CF833671

Overview
NameCF833671
Unique NameCF833671
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB7_GOSHI (Tubulin beta-7 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 7.433e-55
Identity = 104/109 (95.41%), Postives = 106/109 (97.25%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GL M+STF+GNSTSIQEMFRRVSEQFT MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPTGLTMSSTFMGNSTSIQEMFRRVSEQFTVMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB5_ARATH (Tubulin beta-5 chain OS=Arabidopsis thaliana GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 7.433e-55
Identity = 101/109 (92.66%), Postives = 109/109 (100.00%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LTASA+FRG+MSTKEVDEQ++N+QNKNSSYFVEWIPNNVKSSVCDIPP+GLKMA+TF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  312 LTASAIFRGQMSTKEVDEQILNIQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMAATFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 420
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB4_ARATH (Tubulin beta-4 chain OS=Arabidopsis thaliana GN=TUBB4 PE=2 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 7.433e-55
Identity = 103/109 (94.50%), Postives = 108/109 (99.08%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LTASA+FRGK+STKEVDEQM+N+QNKNSSYFVEWIPNNVKSSVCDI P+GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTASAVFRGKLSTKEVDEQMMNIQNKNSSYFVEWIPNNVKSSVCDIAPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB_POLAG (Tubulin beta chain OS=Polytomella agilis GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 9.708e-55
Identity = 101/109 (92.66%), Postives = 109/109 (100.00%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LTASA+FRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCDIPP+GLKM++TFIGNST+IQEMF+RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB_CHLRE (Tubulin beta-1/beta-2 chain OS=Chlamydomonas reinhardtii GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 9.708e-55
Identity = 101/109 (92.66%), Postives = 109/109 (100.00%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LTASA+FRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCDIPP+GLKM++TFIGNST+IQEMF+RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB_CHLIN (Tubulin beta chain OS=Chlamydomonas incerta GN=TUBB PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 9.708e-55
Identity = 101/109 (92.66%), Postives = 109/109 (100.00%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LTASA+FRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCDIPP+GLKM++TFIGNST+IQEMF+RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB8_ORYSJ (Tubulin beta-8 chain OS=Oryza sativa subsp. japonica GN=TUBB8 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 9.708e-55
Identity = 104/109 (95.41%), Postives = 106/109 (97.25%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LTASAMFRG+MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GL MASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT EGMDEMEFTEAESNMNDLV
Sbjct:  311 LTASAMFRGRMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPVGLSMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTSEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB3_MAIZE (Tubulin beta-3 chain OS=Zea mays GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 9.708e-55
Identity = 104/109 (95.41%), Postives = 106/109 (97.25%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GL M+STF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT EGMDEMEFTEAESNMNDLV
Sbjct:  311 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPVGLSMSSTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTSEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB1_VOLCA (Tubulin beta chain OS=Volvox carteri GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 9.708e-55
Identity = 101/109 (92.66%), Postives = 109/109 (100.00%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LTASA+FRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCDIPP+GLKM++TFIGNST+IQEMF+RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB1_DAUCA (Tubulin beta-1 chain (Fragment) OS=Daucus carota GN=TUBB1 PE=1 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 9.708e-55
Identity = 104/109 (95.41%), Postives = 107/109 (98.17%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LTASAMFR KMSTK++DEQMINVQNKNSSYFVEWIPNNVKS+VCDIPP GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  179 LTASAMFREKMSTKDLDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 287
The following BLAST results are available for this feature:
BLAST of CF833671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
TBB7_GOSHI7.433e-5595.41Tubulin beta-7 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB5_ARATH7.433e-5592.66Tubulin beta-5 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB4_ARATH7.433e-5594.50Tubulin beta-4 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB_POLAG9.708e-5592.66Tubulin beta chain OS=Polytomella agilis GN=TUBB1 ... [more]
TBB_CHLRE9.708e-5592.66Tubulin beta-1/beta-2 chain OS=Chlamydomonas reinh... [more]
TBB_CHLIN9.708e-5592.66Tubulin beta chain OS=Chlamydomonas incerta GN=TUB... [more]
TBB8_ORYSJ9.708e-5595.41Tubulin beta-8 chain OS=Oryza sativa subsp. japoni... [more]
TBB3_MAIZE9.708e-5595.41Tubulin beta-3 chain OS=Zea mays GN=TUBB3 PE=2 SV=... [more]
TBB1_VOLCA9.708e-5592.66Tubulin beta chain OS=Volvox carteri GN=TUBB1 PE=3... [more]
TBB1_DAUCA9.708e-5595.41Tubulin beta-1 chain (Fragment) OS=Daucus carota G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04A08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833671 ID=CF833671; Name=CF833671; organism=Citrus sinensis; type=EST; length=828bp
TTTTTTTTTTTTTTTAAGGTGATCAAACTAACAATTCTTTATTCAACCGT
TCGAAAAGAACAACAAACAATATCGTCTTAAAAGACAGAAATTGTAAACA
ACAACAAAAGAAGCCACAGTACAAGGGGGTTGGTCTCATCAAGCGTTCTT
TTTCTGTGGTTGCCCTTTGATTGCTACCCTTTCTTAGCCCTCGTAGTTCT
CGTCAAGGCCCTCCTCATACTCTTCCTCATCATCAGCTGTTGCATCCTGA
TATTGTTGGTACTCAGCCACCAAGTCATTCATGTTGCTCTCTGCCTCAGT
GAACTCCATCTCATCCATACCCTCCCCAGTATACCAATGCAAAAAGGCCT
TACGCCGGAACATGGCAGTAAACTGTTCACTCACCCTCCTGAACATCTCT
TGGATGGATGTTGAGTTACCAATAAAAGTAGATGCCATCTTCAGACCACG
TGGTGGAATATCGCACACGCTGGACTTCACATTGTTGGGGATCCACTCCA
CAAAGTAGGATGAATTCTTGTTCTGTACATTAATCATCTGCTCATCCACC
TCTTTGGTGCTCATCTTTCCTCTGAACATGGCTGAGGCTGTGAGGGAAAA
AGCAACTTAACTACTTTCGAACTTTGATTCCCGTAAGCAGAGATCTTTCT
GATTTGAAGAACATGGAAACCACCTGCGCAGGTAATAACTGGTCAGAGGG
TCTTCTGCTTCCTCCGTTTGGCAGTATTGCTGATGATGATGTCATGAACG
ACAATCTTGATTTTCTTAATGTCCCCCAATATGGAAGAAACCCCGACTAC
ATGGGTTAAGTGCAGCACTGCTTTTTTT
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