CF833671

Overview
NameCF833671
Unique NameCF833671
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB_ACHKL (Tubulin beta chain OS=Achlya klebsiana PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 8.219e-54
Identity = 98/109 (89.91%), Postives = 108/109 (99.08%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LTA+ MFRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNN+K+SVCDIPP+GLKM++TFIGNST+IQEMF+RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  309 LTAACMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKASVCDIPPKGLKMSTTFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 417
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB_PHYCI (Tubulin beta chain OS=Phytophthora cinnamomi PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.073e-53
Identity = 98/109 (89.91%), Postives = 108/109 (99.08%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LTA+ MFRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNN+K+SVCDIPP+GLKM++TFIGNST+IQEMF+RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTAACMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKASVCDIPPQGLKMSTTFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB_TRYCR (Tubulin beta chain OS=Trypanosoma cruzi PE=3 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 1.402e-53
Identity = 97/109 (88.99%), Postives = 106/109 (97.25%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LTASA+FRG+MSTKEVDEQM+NVQNKNSSYF+EWIPNN+KSS+CDIPP+GLKMA TF+GN+T IQEMFRRV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTASALFRGRMSTKEVDEQMLNVQNKNSSYFIEWIPNNIKSSICDIPPKGLKMAVTFVGNNTCIQEMFRRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB_TRYBR (Tubulin beta chain OS=Trypanosoma brucei rhodesiense PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.123e-53
Identity = 98/109 (89.91%), Postives = 105/109 (96.33%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LTASA+FRG+MSTKEVDEQM+NVQNKNSSYF+EWIPNN+KSSVCDIPP+GLKMA TFIGN+T IQEMFRRV EQFT MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTASALFRGRMSTKEVDEQMLNVQNKNSSYFIEWIPNNIKSSVCDIPPKGLKMAVTFIGNNTCIQEMFRRVGEQFTLMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB2_OOMCK (Tubulin beta-2 chain (Fragment) OS=Oomycete-like sp. (strain MacKay2000) GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.123e-53
Identity = 97/109 (88.99%), Postives = 106/109 (97.25%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LTAS MFRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNN+KSSVCDIPP+GLKM++ FIGNST+IQEMF+R+ EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  286 LTASCMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSACFIGNSTAIQEMFKRIGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 394
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB_PLAFK (Tubulin beta chain OS=Plasmodium falciparum (isolate K1 / Thailand) PE=3 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 5.327e-53
Identity = 98/109 (89.91%), Postives = 106/109 (97.25%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LTA AMFRG+MSTKEVDEQM+NVQNKNSSYFVEWIP+N KSSVCDIPP+GLKMA TF+GNST+IQEMF+RVS+QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTACAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPHNTKSSVCDIPPKGLKMAVTFVGNSTAIQEMFKRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB_PLAF7 (Tubulin beta chain OS=Plasmodium falciparum (isolate 3D7) GN=PF10_0084 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.327e-53
Identity = 98/109 (89.91%), Postives = 106/109 (97.25%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LTA AMFRG+MSTKEVDEQM+NVQNKNSSYFVEWIP+N KSSVCDIPP+GLKMA TF+GNST+IQEMF+RVS+QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTACAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPHNTKSSVCDIPPKGLKMAVTFVGNSTAIQEMFKRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB1_SOYBN (Tubulin beta-1 chain OS=Glycine max GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.957e-53
Identity = 99/109 (90.83%), Postives = 104/109 (95.41%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LTASAMFRGKMSTKEVD+QMINVQNKNSSYFVEWIPNNVKSSVCDIPP GL M+STF+GNSTSIQEMFRRVSEQFT MF+RKAFLHWYTGEGMDEMEFTE  +NMNDLV
Sbjct:  311 LTASAMFRGKMSTKEVDQQMINVQNKNSSYFVEWIPNNVKSSVCDIPPTGLSMSSTFMGNSTSIQEMFRRVSEQFTVMFKRKAFLHWYTGEGMDEMEFTEVRANMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB_GIALA (Tubulin beta chain OS=Giardia lamblia PE=2 SV=3)

HSP 1 Score: 207.223 bits (526), Expect = 9.087e-53
Identity = 97/109 (88.99%), Postives = 106/109 (97.25%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LTA+AMFRG+MSTKEVDEQM+N+QNKNSSYFVEWIPNN+K SVCDIPPRGLKMA+TFIGNST IQE+F+RV EQF+AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTAAAMFRGRMSTKEVDEQMLNIQNKNSSYFVEWIPNNMKVSVCDIPPRGLKMAATFIGNSTCIQELFKRVGEQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB4_CAEEL (Tubulin beta-4 chain OS=Caenorhabditis elegans GN=tbb-4 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.187e-52
Identity = 95/109 (87.16%), Postives = 107/109 (98.17%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LT +AMFRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRG+KMA+TF+GNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGVKMAATFVGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
The following BLAST results are available for this feature:
BLAST of CF833671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
TBB_ACHKL8.219e-5489.91Tubulin beta chain OS=Achlya klebsiana PE=2 SV=1[more]
TBB_PHYCI1.073e-5389.91Tubulin beta chain OS=Phytophthora cinnamomi PE=3 ... [more]
TBB_TRYCR1.402e-5388.99Tubulin beta chain OS=Trypanosoma cruzi PE=3 SV=2[more]
TBB_TRYBR3.123e-5389.91Tubulin beta chain OS=Trypanosoma brucei rhodesien... [more]
TBB2_OOMCK3.123e-5388.99Tubulin beta-2 chain (Fragment) OS=Oomycete-like s... [more]
TBB_PLAFK5.327e-5389.91Tubulin beta chain OS=Plasmodium falciparum (isola... [more]
TBB_PLAF75.327e-5389.91Tubulin beta chain OS=Plasmodium falciparum (isola... [more]
TBB1_SOYBN6.957e-5390.83Tubulin beta-1 chain OS=Glycine max GN=TUBB1 PE=3 ... [more]
TBB_GIALA9.087e-5388.99Tubulin beta chain OS=Giardia lamblia PE=2 SV=3[more]
TBB4_CAEEL1.187e-5287.16Tubulin beta-4 chain OS=Caenorhabditis elegans GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04A08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833671 ID=CF833671; Name=CF833671; organism=Citrus sinensis; type=EST; length=828bp
TTTTTTTTTTTTTTTAAGGTGATCAAACTAACAATTCTTTATTCAACCGT
TCGAAAAGAACAACAAACAATATCGTCTTAAAAGACAGAAATTGTAAACA
ACAACAAAAGAAGCCACAGTACAAGGGGGTTGGTCTCATCAAGCGTTCTT
TTTCTGTGGTTGCCCTTTGATTGCTACCCTTTCTTAGCCCTCGTAGTTCT
CGTCAAGGCCCTCCTCATACTCTTCCTCATCATCAGCTGTTGCATCCTGA
TATTGTTGGTACTCAGCCACCAAGTCATTCATGTTGCTCTCTGCCTCAGT
GAACTCCATCTCATCCATACCCTCCCCAGTATACCAATGCAAAAAGGCCT
TACGCCGGAACATGGCAGTAAACTGTTCACTCACCCTCCTGAACATCTCT
TGGATGGATGTTGAGTTACCAATAAAAGTAGATGCCATCTTCAGACCACG
TGGTGGAATATCGCACACGCTGGACTTCACATTGTTGGGGATCCACTCCA
CAAAGTAGGATGAATTCTTGTTCTGTACATTAATCATCTGCTCATCCACC
TCTTTGGTGCTCATCTTTCCTCTGAACATGGCTGAGGCTGTGAGGGAAAA
AGCAACTTAACTACTTTCGAACTTTGATTCCCGTAAGCAGAGATCTTTCT
GATTTGAAGAACATGGAAACCACCTGCGCAGGTAATAACTGGTCAGAGGG
TCTTCTGCTTCCTCCGTTTGGCAGTATTGCTGATGATGATGTCATGAACG
ACAATCTTGATTTTCTTAATGTCCCCCAATATGGAAGAAACCCCGACTAC
ATGGGTTAAGTGCAGCACTGCTTTTTTT
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