii GN=ACSL3 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.846e-15
Identity = 48/143 (33.57%), Postives = 71/143 (49.65%), Query Frame = -2
Query:  353 IIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMY 781
            IIDRKK++ KL  GEY++  K+E        V     Y +S++S ++  V  +Q  L   A  +G++    E+LCN       VL  +      A L  FE    + L  EP+T E GL+T  FK+KR + K ++   I  MY
Sbjct:  576 IIDRKKDLVKLQAGEYVSLGKVEAALKNLPLVDNICAYANSYHSYVIGFVVPNQKELTELARKKGLK-GTWEELCNSCEMENEVLKVLSEAAISASLEKFEIPVKIRLSPEPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717          
BLAST of CF833603 vs. ExPASy Swiss-Prot
Match: ACSL3_HUMAN (Long-chain-fatty-acid--CoA ligase 3 OS=Homo sapiens GN=ACSL3 PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 8.846e-15
Identity = 48/143 (33.57%), Postives = 71/143 (49.65%), Query Frame = -2
Query:  353 IIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMY 781
            IIDRKK++ KL  GEY++  K+E        V     Y +S++S ++  V  +Q  L   A  +G++    E+LCN       VL  +      A L  FE    + L  EP+T E GL+T  FK+KR + K ++   I  MY
Sbjct:  576 IIDRKKDLVKLQAGEYVSLGKVEAALKNLPLVDNICAYANSYHSYVIGFVVPNQKELTELARKKGLK-GTWEELCNSCEMENEVLKVLSEAAISASLEKFEIPVKIRLSPEPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717          
BLAST of CF833603 vs. ExPASy Swiss-Prot
Match: ACSL3_MOUSE (Long-chain-fatty-acid--CoA ligase 3 OS=Mus musculus GN=Acsl3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.971e-14
Identity = 46/143 (32.17%), Postives = 71/143 (49.65%), Query Frame = -2
Query:  353 IIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEGIQYENLEQLCNDPRARAAVLADMDSLGREAQLRGFEFVKAVTLVLEPFTVENGLLTPTFKIKRPQAKQYFAKAIADMY 781
            IIDRKK++ KL  GEY++  K+E        +     Y +S++S ++  V  +Q  L   A ++G +    E+LCN       VL  +      A L  FE    + L  +P+T E GL+T  FK+KR + K ++   I  MY
Sbjct:  576 IIDRKKDLVKLQAGEYVSLGKVEAALKNLPLIDNICAYANSYHSYVIGFVVPNQKELTELARTKGFK-GTWEELCNSSEMENEVLKVLSEAAISASLEKFEIPLKIRLSPDPWTPETGLVTDAFKLKRKELKTHYQADIERMY 717          
The following BLAST results are available for this feature:
BLAST of CF833603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
FCSA_DICDI2.832e-2945.75Fatty acyl-CoA synthetase A OS=Dictyostelium disco... [more]
FCSB_DICDI2.244e-2641.10Fatty acyl-CoA synthetase B OS=Dictyostelium disco... [more]
LCF2_YEAST4.380e-2240.13Long-chain-fatty-acid--CoA ligase 2 OS=Saccharomyc... [more]
ACSL4_RAT3.591e-1632.87Long-chain-fatty-acid--CoA ligase 4 OS=Rattus norv... [more]
ACSL4_MOUSE1.045e-1532.17Long-chain-fatty-acid--CoA ligase 4 OS=Mus musculu... [more]
ACSL4_HUMAN1.045e-1532.17Long-chain-fatty-acid--CoA ligase 4 OS=Homo sapien... [more]
LCF1_SCHPO1.782e-1534.69Long-chain-fatty-acid--CoA ligase 1 OS=Schizosacch... [more]
ACSL3_PONAB8.846e-1533.57Long-chain-fatty-acid--CoA ligase 3 OS=Pongo abeli... [more]
ACSL3_HUMAN8.846e-1533.57Long-chain-fatty-acid--CoA ligase 3 OS=Homo sapien... [more]
ACSL3_MOUSE1.971e-1432.17Long-chain-fatty-acid--CoA ligase 3 OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03O13_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03O13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833603 ID=CF833603; Name=CF833603; organism=Citrus sinensis; type=EST; length=782bp
TTTTTTTTTTTTTTTGAACCCAGCAATAGTTTATTCTTTAAACAATATTC
ATTAAAATATGATTCATTGTGAAAACGAAATGGTTAATACAATGTATTAC
AATCCTATGCGTATAAAAAGATACAGGCCACAAGCTCATATCAACAGAGA
GGGGCTGCTTAAATATTTGAATTTCCCTTTATTTTGGCAAAACAATTAAA
GAACAAACAAGGAATGCCTCGACACCGGTCGTTACTTATTGTGGGACATC
TGCTAAAGCTAAATCTTGAAATGCAGTCTTAATTCTACACATCTGTGATT
TTGATGGTCTTCACAATGTATTTGGTGAGGGATCAGATCTAGAAAGCTCA
GCATACATATCCGCTATGGCTTTTGCAAAGTATTGCTTTGCTTGTGGTCT
CTTTATCTTAAATGTTGGAGTGAGCAGTCCATTTTCCACTGTGAATGGCT
CGAGCACCAAAGTCACAGCTTTTACAAATTCAAAGCCTCTCAACTGAGCT
TCTCTTCCTAGGGAATCCATATCAGCCAACACAGCAGCCCTCGCTCTTGG
GTCATTGCAAAGTTGCTCTAAGTTTTCATACTGAATGCCTTCAGATGCAG
CCCATGCTTTTAAAGCATCTTGGTCCACTGAGACAATGGCTACCAAAGCT
GAATTGAAGCTGTCACCATAGACAAAGCACTGACCAACAAACTTGCACTT
GGCATATACATTCTCAATTTTCTCTGCAGCTATGTACTCTCCCTGCGCTA
ACTTAAAAATATTCTTCTTCCTATCAATAATC
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