CF833671

Overview
NameCF833671
Unique NameCF833671
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB5_ORYSJ (Tubulin beta-5 chain OS=Oryza sativa subsp. japonica GN=TUBB5 PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.355e-56
Identity = 107/109 (98.17%), Postives = 108/109 (99.08%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCDIPP GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPNGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB1_ELEIN (Tubulin beta-1 chain OS=Eleusine indica GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.355e-56
Identity = 107/109 (98.17%), Postives = 108/109 (99.08%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCDIPP GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPNGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB8_ARATH (Tubulin beta-8 chain OS=Arabidopsis thaliana GN=TUBB8 PE=2 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 2.311e-56
Identity = 107/109 (98.17%), Postives = 108/109 (99.08%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKS+VCDIPP GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB2_MAIZE (Tubulin beta-2 chain OS=Zea mays GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.311e-56
Identity = 106/109 (97.25%), Postives = 108/109 (99.08%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGL M+STF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMSSTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB2_LUPAL (Tubulin beta-2 chain OS=Lupinus albus GN=TUBB2 PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.311e-56
Identity = 107/109 (98.17%), Postives = 108/109 (99.08%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKS+VCDIPP GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB1_LUPAL (Tubulin beta-1 chain OS=Lupinus albus GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.311e-56
Identity = 107/109 (98.17%), Postives = 108/109 (99.08%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKS+VCDIPP GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB3_ORYSJ (Tubulin beta-3 chain OS=Oryza sativa subsp. japonica GN=TUBB3 PE=2 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 3.018e-56
Identity = 107/109 (98.17%), Postives = 108/109 (99.08%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCDIPP GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPIGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB3_GOSHI (Tubulin beta-3 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 3.018e-56
Identity = 106/109 (97.25%), Postives = 107/109 (98.17%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LTASAMFRGKMSTKE DEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGL MASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTASAMFRGKMSTKEADEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB1_MAIZE (Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 3.018e-56
Identity = 106/109 (97.25%), Postives = 108/109 (99.08%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKS+VCDIPP GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPHGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB7_ARATH (Tubulin beta-7 chain OS=Arabidopsis thaliana GN=TUBB7 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.942e-56
Identity = 106/109 (97.25%), Postives = 108/109 (99.08%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKS+VCDIPP GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
The following BLAST results are available for this feature:
BLAST of CF833671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
TBB5_ORYSJ1.355e-5698.17Tubulin beta-5 chain OS=Oryza sativa subsp. japoni... [more]
TBB1_ELEIN1.355e-5698.17Tubulin beta-1 chain OS=Eleusine indica GN=TUBB1 P... [more]
TBB8_ARATH2.311e-5698.17Tubulin beta-8 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB2_MAIZE2.311e-5697.25Tubulin beta-2 chain OS=Zea mays GN=TUBB2 PE=2 SV=... [more]
TBB2_LUPAL2.311e-5698.17Tubulin beta-2 chain OS=Lupinus albus GN=TUBB2 PE=... [more]
TBB1_LUPAL2.311e-5698.17Tubulin beta-1 chain OS=Lupinus albus GN=TUBB1 PE=... [more]
TBB3_ORYSJ3.018e-5698.17Tubulin beta-3 chain OS=Oryza sativa subsp. japoni... [more]
TBB3_GOSHI3.018e-5697.25Tubulin beta-3 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB1_MAIZE3.018e-5697.25Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=... [more]
TBB7_ARATH3.942e-5697.25Tubulin beta-7 chain OS=Arabidopsis thaliana GN=TU... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04A08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833671 ID=CF833671; Name=CF833671; organism=Citrus sinensis; type=EST; length=828bp
TTTTTTTTTTTTTTTAAGGTGATCAAACTAACAATTCTTTATTCAACCGT
TCGAAAAGAACAACAAACAATATCGTCTTAAAAGACAGAAATTGTAAACA
ACAACAAAAGAAGCCACAGTACAAGGGGGTTGGTCTCATCAAGCGTTCTT
TTTCTGTGGTTGCCCTTTGATTGCTACCCTTTCTTAGCCCTCGTAGTTCT
CGTCAAGGCCCTCCTCATACTCTTCCTCATCATCAGCTGTTGCATCCTGA
TATTGTTGGTACTCAGCCACCAAGTCATTCATGTTGCTCTCTGCCTCAGT
GAACTCCATCTCATCCATACCCTCCCCAGTATACCAATGCAAAAAGGCCT
TACGCCGGAACATGGCAGTAAACTGTTCACTCACCCTCCTGAACATCTCT
TGGATGGATGTTGAGTTACCAATAAAAGTAGATGCCATCTTCAGACCACG
TGGTGGAATATCGCACACGCTGGACTTCACATTGTTGGGGATCCACTCCA
CAAAGTAGGATGAATTCTTGTTCTGTACATTAATCATCTGCTCATCCACC
TCTTTGGTGCTCATCTTTCCTCTGAACATGGCTGAGGCTGTGAGGGAAAA
AGCAACTTAACTACTTTCGAACTTTGATTCCCGTAAGCAGAGATCTTTCT
GATTTGAAGAACATGGAAACCACCTGCGCAGGTAATAACTGGTCAGAGGG
TCTTCTGCTTCCTCCGTTTGGCAGTATTGCTGATGATGATGTCATGAACG
ACAATCTTGATTTTCTTAATGTCCCCCAATATGGAAGAAACCCCGACTAC
ATGGGTTAAGTGCAGCACTGCTTTTTTT
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