CF833671

Overview
NameCF833671
Unique NameCF833671
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB_LEIME (Tubulin beta chain OS=Leishmania mexicana PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.644e-52
Identity = 95/109 (87.16%), Postives = 104/109 (95.41%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LTASA+FRG+MSTKEVDEQM+NVQNKNSSYF+EWIPNN+KSS+CDIPP+GLKM+ TFIGN+T IQEMFRRV EQFT MFRRK FLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  313 LTASALFRGRMSTKEVDEQMLNVQNKNSSYFIEWIPNNIKSSICDIPPKGLKMSVTFIGNNTCIQEMFRRVGEQFTGMFRRKRFLHWYTGEGMDEMEFTEAESNMNDLV 421
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB7_CHICK (Tubulin beta-7 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.644e-52
Identity = 96/109 (88.07%), Postives = 106/109 (97.25%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGLKMA TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB5_XENTR (Tubulin beta chain OS=Xenopus tropicalis GN=tubb PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.644e-52
Identity = 96/109 (88.07%), Postives = 106/109 (97.25%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGLKMA TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB5_XENLA (Tubulin beta chain OS=Xenopus laevis GN=tubb PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.644e-52
Identity = 96/109 (88.07%), Postives = 106/109 (97.25%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGLKMA TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB5_RAT (Tubulin beta-5 chain OS=Rattus norvegicus GN=Tubb5 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.644e-52
Identity = 96/109 (88.07%), Postives = 106/109 (97.25%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGLKMA TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB5_PONAB (Tubulin beta chain OS=Pongo abelii GN=TUBB PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.644e-52
Identity = 96/109 (88.07%), Postives = 106/109 (97.25%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGLKMA TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB5_PIG (Tubulin beta chain OS=Sus scrofa GN=TUBB PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.644e-52
Identity = 96/109 (88.07%), Postives = 106/109 (97.25%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGLKMA TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB5_PANTR (Tubulin beta chain OS=Pan troglodytes GN=TUBB PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.644e-52
Identity = 96/109 (88.07%), Postives = 106/109 (97.25%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGLKMA TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB5_MOUSE (Tubulin beta-5 chain OS=Mus musculus GN=Tubb5 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.644e-52
Identity = 96/109 (88.07%), Postives = 106/109 (97.25%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGLKMA TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF833671 vs. ExPASy Swiss-Prot
Match: TBB5_MACMU (Tubulin beta chain OS=Macaca mulatta GN=TUBB PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.644e-52
Identity = 96/109 (88.07%), Postives = 106/109 (97.25%), Query Frame = -1 
Query:  268 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 594
            LT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGLKMA TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  311 LTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
The following BLAST results are available for this feature:
BLAST of CF833671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
TBB_LEIME2.644e-5287.16Tubulin beta chain OS=Leishmania mexicana PE=3 SV=... [more]
TBB7_CHICK2.644e-5288.07Tubulin beta-7 chain OS=Gallus gallus PE=2 SV=1[more]
TBB5_XENTR2.644e-5288.07Tubulin beta chain OS=Xenopus tropicalis GN=tubb P... [more]
TBB5_XENLA2.644e-5288.07Tubulin beta chain OS=Xenopus laevis GN=tubb PE=2 ... [more]
TBB5_RAT2.644e-5288.07Tubulin beta-5 chain OS=Rattus norvegicus GN=Tubb5... [more]
TBB5_PONAB2.644e-5288.07Tubulin beta chain OS=Pongo abelii GN=TUBB PE=2 SV... [more]
TBB5_PIG2.644e-5288.07Tubulin beta chain OS=Sus scrofa GN=TUBB PE=2 SV=1[more]
TBB5_PANTR2.644e-5288.07Tubulin beta chain OS=Pan troglodytes GN=TUBB PE=3... [more]
TBB5_MOUSE2.644e-5288.07Tubulin beta-5 chain OS=Mus musculus GN=Tubb5 PE=1... [more]
TBB5_MACMU2.644e-5288.07Tubulin beta chain OS=Macaca mulatta GN=TUBB PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04A08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833671 ID=CF833671; Name=CF833671; organism=Citrus sinensis; type=EST; length=828bp
TTTTTTTTTTTTTTTAAGGTGATCAAACTAACAATTCTTTATTCAACCGT
TCGAAAAGAACAACAAACAATATCGTCTTAAAAGACAGAAATTGTAAACA
ACAACAAAAGAAGCCACAGTACAAGGGGGTTGGTCTCATCAAGCGTTCTT
TTTCTGTGGTTGCCCTTTGATTGCTACCCTTTCTTAGCCCTCGTAGTTCT
CGTCAAGGCCCTCCTCATACTCTTCCTCATCATCAGCTGTTGCATCCTGA
TATTGTTGGTACTCAGCCACCAAGTCATTCATGTTGCTCTCTGCCTCAGT
GAACTCCATCTCATCCATACCCTCCCCAGTATACCAATGCAAAAAGGCCT
TACGCCGGAACATGGCAGTAAACTGTTCACTCACCCTCCTGAACATCTCT
TGGATGGATGTTGAGTTACCAATAAAAGTAGATGCCATCTTCAGACCACG
TGGTGGAATATCGCACACGCTGGACTTCACATTGTTGGGGATCCACTCCA
CAAAGTAGGATGAATTCTTGTTCTGTACATTAATCATCTGCTCATCCACC
TCTTTGGTGCTCATCTTTCCTCTGAACATGGCTGAGGCTGTGAGGGAAAA
AGCAACTTAACTACTTTCGAACTTTGATTCCCGTAAGCAGAGATCTTTCT
GATTTGAAGAACATGGAAACCACCTGCGCAGGTAATAACTGGTCAGAGGG
TCTTCTGCTTCCTCCGTTTGGCAGTATTGCTGATGATGATGTCATGAACG
ACAATCTTGATTTTCTTAATGTCCCCCAATATGGAAGAAACCCCGACTAC
ATGGGTTAAGTGCAGCACTGCTTTTTTT
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