CF833672

Overview
NameCF833672
Unique NameCF833672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB1_PEA (Tubulin beta-1 chain OS=Pisum sativum GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.341e-44
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKS+VCDIPP GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT
Sbjct:  311 LTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB6_ARATH (Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.363e-44
Identity = 87/89 (97.75%), Postives = 87/89 (97.75%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDI PRGL MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT
Sbjct:  311 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIAPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB5_WHEAT (Tubulin beta-5 chain OS=Triticum aestivum GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.363e-44
Identity = 87/89 (97.75%), Postives = 87/89 (97.75%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDI PRGL MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT
Sbjct:  311 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIAPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB3_PEA (Tubulin beta-3 chain (Fragment) OS=Pisum sativum GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.363e-44
Identity = 87/89 (97.75%), Postives = 87/89 (97.75%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDI PRGL MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT
Sbjct:  302 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIAPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 390
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB7_MAIZE (Tubulin beta-7 chain OS=Zea mays GN=TUBB7 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.699e-44
Identity = 85/89 (95.51%), Postives = 88/89 (98.88%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCDIPP GLKM+STF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT
Sbjct:  311 LTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPIGLKMSSTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB_NAEGR (Tubulin beta chain OS=Naegleria gruberi PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.443e-44
Identity = 83/89 (93.26%), Postives = 89/89 (100.00%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNN+KSSVCDIPPRGLKMA+TFIGNST+IQEMF+RVSEQFTAMFRRKAFLHWYT
Sbjct:  311 LTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPRGLKMAATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYT 399
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB9_GOSHI (Tubulin beta-9 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.443e-44
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASA+FRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKS+VCDIPP GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT
Sbjct:  311 LTASAVFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPIGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB4_MAIZE (Tubulin beta-4 chain OS=Zea mays GN=TUBB4 PE=2 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 7.443e-44
Identity = 86/89 (96.63%), Postives = 87/89 (97.75%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GL MASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT
Sbjct:  313 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPVGLPMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 401
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB2_WHEAT (Tubulin beta-2 chain OS=Triticum aestivum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.443e-44
Identity = 85/89 (95.51%), Postives = 87/89 (97.75%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GL MASTF+GNSTSIQEMFRRVSEQFT+MFRRKAFLHWYT
Sbjct:  311 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPTGLSMASTFVGNSTSIQEMFRRVSEQFTSMFRRKAFLHWYT 399
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB1_ARATH (Tubulin beta-1 chain OS=Arabidopsis thaliana GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.443e-44
Identity = 84/89 (94.38%), Postives = 88/89 (98.88%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRGKMSTKEVDEQ++NVQNKNSSYFVEWIPNNVKSSVCDIPP G+KMASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT
Sbjct:  312 LTASAMFRGKMSTKEVDEQILNVQNKNSSYFVEWIPNNVKSSVCDIPPTGIKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 400
The following BLAST results are available for this feature:
BLAST of CF833672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
TBB1_PEA3.341e-4496.63Tubulin beta-1 chain OS=Pisum sativum GN=TUBB1 PE=... [more]
TBB6_ARATH4.363e-4497.75Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB5_WHEAT4.363e-4497.75Tubulin beta-5 chain OS=Triticum aestivum GN=TUBB5... [more]
TBB3_PEA4.363e-4497.75Tubulin beta-3 chain (Fragment) OS=Pisum sativum G... [more]
TBB7_MAIZE5.699e-4495.51Tubulin beta-7 chain OS=Zea mays GN=TUBB7 PE=2 SV=... [more]
TBB_NAEGR7.443e-4493.26Tubulin beta chain OS=Naegleria gruberi PE=2 SV=1[more]
TBB9_GOSHI7.443e-4496.63Tubulin beta-9 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB4_MAIZE7.443e-4496.63Tubulin beta-4 chain OS=Zea mays GN=TUBB4 PE=2 SV=... [more]
TBB2_WHEAT7.443e-4495.51Tubulin beta-2 chain OS=Triticum aestivum GN=TUBB2... [more]
TBB1_ARATH7.443e-4494.38Tubulin beta-1 chain OS=Arabidopsis thaliana GN=TU... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04A08_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833672 ID=CF833672; Name=CF833672; organism=Citrus sinensis; type=EST; length=694bp
TTTTTTGACCACACTATAACTTTTATTGATTTATTTCCTTTTTCAGGAAA
ATCCTTAGCTCAAAAGTAAACAAAAAGATTGCTTGTACGTCTCAAGAAAT
CTTATAAGTTGAACTAAACCATACTAAAACATTGTCATGATTGATAGGTA
ATAGTATACCTATCATTTATTTAATTAAACAAAACAGAAAAAAAAAAAAG
CAGTGCTGCACTTAACCCATGTAGTCGGGGTTTCTTCCATATTGGGGGAC
ATTAAGAAAATCAAGATTGTCGTTCATGACATCATCATCAGCAATACTGC
CAAACGGAGGAAGCAGAAGACCCTCTGACCAGTTATTACCTGCGCAGGTG
GTTTCCATGTTCTTCAAATCAGAAAGATCTCTGCTTACGGGAATCAAAGT
TCGAAAGTAGTTAAGTTGCTTTTTCCCTCACAGCCTCAGCCATGTTCAGA
GGAAAGATGAGCACCAAAGAGGTGGATGAGCAGATGATTAATGTACAGAA
CAAGAATTCATCCTACTTTGTGGAGTGGATCCCCAACAATGTGAAGTCCA
GCGTGTGCGATATTCCACCACGTGGTCTGAAGATGGCATCTACTTTTATT
GGTAACTCAACATCCATCCAAGAGATGTTCAGGAGGGTGAGTGAACAGTT
TACTGCCATGTTCCGGCGTAAGGCCTTTTTGCATTGGTATACTG
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