CF833672

Overview
NameCF833672
Unique NameCF833672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB6_ORYSJ (Tubulin beta-6 chain OS=Oryza sativa subsp. japonica GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.732e-45
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGL MASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT
Sbjct:  311 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB5_ORYSJ (Tubulin beta-5 chain OS=Oryza sativa subsp. japonica GN=TUBB5 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.792e-45
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCDIPP GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT
Sbjct:  311 LTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPNGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB2_SOLTU (Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.792e-45
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GLKMASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT
Sbjct:  314 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPTGLKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 402
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB1_SOLTU (Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.792e-45
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GLKMASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT
Sbjct:  314 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPTGLKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 402
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB1_ELEIN (Tubulin beta-1 chain OS=Eleusine indica GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.792e-45
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCDIPP GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT
Sbjct:  311 LTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPNGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB5_GOSHI (Tubulin beta-5 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.148e-44
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTA AMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP+GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT
Sbjct:  311 LTACAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB8_ARATH (Tubulin beta-8 chain OS=Arabidopsis thaliana GN=TUBB8 PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.500e-44
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKS+VCDIPP GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT
Sbjct:  311 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB2_MAIZE (Tubulin beta-2 chain OS=Zea mays GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.500e-44
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGL M+STF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT
Sbjct:  311 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMSSTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB2_LUPAL (Tubulin beta-2 chain OS=Lupinus albus GN=TUBB2 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.500e-44
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKS+VCDIPP GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT
Sbjct:  311 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB1_LUPAL (Tubulin beta-1 chain OS=Lupinus albus GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.500e-44
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKS+VCDIPP GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT
Sbjct:  311 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399
The following BLAST results are available for this feature:
BLAST of CF833672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
TBB6_ORYSJ6.732e-4597.75Tubulin beta-6 chain OS=Oryza sativa subsp. japoni... [more]
TBB5_ORYSJ8.792e-4597.75Tubulin beta-5 chain OS=Oryza sativa subsp. japoni... [more]
TBB2_SOLTU8.792e-4597.75Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2... [more]
TBB1_SOLTU8.792e-4597.75Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1... [more]
TBB1_ELEIN8.792e-4597.75Tubulin beta-1 chain OS=Eleusine indica GN=TUBB1 P... [more]
TBB5_GOSHI1.148e-4497.75Tubulin beta-5 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB8_ARATH1.500e-4497.75Tubulin beta-8 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB2_MAIZE1.500e-4496.63Tubulin beta-2 chain OS=Zea mays GN=TUBB2 PE=2 SV=... [more]
TBB2_LUPAL1.500e-4497.75Tubulin beta-2 chain OS=Lupinus albus GN=TUBB2 PE=... [more]
TBB1_LUPAL1.500e-4497.75Tubulin beta-1 chain OS=Lupinus albus GN=TUBB1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04A08_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833672 ID=CF833672; Name=CF833672; organism=Citrus sinensis; type=EST; length=694bp
TTTTTTGACCACACTATAACTTTTATTGATTTATTTCCTTTTTCAGGAAA
ATCCTTAGCTCAAAAGTAAACAAAAAGATTGCTTGTACGTCTCAAGAAAT
CTTATAAGTTGAACTAAACCATACTAAAACATTGTCATGATTGATAGGTA
ATAGTATACCTATCATTTATTTAATTAAACAAAACAGAAAAAAAAAAAAG
CAGTGCTGCACTTAACCCATGTAGTCGGGGTTTCTTCCATATTGGGGGAC
ATTAAGAAAATCAAGATTGTCGTTCATGACATCATCATCAGCAATACTGC
CAAACGGAGGAAGCAGAAGACCCTCTGACCAGTTATTACCTGCGCAGGTG
GTTTCCATGTTCTTCAAATCAGAAAGATCTCTGCTTACGGGAATCAAAGT
TCGAAAGTAGTTAAGTTGCTTTTTCCCTCACAGCCTCAGCCATGTTCAGA
GGAAAGATGAGCACCAAAGAGGTGGATGAGCAGATGATTAATGTACAGAA
CAAGAATTCATCCTACTTTGTGGAGTGGATCCCCAACAATGTGAAGTCCA
GCGTGTGCGATATTCCACCACGTGGTCTGAAGATGGCATCTACTTTTATT
GGTAACTCAACATCCATCCAAGAGATGTTCAGGAGGGTGAGTGAACAGTT
TACTGCCATGTTCCGGCGTAAGGCCTTTTTGCATTGGTATACTG
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