CF833671

Overview
NameCF833671
Unique NameCF833671
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB2_ECHMU (Tubulin beta-2 chain OS=Echinococcus multilocularis GN=TUB-2 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.187e-52
Identity = 96/109 (88.07%), Postives = 107/109 (98.17%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGLKM++TF+GNST+IQE+FRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFVGNSTAIQELFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB1_GADMO (Tubulin beta-1 chain OS=Gadus morhua PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.187e-52
Identity = 96/109 (88.07%), Postives = 107/109 (98.17%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB_PLAFA (Tubulin beta chain OS=Plasmodium falciparum PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.550e-52
Identity = 98/109 (89.91%), Postives = 105/109 (96.33%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LTA AMFRG+MSTKEVDEQM+NVQNKNSSYFVEWIP+N KSSVCDIPP GLKMA TF+GNST+IQEMF+RVS+QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTACAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPHNTKSSVCDIPPLGLKMAVTFVGNSTAIQEMFKRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB_EIMTE (Tubulin beta chain OS=Eimeria tenella PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.550e-52
Identity = 96/109 (88.07%), Postives = 106/109 (97.25%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LTA A+FRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNN+KS VCDIPP+GLKM+ TF+GNST+IQEMF+RVS+QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTACALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNMKSGVCDIPPKGLKMSVTFVGNSTAIQEMFKRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB2_CAEEL (Tubulin beta-2 chain OS=Caenorhabditis elegans GN=tbb-2 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.550e-52
Identity = 94/109 (86.24%), Postives = 107/109 (98.17%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LT +AMFRG+MS +EVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGLKMA+TF+GNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDL+
Sbjct:  311 LTVAAMFRGRMSMREVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFVGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLI 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB_PSEAM (Tubulin beta chain OS=Pseudopleuronectes americanus PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.024e-52
Identity = 96/109 (88.07%), Postives = 107/109 (98.17%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGLKM+STFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRMSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB_STRPU (Tubulin beta chain (Fragment) OS=Strongylocentrotus purpuratus PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.644e-52
Identity = 95/109 (87.16%), Postives = 107/109 (98.17%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGLKM++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  156 LTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 264
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB_PIG (Tubulin beta chain OS=Sus scrofa PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.644e-52
Identity = 95/109 (87.16%), Postives = 107/109 (98.17%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGLKM++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB_PARLI (Tubulin beta chain OS=Paracentrotus lividus PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.644e-52
Identity = 95/109 (87.16%), Postives = 107/109 (98.17%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGLKM++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB_LYTPI (Tubulin beta chain (Fragment) OS=Lytechinus pictus PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.644e-52
Identity = 95/109 (87.16%), Postives = 107/109 (98.17%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGLKM++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:   42 LTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 150
The following BLAST results are available for this feature:
BLAST of CF833671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
TBB2_ECHMU1.187e-5288.07Tubulin beta-2 chain OS=Echinococcus multiloculari... [more]
TBB1_GADMO1.187e-5288.07Tubulin beta-1 chain OS=Gadus morhua PE=2 SV=1[more]
TBB_PLAFA1.550e-5289.91Tubulin beta chain OS=Plasmodium falciparum PE=3 S... [more]
TBB_EIMTE1.550e-5288.07Tubulin beta chain OS=Eimeria tenella PE=2 SV=1[more]
TBB2_CAEEL1.550e-5286.24Tubulin beta-2 chain OS=Caenorhabditis elegans GN=... [more]
TBB_PSEAM2.024e-5288.07Tubulin beta chain OS=Pseudopleuronectes americanu... [more]
TBB_STRPU2.644e-5287.16Tubulin beta chain (Fragment) OS=Strongylocentrotu... [more]
TBB_PIG2.644e-5287.16Tubulin beta chain OS=Sus scrofa PE=1 SV=1[more]
TBB_PARLI2.644e-5287.16Tubulin beta chain OS=Paracentrotus lividus PE=2 S... [more]
TBB_LYTPI2.644e-5287.16Tubulin beta chain (Fragment) OS=Lytechinus pictus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04A08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833671 ID=CF833671; Name=CF833671; organism=Citrus sinensis; type=EST; length=828bp
TTTTTTTTTTTTTTTAAGGTGATCAAACTAACAATTCTTTATTCAACCGT
TCGAAAAGAACAACAAACAATATCGTCTTAAAAGACAGAAATTGTAAACA
ACAACAAAAGAAGCCACAGTACAAGGGGGTTGGTCTCATCAAGCGTTCTT
TTTCTGTGGTTGCCCTTTGATTGCTACCCTTTCTTAGCCCTCGTAGTTCT
CGTCAAGGCCCTCCTCATACTCTTCCTCATCATCAGCTGTTGCATCCTGA
TATTGTTGGTACTCAGCCACCAAGTCATTCATGTTGCTCTCTGCCTCAGT
GAACTCCATCTCATCCATACCCTCCCCAGTATACCAATGCAAAAAGGCCT
TACGCCGGAACATGGCAGTAAACTGTTCACTCACCCTCCTGAACATCTCT
TGGATGGATGTTGAGTTACCAATAAAAGTAGATGCCATCTTCAGACCACG
TGGTGGAATATCGCACACGCTGGACTTCACATTGTTGGGGATCCACTCCA
CAAAGTAGGATGAATTCTTGTTCTGTACATTAATCATCTGCTCATCCACC
TCTTTGGTGCTCATCTTTCCTCTGAACATGGCTGAGGCTGTGAGGGAAAA
AGCAACTTAACTACTTTCGAACTTTGATTCCCGTAAGCAGAGATCTTTCT
GATTTGAAGAACATGGAAACCACCTGCGCAGGTAATAACTGGTCAGAGGG
TCTTCTGCTTCCTCCGTTTGGCAGTATTGCTGATGATGATGTCATGAACG
ACAATCTTGATTTTCTTAATGTCCCCCAATATGGAAGAAACCCCGACTAC
ATGGGTTAAGTGCAGCACTGCTTTTTTT
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